Wall clock time and date at job start Tue Mar 31 2020 01:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46766 * 2 1 4 4 N 1.46499 * 109.47537 * 239.99522 * 2 1 3 5 5 C 1.39675 * 119.99612 * 84.99758 * 4 2 1 6 6 C 1.38914 * 120.07282 * 180.02562 * 5 4 2 7 7 C 1.38100 * 119.92419 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.07489 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.92199 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47001 * 90.00208 * 9 8 7 11 11 H 1.08005 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46938 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47198 * 120.00527 * 14 12 10 17 17 H 1.48498 * 109.47360 * 240.00281 * 14 12 10 18 18 C 1.38283 * 120.14964 * 0.27921 * 8 7 6 19 19 C 1.38105 * 120.07446 * 359.44518 * 18 8 7 20 20 C 1.53000 * 109.47195 * 119.99486 * 2 1 3 21 21 Cl 1.80294 * 115.55033 * 159.41879 * 20 2 1 22 22 C 1.53004 * 117.49550 * 13.74917 * 20 2 1 23 23 C 1.52999 * 117.49843 * 305.09178 * 20 2 1 24 24 H 1.09003 * 109.47442 * 60.00405 * 1 2 3 25 25 H 1.09008 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47621 * 300.00139 * 1 2 3 27 27 H 0.96997 * 119.99975 * 265.00161 * 4 2 1 28 28 H 1.07999 * 120.03471 * 359.97438 * 6 5 4 29 29 H 1.08005 * 119.96293 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46646 * 209.99665 * 9 8 7 31 31 H 1.09000 * 109.47248 * 330.00383 * 9 8 7 32 32 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.96059 * 179.69879 * 18 8 7 34 34 H 1.07994 * 120.03590 * 180.27360 * 19 18 8 35 35 H 1.08998 * 117.50431 * 0.02562 * 22 20 2 36 36 H 1.09008 * 117.49296 * 145.02240 * 22 20 2 37 37 H 1.08999 * 117.49944 * 214.97861 * 23 20 2 38 38 H 1.08996 * 117.49959 * 359.97438 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1518 0.0061 -2.3992 6 6 2.6142 -0.6474 -3.5345 7 6 2.7454 0.0446 -4.7224 8 6 2.4165 1.3864 -4.7827 9 6 2.5604 2.1381 -6.0809 10 6 1.2737 2.0460 -6.8601 11 1 0.4357 1.4975 -6.4557 12 6 1.1663 2.6617 -8.0889 13 7 2.1870 3.3291 -8.5815 14 14 -0.4283 2.5469 -9.0551 15 1 -1.4152 1.7453 -8.2878 16 1 -0.9688 3.9113 -9.2821 17 1 -0.1688 1.8934 -10.3630 18 6 1.9608 2.0413 -3.6532 19 6 1.8218 1.3539 -2.4634 20 6 2.0400 -0.7211 1.2493 21 17 3.7349 -1.3291 1.1588 22 6 1.0325 -1.5531 2.0454 23 6 1.5399 -0.2224 2.6065 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.2491 -1.6318 -1.1524 28 1 2.8717 -1.6952 -3.4879 29 1 3.1053 -0.4627 -5.6053 30 1 2.7846 3.1842 -5.8721 31 1 3.3709 1.7024 -6.6652 32 1 2.1115 3.7620 -9.4462 33 1 1.7094 3.0905 -3.7026 34 1 1.4617 1.8649 -1.5828 35 1 0.0066 -1.5871 1.6790 36 1 1.3947 -2.4679 2.5148 37 1 2.2355 -0.2621 3.4448 38 1 0.8479 0.6197 2.6094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926894196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:32 Heat of formation + Delta-G solvation = 35.748193 kcal Electronic energy + Delta-G solvation = -18788.217826 eV Core-core repulsion = 15849.714234 eV Total energy + Delta-G solvation = -2938.503592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.50496 -38.27215 -35.82589 -35.08059 -32.97356 -31.05907 -30.11509 -29.07506 -26.30195 -24.60005 -23.09164 -22.57369 -22.13084 -20.10379 -19.49936 -17.25792 -16.69643 -16.20700 -15.50313 -15.07318 -14.76057 -14.19987 -13.98664 -13.44169 -12.94859 -12.86368 -12.74513 -12.57280 -12.35127 -12.17934 -11.93657 -11.76045 -11.52660 -11.42944 -11.19104 -11.16836 -10.64585 -10.50242 -10.45186 -10.12924 -9.99246 -9.70534 -9.38871 -8.99271 -8.35444 -8.18817 -6.73263 -5.95118 -3.99525 1.79421 2.16944 2.41172 3.03630 3.33217 3.40677 3.46014 3.60049 4.12678 4.22913 4.37785 4.46574 4.71263 4.92556 5.06902 5.12473 5.20082 5.36507 5.37491 5.46245 5.54357 5.59850 5.61478 5.70154 6.02169 6.09648 6.19137 6.37103 6.48292 6.75987 6.89683 7.34568 7.35135 7.47005 7.65046 7.88029 8.00479 8.02081 8.09279 8.44102 9.06699 9.63862 11.13221 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035006 B = 0.003336 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.664959 B = 8390.202123 C = 8754.989124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.194 3.806 3 H 0.088 0.912 4 N -0.746 5.746 5 C 0.186 3.814 6 C -0.191 4.191 7 C -0.079 4.079 8 C -0.084 4.084 9 C 0.053 3.947 10 C -0.507 4.507 11 H 0.057 0.943 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.081 4.081 19 C -0.196 4.196 20 C -0.063 4.063 21 Cl -0.129 7.129 22 C -0.168 4.168 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.395 0.605 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -8.695 22.565 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.086 3.914 3 H 0.106 0.894 4 N -0.379 5.379 5 C 0.087 3.913 6 C -0.213 4.213 7 C -0.098 4.098 8 C -0.086 4.086 9 C 0.016 3.984 10 C -0.545 4.545 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.099 4.099 19 C -0.219 4.219 20 C -0.090 4.090 21 Cl -0.101 7.101 22 C -0.205 4.205 23 C -0.196 4.196 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.230 0.770 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.567 -8.506 22.517 24.122 hybrid contribution -0.620 -0.457 -0.565 0.956 sum -2.187 -8.964 21.952 23.813 Atomic orbital electron populations 1.22475 0.95046 1.02757 1.02881 1.20275 0.93222 0.96151 0.81703 0.89375 1.44337 1.75280 1.11873 1.06408 1.17546 0.96854 0.91473 0.85451 1.20449 1.08911 0.99262 0.92694 1.20827 0.98534 0.94270 0.96181 1.20450 0.97185 0.94111 0.96810 1.18252 0.97355 0.94771 0.88052 1.21177 0.98454 1.32426 1.02435 0.92515 1.25025 0.96481 0.95403 0.97607 1.69975 1.30219 1.34639 1.18727 0.86522 0.83784 0.77739 0.79914 1.19723 1.21038 1.21031 1.20834 0.97886 0.99457 0.91770 1.20512 1.09872 0.92961 0.98522 1.24575 0.83843 1.05119 0.95424 1.98715 1.23770 1.88888 1.98743 1.23667 0.99353 0.95849 1.01624 1.23467 1.02958 0.98529 0.94630 0.90773 0.91755 0.91881 0.77000 0.87458 0.86632 0.95712 0.95709 0.93040 0.86707 0.87394 0.86623 0.87718 0.87441 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.09 37.16 0.30 -1.23 16 2 C 0.19 1.96 2.58 -67.93 -0.18 1.79 16 3 H 0.09 0.98 6.48 -51.93 -0.34 0.64 16 4 N -0.75 -9.34 4.77 -52.17 -0.25 -9.58 16 5 C 0.19 2.98 6.64 -83.79 -0.56 2.43 16 6 C -0.19 -3.30 9.90 -39.38 -0.39 -3.69 16 7 C -0.08 -1.60 9.69 -39.61 -0.38 -1.99 16 8 C -0.08 -1.88 5.07 -104.58 -0.53 -2.41 16 9 C 0.05 1.39 5.10 -29.03 -0.15 1.24 16 10 C -0.51 -14.47 9.09 -34.44 -0.31 -14.78 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.08 -1.61 9.69 -39.61 -0.38 -2.00 16 19 C -0.20 -3.33 8.85 -39.38 -0.35 -3.68 16 20 C -0.06 -0.55 2.82 -90.62 -0.26 -0.80 16 21 Cl -0.13 -1.36 28.25 -51.86 -1.46 -2.82 16 22 C -0.17 -1.09 9.50 -26.69 -0.25 -1.34 16 23 C -0.16 -1.01 9.72 -26.69 -0.26 -1.27 16 24 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 25 H 0.06 0.54 6.74 -51.92 -0.35 0.19 16 26 H 0.06 0.42 6.96 -51.93 -0.36 0.06 16 27 H 0.40 4.66 8.20 -40.82 -0.33 4.33 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 30 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.11 1.56 6.12 -52.49 -0.32 1.24 16 35 H 0.12 0.67 5.89 -51.93 -0.31 0.36 16 36 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.58 7.28 -51.93 -0.38 0.20 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -30.57 327.40 -10.14 -40.71 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.28 Total: 2.36 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.79 Total: -26.22 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.49 Total: -35.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.46 Total: -2.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.57 -10.14 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926894196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.454 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds