Wall clock time and date at job start Tue Mar 31 2020 01:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46766 * 2 1 4 4 N 1.46499 * 109.47537 * 239.99522 * 2 1 3 5 5 C 1.39675 * 119.99612 * 84.99758 * 4 2 1 6 6 C 1.38914 * 120.07282 * 180.02562 * 5 4 2 7 7 C 1.38100 * 119.92419 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.07489 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.92199 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47001 * 90.00208 * 9 8 7 11 11 H 1.08005 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46938 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47198 * 120.00527 * 14 12 10 17 17 H 1.48498 * 109.47360 * 240.00281 * 14 12 10 18 18 C 1.38283 * 120.14964 * 0.27921 * 8 7 6 19 19 C 1.38105 * 120.07446 * 359.44518 * 18 8 7 20 20 C 1.53000 * 109.47195 * 119.99486 * 2 1 3 21 21 Cl 1.80294 * 115.55033 * 159.41879 * 20 2 1 22 22 C 1.53004 * 117.49550 * 13.74917 * 20 2 1 23 23 C 1.52999 * 117.49843 * 305.09178 * 20 2 1 24 24 H 1.09003 * 109.47442 * 60.00405 * 1 2 3 25 25 H 1.09008 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47621 * 300.00139 * 1 2 3 27 27 H 0.96997 * 119.99975 * 265.00161 * 4 2 1 28 28 H 1.07999 * 120.03471 * 359.97438 * 6 5 4 29 29 H 1.08005 * 119.96293 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46646 * 209.99665 * 9 8 7 31 31 H 1.09000 * 109.47248 * 330.00383 * 9 8 7 32 32 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.96059 * 179.69879 * 18 8 7 34 34 H 1.07994 * 120.03590 * 180.27360 * 19 18 8 35 35 H 1.08998 * 117.50431 * 0.02562 * 22 20 2 36 36 H 1.09008 * 117.49296 * 145.02240 * 22 20 2 37 37 H 1.08999 * 117.49944 * 214.97861 * 23 20 2 38 38 H 1.08996 * 117.49959 * 359.97438 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1518 0.0061 -2.3992 6 6 2.6142 -0.6474 -3.5345 7 6 2.7454 0.0446 -4.7224 8 6 2.4165 1.3864 -4.7827 9 6 2.5604 2.1381 -6.0809 10 6 1.2737 2.0460 -6.8601 11 1 0.4357 1.4975 -6.4557 12 6 1.1663 2.6617 -8.0889 13 7 2.1870 3.3291 -8.5815 14 14 -0.4283 2.5469 -9.0551 15 1 -1.4152 1.7453 -8.2878 16 1 -0.9688 3.9113 -9.2821 17 1 -0.1688 1.8934 -10.3630 18 6 1.9608 2.0413 -3.6532 19 6 1.8218 1.3539 -2.4634 20 6 2.0400 -0.7211 1.2493 21 17 3.7349 -1.3291 1.1588 22 6 1.0325 -1.5531 2.0454 23 6 1.5399 -0.2224 2.6065 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.2491 -1.6318 -1.1524 28 1 2.8717 -1.6952 -3.4879 29 1 3.1053 -0.4627 -5.6053 30 1 2.7846 3.1842 -5.8721 31 1 3.3709 1.7024 -6.6652 32 1 2.1115 3.7620 -9.4462 33 1 1.7094 3.0905 -3.7026 34 1 1.4617 1.8649 -1.5828 35 1 0.0066 -1.5871 1.6790 36 1 1.3947 -2.4679 2.5148 37 1 2.2355 -0.2621 3.4448 38 1 0.8479 0.6197 2.6094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926894196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:32 Heat of formation + Delta-G solvation = 19.893499 kcal Electronic energy + Delta-G solvation = -18788.905337 eV Core-core repulsion = 15849.714234 eV Total energy + Delta-G solvation = -2939.191103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.58859 -39.31894 -36.72668 -36.15578 -34.91862 -32.47133 -31.62738 -30.35816 -27.93225 -25.67382 -24.49202 -23.52794 -23.40785 -21.58691 -20.37140 -18.49267 -18.28413 -17.59986 -16.74511 -16.34655 -15.87328 -15.66780 -15.27653 -14.68800 -14.53914 -14.15536 -14.02885 -13.74572 -13.41946 -13.28815 -13.18358 -12.87026 -12.81278 -12.55753 -12.47006 -12.34476 -12.24495 -12.03558 -11.61197 -11.57895 -11.35112 -11.14741 -10.74732 -10.57951 -10.48792 -9.66650 -8.29645 -7.94704 -6.29335 0.68815 0.90716 1.13075 1.40372 1.40554 1.54615 2.33290 2.42312 2.76757 3.13530 3.16941 3.44168 3.61371 3.83507 4.09585 4.20888 4.29826 4.38306 4.51279 4.55440 4.67453 4.72164 4.78959 4.85914 4.90589 4.92440 5.10042 5.14944 5.20751 5.35332 5.38899 5.41146 5.56891 5.71682 5.82484 6.04579 6.24794 6.26089 6.58942 6.84351 6.92889 7.39046 8.93131 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035006 B = 0.003336 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.664959 B = 8390.202123 C = 8754.989124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.189 3.811 3 H 0.081 0.919 4 N -0.735 5.735 5 C 0.205 3.795 6 C -0.192 4.192 7 C -0.089 4.089 8 C -0.123 4.123 9 C 0.063 3.937 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.089 4.089 19 C -0.192 4.192 20 C -0.081 4.081 21 Cl -0.151 7.151 22 C -0.155 4.155 23 C -0.145 4.145 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.402 0.598 28 H 0.134 0.866 29 H 0.109 0.891 30 H -0.003 1.003 31 H -0.004 1.004 32 H 0.264 0.736 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -9.936 25.031 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.083 3.917 3 H 0.099 0.901 4 N -0.366 5.366 5 C 0.103 3.897 6 C -0.214 4.214 7 C -0.108 4.108 8 C -0.125 4.125 9 C 0.026 3.974 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.791 3.209 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.108 4.108 19 C -0.214 4.214 20 C -0.107 4.107 21 Cl -0.124 7.124 22 C -0.192 4.192 23 C -0.183 4.183 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.237 0.763 28 H 0.152 0.848 29 H 0.127 0.873 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.537 -9.770 25.033 27.104 hybrid contribution 0.013 -0.118 -1.164 1.170 sum -3.523 -9.888 23.869 26.075 Atomic orbital electron populations 1.22434 0.93544 1.03430 1.03272 1.20448 0.94252 0.95740 0.81217 0.90114 1.44449 1.74085 1.12140 1.05952 1.17604 0.94518 0.91239 0.86377 1.20628 1.08479 1.00378 0.91899 1.20808 0.99009 0.93597 0.97387 1.20128 1.01437 0.95164 0.95783 1.17983 0.95758 0.93533 0.90103 1.21482 0.99083 1.32463 1.03157 0.92875 1.25968 1.00276 0.94796 0.98675 1.70104 1.32510 1.35417 1.19321 0.85381 0.79166 0.78127 0.78274 1.18919 1.20106 1.20206 1.20833 0.98163 0.99478 0.92295 1.20672 1.09218 0.93365 0.98161 1.24574 0.83087 1.07241 0.95803 1.98715 1.25743 1.89177 1.98796 1.23766 0.99119 0.96096 1.00212 1.23611 1.02636 0.99051 0.92986 0.92699 0.90949 0.89217 0.76251 0.84836 0.87330 0.98447 0.98572 0.92686 0.87204 0.84591 0.85401 0.87311 0.87004 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.09 71.98 0.58 -1.78 16 2 C 0.19 3.25 2.58 44.99 0.12 3.37 16 3 H 0.08 1.54 6.48 -2.39 -0.02 1.53 16 4 N -0.74 -16.41 4.77 -318.96 -1.52 -17.93 16 5 C 0.20 6.20 6.64 38.21 0.25 6.45 16 6 C -0.19 -6.41 9.90 22.40 0.22 -6.19 16 7 C -0.09 -3.69 9.69 22.25 0.22 -3.48 16 8 C -0.12 -5.76 5.07 -19.84 -0.10 -5.86 16 9 C 0.06 3.56 5.10 29.10 0.15 3.71 16 10 C -0.52 -31.09 9.09 25.60 0.23 -30.86 16 11 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 12 C 0.00 0.02 5.46 84.65 0.46 0.48 16 13 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 14 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 C -0.09 -3.63 9.69 22.25 0.22 -3.41 16 19 C -0.19 -6.26 8.85 22.40 0.20 -6.06 16 20 C -0.08 -1.14 2.82 -10.79 -0.03 -1.17 16 21 Cl -0.15 -2.90 28.25 -2.72 -0.08 -2.98 16 22 C -0.16 -1.42 9.50 30.62 0.29 -1.13 16 23 C -0.15 -1.30 9.72 30.62 0.30 -1.00 16 24 H 0.05 1.02 7.71 -2.39 -0.02 1.00 16 25 H 0.07 0.92 6.74 -2.38 -0.02 0.90 16 26 H 0.09 0.80 6.96 -2.39 -0.02 0.78 16 27 H 0.40 8.30 8.20 -92.71 -0.76 7.54 16 28 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 31 H 0.00 -0.24 8.08 -2.39 -0.02 -0.26 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.14 3.62 6.12 -2.91 -0.02 3.60 16 35 H 0.13 0.89 5.89 -2.39 -0.01 0.87 16 36 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.13 0.75 7.28 -2.39 -0.02 0.73 16 Total: -1.00 -68.54 327.40 4.12 -64.41 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.30 Total: 13.59 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 3.10 Total: -46.93 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.24 Total: -75.54 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.08 Total: -2.98 kcal Total: -68.54 4.12 -64.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926894196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.308 kcal (2) G-P(sol) polarization free energy of solvation -68.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds