Wall clock time and date at job start Tue Mar 31 2020 00:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 112.85248 * 2 1 4 4 C 1.53780 * 113.61337 * 131.20153 * 2 1 3 5 5 C 1.53790 * 87.08070 * 139.98006 * 4 2 1 6 6 C 1.53784 * 113.61248 * 228.80971 * 2 1 3 7 7 H 1.09005 * 113.61459 * 334.56421 * 6 2 1 8 8 C 1.50698 * 113.61758 * 105.46842 * 6 2 1 9 9 O 1.21280 * 119.99853 * 336.05686 * 8 6 2 10 10 N 1.34773 * 120.00231 * 156.05456 * 8 6 2 11 11 C 1.46501 * 120.00183 * 180.02562 * 10 8 6 12 12 H 1.08996 * 109.46832 * 324.99338 * 11 10 8 13 13 C 1.50705 * 109.46980 * 205.00311 * 11 10 8 14 14 H 1.08004 * 119.99918 * 359.97438 * 13 11 10 15 15 C 1.37877 * 119.99793 * 179.97438 * 13 11 10 16 16 N 1.31511 * 120.00003 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99810 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46978 * 119.99833 * 17 15 13 20 20 H 1.48499 * 109.46968 * 239.99877 * 17 15 13 21 21 C 1.52994 * 109.47349 * 84.99780 * 11 10 8 22 22 F 1.39901 * 109.47143 * 60.00171 * 21 11 10 23 23 F 1.39903 * 109.46965 * 180.02562 * 21 11 10 24 24 F 1.39901 * 109.47259 * 299.99889 * 21 11 10 25 25 H 1.08998 * 109.47249 * 69.66448 * 1 2 3 26 26 H 1.09004 * 109.47170 * 189.66069 * 1 2 3 27 27 H 1.09001 * 109.47226 * 309.66250 * 1 2 3 28 28 H 1.09007 * 109.46509 * 71.26309 * 3 2 1 29 29 H 1.08999 * 109.47621 * 191.25940 * 3 2 1 30 30 H 1.09002 * 109.47453 * 311.26869 * 3 2 1 31 31 H 1.08998 * 113.61628 * 254.52330 * 4 2 1 32 32 H 1.08994 * 113.61881 * 25.35116 * 4 2 1 33 33 H 1.09002 * 113.61313 * 89.11300 * 5 4 2 34 34 H 1.09002 * 113.61472 * 219.93167 * 5 4 2 35 35 H 0.97004 * 120.00027 * 359.97438 * 10 8 6 36 36 H 0.97003 * 119.99761 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 3.1923 -1.3136 0.0011 6 6 2.1460 -0.9280 -1.0604 7 1 1.4944 -1.7522 -1.3508 8 6 2.7252 -0.1937 -2.2420 9 8 2.3236 0.9156 -2.5229 10 7 3.6896 -0.7698 -2.9867 11 6 4.2531 -0.0557 -4.1351 12 1 3.4729 0.5364 -4.6131 13 6 4.8053 -1.0505 -5.1234 14 1 4.7430 -2.1087 -4.9166 15 6 5.3898 -0.6096 -6.2917 16 7 5.4651 0.6789 -6.5438 17 14 6.0749 -1.8426 -7.5165 18 1 5.8679 -3.2197 -7.0008 19 1 5.3743 -1.6899 -8.8169 20 1 7.5274 -1.5982 -7.7050 21 6 5.3761 0.8684 -3.6601 22 9 6.3775 0.1082 -3.0465 23 9 5.9138 1.5507 -4.7568 24 9 4.8634 1.7919 -2.7427 25 1 -0.3634 0.3571 -0.9636 26 1 -0.3634 -1.0131 0.1725 27 1 -0.3634 0.6559 0.7911 28 1 1.9610 1.8728 0.9733 29 1 3.1940 1.3534 -0.2006 30 1 1.6407 2.0080 -0.7724 31 1 2.5651 -0.3972 1.9149 32 1 1.4940 -1.7515 1.3515 33 1 4.0711 -0.6687 0.0005 34 1 3.4454 -2.3739 0.0030 35 1 4.0112 -1.6569 -2.7618 36 1 5.8761 0.9891 -7.3659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:27 Heat of formation + Delta-G solvation = -166.297077 kcal Electronic energy + Delta-G solvation = -23752.981070 eV Core-core repulsion = 19823.150232 eV Total energy + Delta-G solvation = -3929.830837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.33764 -45.99366 -45.60158 -40.36120 -37.56093 -34.58517 -32.58373 -30.59219 -28.66040 -27.17882 -26.16407 -24.53130 -22.45881 -21.65284 -19.93989 -18.38618 -17.30569 -16.80364 -16.61354 -16.47865 -15.66196 -15.09782 -14.91264 -14.54117 -13.93513 -13.65460 -13.41252 -13.05718 -12.91338 -12.69977 -12.41776 -12.37489 -12.25710 -11.97706 -11.95363 -11.82100 -11.69198 -11.46736 -11.19477 -11.09069 -10.86972 -10.73071 -10.62473 -10.39890 -10.21790 -9.94492 -9.62673 -8.84882 -8.72302 -8.19889 -6.23880 -4.47446 3.17063 3.24424 3.28024 3.31016 3.88940 4.21554 4.53965 4.56893 4.64982 4.84132 4.87199 4.93489 5.38677 5.50284 5.59118 5.68454 5.76518 5.83618 5.86759 5.88889 5.93358 5.96852 6.12321 6.17106 6.22733 6.28877 6.39576 6.57689 6.78605 6.97749 7.25038 7.49199 7.63713 8.40072 8.51347 8.98072 9.20964 10.67912 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027797 B = 0.005922 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.045653 B = 4726.881783 C = 5038.924010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.059 4.059 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.129 4.129 7 H 0.112 0.888 8 C 0.515 3.485 9 O -0.533 6.533 10 N -0.712 5.712 11 C 0.244 3.756 12 H 0.084 0.916 13 C -0.551 4.551 14 H 0.077 0.923 15 C 0.064 3.936 16 N -0.840 5.840 17 Si 0.914 3.086 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.417 3.583 22 F -0.210 7.210 23 F -0.138 7.138 24 F -0.218 7.218 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -4.092 10.966 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 C -0.179 4.179 4 C -0.172 4.172 5 C -0.167 4.167 6 C -0.151 4.151 7 H 0.130 0.870 8 C 0.300 3.700 9 O -0.409 6.409 10 N -0.361 5.361 11 C 0.138 3.862 12 H 0.101 0.899 13 C -0.588 4.588 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.474 5.474 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.361 3.639 22 F -0.192 7.192 23 F -0.119 7.119 24 F -0.200 7.200 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.152 -3.100 10.605 12.191 hybrid contribution 0.884 -0.868 -0.533 1.349 sum -4.268 -3.967 10.072 11.636 Atomic orbital electron populations 1.21718 0.94201 1.01113 1.02099 1.21637 0.95212 0.95150 0.93981 1.21615 1.01116 0.94235 1.00938 1.23030 0.98119 0.99255 0.96764 1.22872 0.97042 1.01753 0.95035 1.22941 0.99327 0.99783 0.93010 0.87031 1.20402 0.79775 0.86513 0.83278 1.90662 1.60695 1.19512 1.70041 1.46114 1.39009 1.20516 1.30479 1.19689 0.90538 0.92326 0.83613 0.89869 1.20932 1.42239 0.92887 1.02758 0.90474 1.25092 0.95180 0.95865 0.98317 1.70412 1.40373 1.12627 1.23940 0.86170 0.78667 0.80732 0.80329 1.19411 1.20563 1.20568 1.23148 0.85327 0.80681 0.74752 1.92984 1.65155 1.76711 1.84349 1.93402 1.87199 1.80982 1.50307 1.93063 1.87246 1.69892 1.69768 0.92078 0.92937 0.92707 0.93669 0.92698 0.90424 0.91292 0.90105 0.89625 0.90830 0.76926 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.18 37.16 0.34 -1.22 16 2 C -0.06 -0.78 1.20 -153.70 -0.18 -0.97 16 3 C -0.12 -1.86 7.50 37.16 0.28 -1.58 16 4 C -0.13 -1.46 7.23 -25.91 -0.19 -1.65 16 5 C -0.13 -1.59 7.27 -25.82 -0.19 -1.78 16 6 C -0.13 -1.85 3.66 -90.87 -0.33 -2.18 16 7 H 0.11 1.40 8.10 -51.93 -0.42 0.98 16 8 C 0.51 9.92 6.06 -10.99 -0.07 9.85 16 9 O -0.53 -12.07 12.59 5.56 0.07 -12.00 16 10 N -0.71 -14.45 4.95 -54.94 -0.27 -14.73 16 11 C 0.24 6.06 2.21 -69.08 -0.15 5.91 16 12 H 0.08 2.32 7.58 -51.93 -0.39 1.93 16 13 C -0.55 -14.08 8.46 -34.44 -0.29 -14.37 16 14 H 0.08 1.87 7.74 -52.48 -0.41 1.46 16 15 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.15 9.51 55.43 0.53 -22.62 16 17 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.42 10.71 2.81 37.15 0.10 10.81 16 22 F -0.21 -5.19 16.94 2.25 0.04 -5.15 16 23 F -0.14 -3.84 12.92 2.25 0.03 -3.81 16 24 F -0.22 -5.51 15.68 2.25 0.04 -5.47 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.52 7.98 -51.93 -0.41 0.11 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.94 6.83 -51.93 -0.35 0.58 16 30 H 0.08 1.35 6.87 -51.93 -0.36 1.00 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.08 0.75 7.99 -51.93 -0.41 0.33 16 33 H 0.09 1.19 7.61 -51.93 -0.40 0.80 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 7.05 8.54 -40.82 -0.35 6.71 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -29.20 302.42 -5.56 -34.76 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.75 Total: 4.98 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.77 Total: 4.40 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.25 Total: -37.35 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 0.10 Total: -14.44 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.20 -5.56 -34.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.542 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds