Wall clock time and date at job start Tue Mar 31 2020 00:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 112.85248 * 2 1 4 4 C 1.53780 * 113.61337 * 131.20153 * 2 1 3 5 5 C 1.53790 * 87.08070 * 139.98006 * 4 2 1 6 6 C 1.53784 * 113.61248 * 228.80971 * 2 1 3 7 7 H 1.09005 * 113.61459 * 334.56421 * 6 2 1 8 8 C 1.50698 * 113.61758 * 105.46842 * 6 2 1 9 9 O 1.21280 * 119.99853 * 336.05686 * 8 6 2 10 10 N 1.34773 * 120.00231 * 156.05456 * 8 6 2 11 11 C 1.46501 * 120.00183 * 180.02562 * 10 8 6 12 12 H 1.08996 * 109.46832 * 324.99338 * 11 10 8 13 13 C 1.50705 * 109.46980 * 205.00311 * 11 10 8 14 14 H 1.08004 * 119.99918 * 359.97438 * 13 11 10 15 15 C 1.37877 * 119.99793 * 179.97438 * 13 11 10 16 16 N 1.31511 * 120.00003 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99810 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46978 * 119.99833 * 17 15 13 20 20 H 1.48499 * 109.46968 * 239.99877 * 17 15 13 21 21 C 1.52994 * 109.47349 * 84.99780 * 11 10 8 22 22 F 1.39901 * 109.47143 * 60.00171 * 21 11 10 23 23 F 1.39903 * 109.46965 * 180.02562 * 21 11 10 24 24 F 1.39901 * 109.47259 * 299.99889 * 21 11 10 25 25 H 1.08998 * 109.47249 * 69.66448 * 1 2 3 26 26 H 1.09004 * 109.47170 * 189.66069 * 1 2 3 27 27 H 1.09001 * 109.47226 * 309.66250 * 1 2 3 28 28 H 1.09007 * 109.46509 * 71.26309 * 3 2 1 29 29 H 1.08999 * 109.47621 * 191.25940 * 3 2 1 30 30 H 1.09002 * 109.47453 * 311.26869 * 3 2 1 31 31 H 1.08998 * 113.61628 * 254.52330 * 4 2 1 32 32 H 1.08994 * 113.61881 * 25.35116 * 4 2 1 33 33 H 1.09002 * 113.61313 * 89.11300 * 5 4 2 34 34 H 1.09002 * 113.61472 * 219.93167 * 5 4 2 35 35 H 0.97004 * 120.00027 * 359.97438 * 10 8 6 36 36 H 0.97003 * 119.99761 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 3.1923 -1.3136 0.0011 6 6 2.1460 -0.9280 -1.0604 7 1 1.4944 -1.7522 -1.3508 8 6 2.7252 -0.1937 -2.2420 9 8 2.3236 0.9156 -2.5229 10 7 3.6896 -0.7698 -2.9867 11 6 4.2531 -0.0557 -4.1351 12 1 3.4729 0.5364 -4.6131 13 6 4.8053 -1.0505 -5.1234 14 1 4.7430 -2.1087 -4.9166 15 6 5.3898 -0.6096 -6.2917 16 7 5.4651 0.6789 -6.5438 17 14 6.0749 -1.8426 -7.5165 18 1 5.8679 -3.2197 -7.0008 19 1 5.3743 -1.6899 -8.8169 20 1 7.5274 -1.5982 -7.7050 21 6 5.3761 0.8684 -3.6601 22 9 6.3775 0.1082 -3.0465 23 9 5.9138 1.5507 -4.7568 24 9 4.8634 1.7919 -2.7427 25 1 -0.3634 0.3571 -0.9636 26 1 -0.3634 -1.0131 0.1725 27 1 -0.3634 0.6559 0.7911 28 1 1.9610 1.8728 0.9733 29 1 3.1940 1.3534 -0.2006 30 1 1.6407 2.0080 -0.7724 31 1 2.5651 -0.3972 1.9149 32 1 1.4940 -1.7515 1.3515 33 1 4.0711 -0.6687 0.0005 34 1 3.4454 -2.3739 0.0030 35 1 4.0112 -1.6569 -2.7618 36 1 5.8761 0.9891 -7.3659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:26 Heat of formation + Delta-G solvation = -184.095332 kcal Electronic energy + Delta-G solvation = -23753.752860 eV Core-core repulsion = 19823.150232 eV Total energy + Delta-G solvation = -3930.602628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.43244 -48.06754 -47.74490 -41.61786 -38.99410 -36.41395 -34.46564 -31.73850 -30.37058 -28.28209 -27.46489 -26.54491 -23.56009 -23.39008 -21.58829 -19.78071 -18.99425 -18.80905 -18.62907 -18.19479 -17.40610 -16.83671 -16.22876 -16.07560 -15.24413 -15.09024 -14.97424 -14.85799 -14.57800 -14.48005 -14.32291 -14.07762 -14.03105 -13.94948 -13.70842 -13.13696 -13.08002 -12.79518 -12.76459 -12.63757 -12.39932 -12.20210 -12.13704 -11.70731 -11.54663 -11.24722 -10.94531 -10.71068 -10.35358 -9.98737 -8.22834 -6.53648 1.44564 1.45777 1.58967 1.76686 2.25617 2.41693 2.55090 2.92824 3.46383 3.62632 3.70595 3.79973 3.86299 3.89897 4.11997 4.31232 4.36480 4.60880 4.71094 4.82576 4.87096 4.93344 4.96749 5.03394 5.07569 5.17516 5.28083 5.33823 5.46441 5.54212 5.60046 5.62449 5.66457 6.52086 6.80866 7.16507 7.45933 8.70280 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027797 B = 0.005922 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.045653 B = 4726.881783 C = 5038.924010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.129 4.129 7 H 0.139 0.861 8 C 0.508 3.492 9 O -0.573 6.573 10 N -0.707 5.707 11 C 0.251 3.749 12 H 0.043 0.957 13 C -0.561 4.561 14 H 0.092 0.908 15 C 0.013 3.987 16 N -0.877 5.877 17 Si 0.984 3.016 18 H -0.254 1.254 19 H -0.277 1.277 20 H -0.281 1.281 21 C 0.414 3.586 22 F -0.203 7.203 23 F -0.153 7.153 24 F -0.219 7.219 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.411 0.589 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 -6.788 12.449 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 C -0.175 4.175 4 C -0.151 4.151 5 C -0.164 4.164 6 C -0.150 4.150 7 H 0.157 0.843 8 C 0.296 3.704 9 O -0.452 6.452 10 N -0.358 5.358 11 C 0.144 3.856 12 H 0.061 0.939 13 C -0.597 4.597 14 H 0.110 0.890 15 C -0.192 4.192 16 N -0.511 5.511 17 Si 0.807 3.193 18 H -0.178 1.178 19 H -0.203 1.203 20 H -0.207 1.207 21 C 0.358 3.642 22 F -0.185 7.185 23 F -0.134 7.134 24 F -0.201 7.201 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.247 0.753 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.619 -5.827 12.123 14.577 hybrid contribution 1.012 0.058 -0.964 1.399 sum -4.608 -5.768 11.159 13.380 Atomic orbital electron populations 1.21696 0.92806 1.02888 1.01337 1.21736 0.96342 0.93953 0.94857 1.21521 0.99050 0.95929 1.00966 1.22988 0.97222 0.99108 0.95771 1.22880 0.96150 1.02915 0.94497 1.23152 1.00583 1.00366 0.90909 0.84344 1.21449 0.78796 0.86280 0.83882 1.90651 1.61758 1.21598 1.71193 1.46026 1.39347 1.20904 1.29527 1.19261 0.89159 0.92037 0.85147 0.93922 1.21280 1.41930 0.93564 1.02949 0.89018 1.26033 0.95390 0.97569 1.00220 1.70546 1.41309 1.14669 1.24567 0.85106 0.77528 0.78924 0.77735 1.17753 1.20297 1.20690 1.23318 0.85723 0.80753 0.74423 1.92980 1.64920 1.76459 1.84171 1.93371 1.87473 1.81372 1.51164 1.93057 1.87270 1.70057 1.69733 0.94331 0.90376 0.91535 0.91430 0.95428 0.93609 0.90463 0.87077 0.91889 0.88137 0.75278 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.18 71.98 0.66 -2.06 16 2 C -0.07 -1.67 1.20 -51.66 -0.06 -1.73 16 3 C -0.12 -3.60 7.50 71.98 0.54 -3.06 16 4 C -0.11 -2.01 7.23 31.12 0.22 -1.79 16 5 C -0.13 -2.75 7.27 31.18 0.23 -2.53 16 6 C -0.13 -3.44 3.66 -10.95 -0.04 -3.48 16 7 H 0.14 2.98 8.10 -2.38 -0.02 2.96 16 8 C 0.51 19.73 6.06 87.66 0.53 20.26 16 9 O -0.57 -27.12 12.59 -3.03 -0.04 -27.16 16 10 N -0.71 -28.81 4.95 -446.11 -2.21 -31.02 16 11 C 0.25 12.79 2.21 44.24 0.10 12.89 16 12 H 0.04 2.52 7.58 -2.39 -0.02 2.50 16 13 C -0.56 -28.61 8.46 25.60 0.22 -28.39 16 14 H 0.09 4.31 7.74 -2.91 -0.02 4.28 16 15 C 0.01 0.67 5.20 84.66 0.44 1.11 16 16 N -0.88 -49.35 9.51 21.45 0.20 -49.15 16 17 Si 0.98 40.79 29.54 68.60 2.03 42.82 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 C 0.41 21.84 2.81 71.98 0.20 22.04 16 22 F -0.20 -10.11 16.94 44.97 0.76 -9.35 16 23 F -0.15 -8.79 12.92 44.97 0.58 -8.21 16 24 F -0.22 -11.52 15.68 44.97 0.71 -10.82 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.23 7.98 -2.38 -0.02 1.21 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.03 0.96 6.83 -2.39 -0.02 0.94 16 30 H 0.04 1.67 6.87 -2.39 -0.02 1.65 16 31 H 0.08 1.29 8.10 -2.39 -0.02 1.28 16 32 H 0.11 1.39 7.99 -2.39 -0.02 1.37 16 33 H 0.06 1.67 7.61 -2.39 -0.02 1.65 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 14.15 8.54 -92.71 -0.79 13.36 16 36 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -65.47 302.42 5.38 -60.09 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.31 Total: 19.51 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 3.04 Total: 13.27 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.01 Total: -80.16 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.04 Total: -27.16 kcal Atomic # 9 Polarization: -30.42 SS G_CDS: 2.05 Total: -28.37 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -65.47 5.38 -60.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.005 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds