Wall clock time and date at job start Tue Mar 31 2020 00:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 112.84894 * 2 1 4 4 C 1.53780 * 113.61572 * 131.20124 * 2 1 3 5 5 C 1.53780 * 87.08354 * 139.97949 * 4 2 1 6 6 C 1.53780 * 113.60991 * 228.80643 * 2 1 3 7 7 H 1.09002 * 113.61297 * 105.47237 * 6 2 1 8 8 C 1.50701 * 113.61807 * 334.56724 * 6 2 1 9 9 O 1.21278 * 119.99622 * 270.41571 * 8 6 2 10 10 N 1.34774 * 119.99916 * 90.41168 * 8 6 2 11 11 C 1.46502 * 119.99848 * 180.02562 * 10 8 6 12 12 H 1.09009 * 109.46951 * 325.00244 * 11 10 8 13 13 C 1.50693 * 109.47165 * 205.00197 * 11 10 8 14 14 H 1.08007 * 120.00358 * 0.02562 * 13 11 10 15 15 C 1.37881 * 120.00185 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99650 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00064 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46851 * 119.99950 * 17 15 13 20 20 H 1.48498 * 109.46898 * 239.99667 * 17 15 13 21 21 C 1.52995 * 109.47076 * 85.00187 * 11 10 8 22 22 F 1.39895 * 109.47256 * 60.00206 * 21 11 10 23 23 F 1.39899 * 109.47267 * 180.02562 * 21 11 10 24 24 F 1.39902 * 109.47224 * 300.00158 * 21 11 10 25 25 H 1.09006 * 109.47578 * 66.14817 * 1 2 3 26 26 H 1.09007 * 109.47005 * 306.14983 * 1 2 3 27 27 H 1.09000 * 109.47363 * 186.15213 * 1 2 3 28 28 H 1.09000 * 109.47105 * 50.33359 * 3 2 1 29 29 H 1.08996 * 109.46730 * 170.33674 * 3 2 1 30 30 H 1.09002 * 109.47094 * 290.33669 * 3 2 1 31 31 H 1.09002 * 113.60914 * 254.52956 * 4 2 1 32 32 H 1.09005 * 113.61490 * 25.42587 * 4 2 1 33 33 H 1.08998 * 113.61193 * 89.11097 * 5 4 2 34 34 H 1.08998 * 113.61124 * 220.02376 * 5 4 2 35 35 H 0.96999 * 120.00158 * 0.02562 * 10 8 6 36 36 H 0.97001 * 119.99621 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 3.1923 -1.3136 0.0011 6 6 2.1459 -0.9280 -1.0603 7 1 2.5649 -0.3969 -1.9150 8 6 1.2451 -2.0675 -1.4619 9 8 1.2907 -3.1182 -0.8580 10 7 0.3889 -1.9188 -2.4920 11 6 -0.4871 -3.0264 -2.8820 12 1 0.0358 -3.9718 -2.7369 13 6 -0.8665 -2.8798 -4.3331 14 1 -0.4921 -2.0453 -4.9075 15 6 -1.6916 -3.8110 -4.9274 16 7 -2.1470 -4.8274 -4.2281 17 14 -2.1624 -3.6289 -6.7259 18 1 -1.5230 -2.4103 -7.2841 19 1 -1.6997 -4.8204 -7.4818 20 1 -3.6382 -3.5115 -6.8418 21 6 -1.7508 -3.0050 -2.0198 22 9 -2.4220 -1.7918 -2.2061 23 9 -2.5872 -4.0630 -2.3918 24 9 -1.3986 -3.1411 -0.6727 25 1 -0.3634 0.4156 -0.9399 26 1 -0.3633 0.6063 0.8299 27 1 -0.3634 -1.0217 0.1101 28 1 1.6607 1.9995 0.7911 29 1 3.1987 1.3513 0.1725 30 1 1.9361 1.8835 -0.9636 31 1 2.5650 -0.3970 1.9149 32 1 1.4945 -1.7523 1.3506 33 1 4.0710 -0.6687 0.0005 34 1 3.4442 -2.3741 0.0021 35 1 0.3527 -1.0785 -2.9752 36 1 -2.7278 -5.4823 -4.6461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:29 Heat of formation + Delta-G solvation = -167.091658 kcal Electronic energy + Delta-G solvation = -23949.422266 eV Core-core repulsion = 20019.556973 eV Total energy + Delta-G solvation = -3929.865293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.35055 -46.00224 -45.61214 -40.47099 -37.48609 -34.60414 -32.56068 -30.53376 -28.87780 -27.30586 -25.97718 -24.54030 -22.54395 -21.55038 -20.09455 -18.51631 -17.03428 -16.82489 -16.63678 -16.25346 -15.82063 -15.13983 -14.85449 -14.62742 -14.08162 -13.73269 -13.36391 -12.94461 -12.89098 -12.76549 -12.46772 -12.39025 -12.28263 -12.17982 -12.00420 -11.94252 -11.81000 -11.26478 -11.19807 -11.02601 -10.87419 -10.76465 -10.67494 -10.41033 -9.97270 -9.90990 -9.64404 -9.08652 -8.73442 -8.22901 -6.24601 -4.48310 3.16120 3.20433 3.24540 3.27687 3.82687 4.20528 4.52762 4.58833 4.72957 4.90321 4.92759 4.96810 5.28903 5.50723 5.57997 5.67308 5.75013 5.81887 5.87519 5.90175 5.93114 5.95826 6.04763 6.16284 6.23235 6.24856 6.42613 6.53420 6.64803 6.95971 7.21220 7.47882 7.62740 8.36943 8.50197 8.94239 9.19942 10.67107 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.006206 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.082249 B = 4510.668692 C = 4746.052582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.125 4.125 4 C -0.130 4.130 5 C -0.120 4.120 6 C -0.132 4.132 7 H 0.093 0.907 8 C 0.527 3.473 9 O -0.536 6.536 10 N -0.709 5.709 11 C 0.244 3.756 12 H 0.084 0.916 13 C -0.551 4.551 14 H 0.078 0.922 15 C 0.064 3.936 16 N -0.840 5.840 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.418 3.582 22 F -0.209 7.209 23 F -0.138 7.138 24 F -0.217 7.217 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 9.642 5.277 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.182 4.182 4 C -0.167 4.167 5 C -0.157 4.157 6 C -0.154 4.154 7 H 0.111 0.889 8 C 0.313 3.687 9 O -0.413 6.413 10 N -0.358 5.358 11 C 0.139 3.861 12 H 0.101 0.899 13 C -0.588 4.588 14 H 0.096 0.904 15 C -0.144 4.144 16 N -0.473 5.473 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.362 3.638 22 F -0.191 7.191 23 F -0.119 7.119 24 F -0.199 7.199 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.227 8.675 5.715 12.111 hybrid contribution -0.682 0.466 -1.051 1.337 sum 5.545 9.141 4.664 11.665 Atomic orbital electron populations 1.21855 0.93597 1.02969 1.01747 1.21730 0.95707 0.94179 0.95585 1.21581 1.00373 0.94247 1.02012 1.23039 0.98321 0.99154 0.96170 1.22710 0.95766 1.02483 0.94786 1.22634 0.97765 0.96444 0.98524 0.88901 1.19920 0.80494 0.88359 0.79942 1.90674 1.68778 1.28672 1.53161 1.46062 1.38937 1.17644 1.33171 1.19701 0.83611 0.89115 0.93703 0.89865 1.20927 1.33300 1.12177 0.92443 0.90440 1.25093 0.94904 0.94978 0.99472 1.70414 1.30560 1.11476 1.34871 0.86167 0.78413 0.78367 0.82937 1.19405 1.20557 1.20554 1.23127 0.89591 0.73523 0.77597 1.92985 1.83308 1.47611 1.95205 1.93402 1.73595 1.55378 1.89504 1.93056 1.92299 1.95699 1.38883 0.92277 0.92650 0.91576 0.92220 0.92396 0.92217 0.91779 0.89316 0.90033 0.90177 0.76864 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.42 37.16 0.31 -1.82 16 2 C -0.07 -0.93 1.34 -153.70 -0.21 -1.14 16 3 C -0.12 -1.24 9.07 37.16 0.34 -0.91 16 4 C -0.13 -1.74 6.83 -25.92 -0.18 -1.91 16 5 C -0.12 -1.59 7.09 -25.82 -0.18 -1.77 16 6 C -0.13 -1.93 3.87 -90.86 -0.35 -2.28 16 7 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 8 C 0.53 10.27 4.92 -10.99 -0.05 10.22 16 9 O -0.54 -12.41 14.06 5.56 0.08 -12.33 16 10 N -0.71 -14.40 4.93 -54.93 -0.27 -14.67 16 11 C 0.24 6.05 2.21 -69.09 -0.15 5.90 16 12 H 0.08 2.32 7.58 -51.92 -0.39 1.93 16 13 C -0.55 -14.05 8.46 -34.44 -0.29 -14.34 16 14 H 0.08 1.87 7.74 -52.48 -0.41 1.46 16 15 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.10 9.50 55.43 0.53 -22.57 16 17 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 C 0.42 10.66 2.81 37.15 0.10 10.77 16 22 F -0.21 -5.12 16.94 2.25 0.04 -5.08 16 23 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 24 F -0.22 -5.47 14.92 2.25 0.03 -5.44 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.20 6.32 -51.93 -0.33 0.88 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.51 7.34 -51.93 -0.38 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.09 1.43 7.69 -51.93 -0.40 1.03 16 33 H 0.08 0.86 7.64 -51.93 -0.40 0.46 16 34 H 0.08 1.21 7.55 -51.93 -0.39 0.81 16 35 H 0.40 7.08 8.54 -40.82 -0.35 6.73 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -29.22 301.80 -5.50 -34.72 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.71 Total: 5.26 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.75 Total: 4.29 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.26 Total: -37.24 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 9 Polarization: -14.42 SS G_CDS: 0.10 Total: -14.31 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.22 -5.50 -34.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.370 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds