Wall clock time and date at job start Tue Mar 31 2020 00:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 112.84894 * 2 1 4 4 C 1.53780 * 113.61572 * 131.20124 * 2 1 3 5 5 C 1.53780 * 87.08354 * 139.97949 * 4 2 1 6 6 C 1.53780 * 113.60991 * 228.80643 * 2 1 3 7 7 H 1.09002 * 113.61297 * 105.47237 * 6 2 1 8 8 C 1.50701 * 113.61807 * 334.56724 * 6 2 1 9 9 O 1.21278 * 119.99622 * 270.41571 * 8 6 2 10 10 N 1.34774 * 119.99916 * 90.41168 * 8 6 2 11 11 C 1.46502 * 119.99848 * 180.02562 * 10 8 6 12 12 H 1.09009 * 109.46951 * 325.00244 * 11 10 8 13 13 C 1.50693 * 109.47165 * 205.00197 * 11 10 8 14 14 H 1.08007 * 120.00358 * 0.02562 * 13 11 10 15 15 C 1.37881 * 120.00185 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99650 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00064 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46851 * 119.99950 * 17 15 13 20 20 H 1.48498 * 109.46898 * 239.99667 * 17 15 13 21 21 C 1.52995 * 109.47076 * 85.00187 * 11 10 8 22 22 F 1.39895 * 109.47256 * 60.00206 * 21 11 10 23 23 F 1.39899 * 109.47267 * 180.02562 * 21 11 10 24 24 F 1.39902 * 109.47224 * 300.00158 * 21 11 10 25 25 H 1.09006 * 109.47578 * 66.14817 * 1 2 3 26 26 H 1.09007 * 109.47005 * 306.14983 * 1 2 3 27 27 H 1.09000 * 109.47363 * 186.15213 * 1 2 3 28 28 H 1.09000 * 109.47105 * 50.33359 * 3 2 1 29 29 H 1.08996 * 109.46730 * 170.33674 * 3 2 1 30 30 H 1.09002 * 109.47094 * 290.33669 * 3 2 1 31 31 H 1.09002 * 113.60914 * 254.52956 * 4 2 1 32 32 H 1.09005 * 113.61490 * 25.42587 * 4 2 1 33 33 H 1.08998 * 113.61193 * 89.11097 * 5 4 2 34 34 H 1.08998 * 113.61124 * 220.02376 * 5 4 2 35 35 H 0.96999 * 120.00158 * 0.02562 * 10 8 6 36 36 H 0.97001 * 119.99621 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 3.1923 -1.3136 0.0011 6 6 2.1459 -0.9280 -1.0603 7 1 2.5649 -0.3969 -1.9150 8 6 1.2451 -2.0675 -1.4619 9 8 1.2907 -3.1182 -0.8580 10 7 0.3889 -1.9188 -2.4920 11 6 -0.4871 -3.0264 -2.8820 12 1 0.0358 -3.9718 -2.7369 13 6 -0.8665 -2.8798 -4.3331 14 1 -0.4921 -2.0453 -4.9075 15 6 -1.6916 -3.8110 -4.9274 16 7 -2.1470 -4.8274 -4.2281 17 14 -2.1624 -3.6289 -6.7259 18 1 -1.5230 -2.4103 -7.2841 19 1 -1.6997 -4.8204 -7.4818 20 1 -3.6382 -3.5115 -6.8418 21 6 -1.7508 -3.0050 -2.0198 22 9 -2.4220 -1.7918 -2.2061 23 9 -2.5872 -4.0630 -2.3918 24 9 -1.3986 -3.1411 -0.6727 25 1 -0.3634 0.4156 -0.9399 26 1 -0.3633 0.6063 0.8299 27 1 -0.3634 -1.0217 0.1101 28 1 1.6607 1.9995 0.7911 29 1 3.1987 1.3513 0.1725 30 1 1.9361 1.8835 -0.9636 31 1 2.5650 -0.3970 1.9149 32 1 1.4945 -1.7523 1.3506 33 1 4.0710 -0.6687 0.0005 34 1 3.4442 -2.3741 0.0021 35 1 0.3527 -1.0785 -2.9752 36 1 -2.7278 -5.4823 -4.6461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:28 Heat of formation + Delta-G solvation = -185.181203 kcal Electronic energy + Delta-G solvation = -23950.206688 eV Core-core repulsion = 20019.556973 eV Total energy + Delta-G solvation = -3930.649715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.43655 -48.06566 -47.74986 -41.77120 -38.94641 -36.44344 -34.46459 -31.58630 -30.69583 -28.27722 -27.32721 -26.54558 -23.88781 -23.14524 -21.72583 -20.02861 -18.92489 -18.81703 -18.64588 -17.79060 -17.54571 -16.81264 -16.34677 -16.02075 -15.36459 -15.22071 -14.99167 -14.78194 -14.63993 -14.48830 -14.33281 -14.19032 -14.03825 -13.87286 -13.81507 -13.12289 -13.06476 -12.90863 -12.74970 -12.67264 -12.36972 -12.23129 -12.04988 -11.77653 -11.55664 -11.05437 -10.97715 -10.71795 -10.65656 -10.03359 -8.23412 -6.54428 1.44322 1.45426 1.58728 1.66701 2.21393 2.39293 2.53298 2.92142 3.48588 3.57248 3.70630 3.78573 3.87333 3.88811 4.14427 4.28870 4.32045 4.59144 4.68200 4.77361 4.84356 4.90942 4.92208 5.02594 5.10286 5.17735 5.22116 5.34993 5.41488 5.44134 5.54281 5.63667 5.66911 6.51112 6.76140 7.15520 7.40415 8.69667 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.026889 B = 0.006206 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.082249 B = 4510.668692 C = 4746.052582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.119 4.119 4 C -0.133 4.133 5 C -0.112 4.112 6 C -0.135 4.135 7 H 0.123 0.877 8 C 0.522 3.478 9 O -0.580 6.580 10 N -0.703 5.703 11 C 0.252 3.748 12 H 0.042 0.958 13 C -0.561 4.561 14 H 0.093 0.907 15 C 0.013 3.987 16 N -0.876 5.876 17 Si 0.984 3.016 18 H -0.254 1.254 19 H -0.277 1.277 20 H -0.281 1.281 21 C 0.416 3.584 22 F -0.202 7.202 23 F -0.153 7.153 24 F -0.219 7.219 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.123 0.877 34 H 0.053 0.947 35 H 0.412 0.588 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.699 12.534 4.513 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.060 4.060 3 C -0.176 4.176 4 C -0.171 4.171 5 C -0.150 4.150 6 C -0.157 4.157 7 H 0.141 0.859 8 C 0.311 3.689 9 O -0.460 6.460 10 N -0.354 5.354 11 C 0.145 3.855 12 H 0.060 0.940 13 C -0.598 4.598 14 H 0.111 0.889 15 C -0.192 4.192 16 N -0.511 5.511 17 Si 0.807 3.193 18 H -0.177 1.177 19 H -0.203 1.203 20 H -0.207 1.207 21 C 0.360 3.640 22 F -0.184 7.184 23 F -0.134 7.134 24 F -0.201 7.201 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.072 0.928 35 H 0.248 0.752 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.590 11.609 4.952 14.728 hybrid contribution -1.112 -0.465 -0.729 1.408 sum 6.479 11.144 4.224 13.565 Atomic orbital electron populations 1.21840 0.95333 1.00491 1.02515 1.21794 0.94317 0.95914 0.94010 1.21584 1.01382 0.91433 1.03171 1.22996 0.98028 0.98453 0.97597 1.22788 0.96657 1.01818 0.93696 1.22705 0.97454 0.95060 1.00433 0.85861 1.20885 0.80213 0.89187 0.78663 1.90651 1.70017 1.31006 1.54327 1.45943 1.38542 1.17069 1.33798 1.19270 0.83465 0.89015 0.93798 0.93993 1.21277 1.33190 1.12596 0.92706 0.88947 1.26035 0.94775 0.94503 1.03880 1.70549 1.31294 1.12395 1.36825 0.85104 0.77840 0.78857 0.77491 1.17730 1.20295 1.20658 1.23261 0.89808 0.73317 0.77660 1.92981 1.83210 1.47031 1.95179 1.93370 1.74130 1.56226 1.89690 1.93054 1.92292 1.95722 1.39008 0.92221 0.90879 0.95887 0.91062 0.90444 0.91156 0.88940 0.93231 0.85913 0.92791 0.75217 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.42 71.98 0.61 -3.52 16 2 C -0.06 -1.40 1.34 -51.65 -0.07 -1.47 16 3 C -0.12 -1.79 9.07 71.98 0.65 -1.14 16 4 C -0.13 -3.38 6.83 31.12 0.21 -3.17 16 5 C -0.11 -2.73 7.09 31.18 0.22 -2.51 16 6 C -0.14 -3.69 3.87 -10.95 -0.04 -3.73 16 7 H 0.12 2.63 8.10 -2.39 -0.02 2.61 16 8 C 0.52 20.60 4.92 87.66 0.43 21.03 16 9 O -0.58 -28.19 14.06 -3.02 -0.04 -28.23 16 10 N -0.70 -28.78 4.93 -446.11 -2.20 -30.98 16 11 C 0.25 12.83 2.21 44.24 0.10 12.93 16 12 H 0.04 2.49 7.58 -2.38 -0.02 2.47 16 13 C -0.56 -28.61 8.46 25.60 0.22 -28.40 16 14 H 0.09 4.33 7.74 -2.91 -0.02 4.31 16 15 C 0.01 0.68 5.20 84.66 0.44 1.12 16 16 N -0.88 -49.33 9.50 21.45 0.20 -49.12 16 17 Si 0.98 40.76 29.54 68.60 2.03 42.78 16 18 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 C 0.42 21.89 2.81 71.98 0.20 22.10 16 22 F -0.20 -10.00 16.94 44.97 0.76 -9.24 16 23 F -0.15 -8.81 12.91 44.97 0.58 -8.23 16 24 F -0.22 -11.52 14.92 44.97 0.67 -10.85 16 25 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.02 0.84 6.32 -2.39 -0.02 0.82 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.91 7.34 -2.39 -0.02 0.90 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.05 1.64 7.69 -2.38 -0.02 1.63 16 33 H 0.12 2.01 7.64 -2.39 -0.02 2.00 16 34 H 0.05 1.61 7.55 -2.39 -0.02 1.59 16 35 H 0.41 14.25 8.54 -92.71 -0.79 13.46 16 36 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -66.17 301.80 5.28 -60.88 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.31 Total: 19.73 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 2.97 Total: 13.25 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -2.00 Total: -80.10 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.04 Total: -28.23 kcal Atomic # 9 Polarization: -30.33 SS G_CDS: 2.01 Total: -28.32 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -66.17 5.28 -60.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.299 kcal (2) G-P(sol) polarization free energy of solvation -66.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds