Wall clock time and date at job start Tue Mar 31 2020 00:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.84960 * 2 1 4 4 C 1.53783 * 113.61170 * 131.19445 * 2 1 3 5 5 C 1.53777 * 87.08094 * 139.97977 * 4 2 1 6 6 C 1.53773 * 113.61215 * 228.79900 * 2 1 3 7 7 H 1.09006 * 113.62259 * 334.57342 * 6 2 1 8 8 C 1.50705 * 113.61209 * 105.47324 * 6 2 1 9 9 O 1.21276 * 120.00250 * 335.99721 * 8 6 2 10 10 N 1.34777 * 119.99786 * 155.99047 * 8 6 2 11 11 C 1.46499 * 119.99884 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47360 * 35.00289 * 11 10 8 13 13 C 1.50704 * 109.47328 * 155.00296 * 11 10 8 14 14 H 1.08001 * 119.99438 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99974 * 180.02562 * 13 11 10 16 16 N 1.31508 * 119.99985 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99732 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47119 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46910 * 119.99923 * 17 15 13 20 20 H 1.48496 * 109.46986 * 240.00003 * 17 15 13 21 21 C 1.53004 * 109.47493 * 275.00519 * 11 10 8 22 22 F 1.39901 * 109.47127 * 59.99965 * 21 11 10 23 23 F 1.39901 * 109.47292 * 180.02562 * 21 11 10 24 24 F 1.39905 * 109.46572 * 300.00011 * 21 11 10 25 25 H 1.09003 * 109.46933 * 69.66549 * 1 2 3 26 26 H 1.09001 * 109.46964 * 309.67186 * 1 2 3 27 27 H 1.08992 * 109.47343 * 189.66738 * 1 2 3 28 28 H 1.09000 * 109.46936 * 71.26865 * 3 2 1 29 29 H 1.08995 * 109.46884 * 191.26806 * 3 2 1 30 30 H 1.08995 * 109.47148 * 311.26810 * 3 2 1 31 31 H 1.08999 * 113.61186 * 254.53329 * 4 2 1 32 32 H 1.09000 * 113.60898 * 25.34801 * 4 2 1 33 33 H 1.08995 * 113.61197 * 89.11621 * 5 4 2 34 34 H 1.08995 * 113.61579 * 219.93531 * 5 4 2 35 35 H 0.96997 * 120.00315 * 0.02562 * 10 8 6 36 36 H 0.97000 * 119.99656 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 3.1923 -1.3137 0.0014 6 6 2.1460 -0.9281 -1.0601 7 1 1.4945 -1.7523 -1.3506 8 6 2.7253 -0.1939 -2.2419 9 8 2.3230 0.9149 -2.5236 10 7 3.6907 -0.7696 -2.9856 11 6 4.2535 -0.0562 -4.1347 12 1 4.2945 1.0108 -3.9154 13 6 5.6445 -0.5662 -4.4106 14 1 6.0671 -1.3437 -3.7915 15 6 6.3778 -0.0394 -5.4526 16 7 5.8633 0.9077 -6.2060 17 14 8.1023 -0.6711 -5.7941 18 1 8.4458 -1.7290 -4.8101 19 1 8.1605 -1.2337 -7.1671 20 1 9.0717 0.4476 -5.6759 21 6 3.3714 -0.2907 -5.3627 22 9 2.0801 0.1828 -5.1067 23 9 3.9092 0.3901 -6.4602 24 9 3.3187 -1.6602 -5.6442 25 1 -0.3633 0.3571 -0.9637 26 1 -0.3633 0.6561 0.7910 27 1 -0.3633 -1.0130 0.1726 28 1 1.9611 1.8729 0.9732 29 1 3.1940 1.3533 -0.2008 30 1 1.6406 2.0079 -0.7724 31 1 2.5649 -0.3969 1.9150 32 1 1.4938 -1.7513 1.3517 33 1 4.0710 -0.6688 0.0008 34 1 3.4453 -2.3738 0.0034 35 1 4.0123 -1.6566 -2.7605 36 1 6.3794 1.2785 -6.9389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:31 Heat of formation + Delta-G solvation = -166.275302 kcal Electronic energy + Delta-G solvation = -23601.314831 eV Core-core repulsion = 19671.484937 eV Total energy + Delta-G solvation = -3929.829893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.33289 -45.98960 -45.59806 -40.37132 -37.56298 -34.58567 -32.58449 -30.60195 -28.65882 -27.20199 -26.16670 -24.52959 -22.46802 -21.65253 -19.93902 -18.38469 -17.34426 -16.81210 -16.64497 -16.35108 -15.71998 -15.13608 -14.86246 -14.49032 -14.06778 -13.81320 -13.19463 -13.05003 -12.91236 -12.59254 -12.51083 -12.38978 -12.27636 -12.00936 -11.96391 -11.81896 -11.70784 -11.45590 -11.18657 -11.08233 -10.88160 -10.79231 -10.58248 -10.40506 -10.24056 -9.94693 -9.62766 -8.86804 -8.72411 -8.18586 -6.23768 -4.47408 3.16995 3.24426 3.27976 3.30815 3.88935 4.21478 4.53393 4.57242 4.64468 4.83280 4.86563 4.93482 5.37666 5.49869 5.58681 5.68604 5.74859 5.82318 5.87938 5.90601 5.91099 5.95830 6.10895 6.15946 6.23319 6.26541 6.37734 6.56014 6.74969 6.97518 7.24894 7.49149 7.63717 8.40042 8.51380 8.98011 9.20984 10.67941 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.006069 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.545107 B = 4612.603195 C = 5161.776288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.130 4.130 7 H 0.111 0.889 8 C 0.515 3.485 9 O -0.532 6.532 10 N -0.712 5.712 11 C 0.244 3.756 12 H 0.084 0.916 13 C -0.551 4.551 14 H 0.077 0.923 15 C 0.064 3.936 16 N -0.840 5.840 17 Si 0.914 3.086 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.417 3.583 22 F -0.218 7.218 23 F -0.137 7.137 24 F -0.210 7.210 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -4.293 10.663 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.179 4.179 4 C -0.172 4.172 5 C -0.166 4.166 6 C -0.151 4.151 7 H 0.129 0.871 8 C 0.301 3.699 9 O -0.409 6.409 10 N -0.361 5.361 11 C 0.139 3.861 12 H 0.101 0.899 13 C -0.588 4.588 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.473 5.473 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.360 3.640 22 F -0.200 7.200 23 F -0.119 7.119 24 F -0.192 7.192 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.231 0.769 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.568 -3.339 10.246 12.129 hybrid contribution 0.832 -0.896 -0.568 1.348 sum -4.735 -4.235 9.678 11.576 Atomic orbital electron populations 1.21723 0.94212 1.01132 1.02130 1.21635 0.95248 0.95116 0.93996 1.21614 1.00952 0.94325 1.01022 1.23033 0.98148 0.99257 0.96748 1.22868 0.97025 1.01787 0.94935 1.22940 0.99339 0.99791 0.93023 0.87128 1.20400 0.79609 0.86632 0.83308 1.90661 1.60183 1.19744 1.70313 1.46111 1.39134 1.20844 1.30037 1.19688 0.91064 0.96999 0.78393 0.89863 1.20928 0.96842 1.23812 1.17200 0.90469 1.25092 0.99382 0.94977 0.95000 1.70412 1.35476 1.24224 1.17227 0.86173 0.82528 0.78790 0.78428 1.19407 1.20567 1.20574 1.23164 0.78142 0.72912 0.89741 1.93067 1.43794 1.88621 1.94509 1.93402 1.83552 1.78844 1.56063 1.92985 1.96558 1.34645 1.95022 0.92045 0.92701 0.92938 0.93600 0.92789 0.90409 0.91277 0.90139 0.89472 0.90862 0.76923 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.18 37.16 0.34 -1.25 16 2 C -0.06 -0.78 1.20 -153.70 -0.18 -0.96 16 3 C -0.12 -1.78 7.50 37.16 0.28 -1.50 16 4 C -0.13 -1.43 7.23 -25.92 -0.19 -1.61 16 5 C -0.13 -1.53 7.26 -25.83 -0.19 -1.71 16 6 C -0.13 -1.85 3.66 -90.87 -0.33 -2.19 16 7 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 8 C 0.51 9.93 6.05 -10.98 -0.07 9.86 16 9 O -0.53 -12.08 12.60 5.56 0.07 -12.01 16 10 N -0.71 -14.46 4.95 -54.93 -0.27 -14.73 16 11 C 0.24 6.06 2.21 -69.08 -0.15 5.91 16 12 H 0.08 2.32 7.58 -51.93 -0.39 1.92 16 13 C -0.55 -14.04 8.46 -34.44 -0.29 -14.33 16 14 H 0.08 1.86 7.74 -52.49 -0.41 1.46 16 15 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.13 9.50 55.43 0.53 -22.60 16 17 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.42 10.77 2.81 37.16 0.10 10.87 16 22 F -0.22 -5.60 15.68 2.25 0.04 -5.56 16 23 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 24 F -0.21 -5.23 16.94 2.25 0.04 -5.20 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.53 7.98 -51.93 -0.41 0.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.86 6.83 -51.93 -0.35 0.50 16 30 H 0.08 1.31 6.87 -51.93 -0.36 0.96 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.08 0.74 7.99 -51.93 -0.41 0.32 16 33 H 0.09 1.13 7.61 -51.93 -0.40 0.73 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.40 7.05 8.54 -40.82 -0.35 6.70 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -29.26 302.42 -5.56 -34.82 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.75 Total: 4.79 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.77 Total: 4.67 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.25 Total: -37.33 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 0.10 Total: -14.57 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.26 -5.56 -34.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.459 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds