Wall clock time and date at job start Tue Mar 31 2020 00:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 112.84960 * 2 1 4 4 C 1.53783 * 113.61170 * 131.19445 * 2 1 3 5 5 C 1.53777 * 87.08094 * 139.97977 * 4 2 1 6 6 C 1.53773 * 113.61215 * 228.79900 * 2 1 3 7 7 H 1.09006 * 113.62259 * 334.57342 * 6 2 1 8 8 C 1.50705 * 113.61209 * 105.47324 * 6 2 1 9 9 O 1.21276 * 120.00250 * 335.99721 * 8 6 2 10 10 N 1.34777 * 119.99786 * 155.99047 * 8 6 2 11 11 C 1.46499 * 119.99884 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47360 * 35.00289 * 11 10 8 13 13 C 1.50704 * 109.47328 * 155.00296 * 11 10 8 14 14 H 1.08001 * 119.99438 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99974 * 180.02562 * 13 11 10 16 16 N 1.31508 * 119.99985 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99732 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47119 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46910 * 119.99923 * 17 15 13 20 20 H 1.48496 * 109.46986 * 240.00003 * 17 15 13 21 21 C 1.53004 * 109.47493 * 275.00519 * 11 10 8 22 22 F 1.39901 * 109.47127 * 59.99965 * 21 11 10 23 23 F 1.39901 * 109.47292 * 180.02562 * 21 11 10 24 24 F 1.39905 * 109.46572 * 300.00011 * 21 11 10 25 25 H 1.09003 * 109.46933 * 69.66549 * 1 2 3 26 26 H 1.09001 * 109.46964 * 309.67186 * 1 2 3 27 27 H 1.08992 * 109.47343 * 189.66738 * 1 2 3 28 28 H 1.09000 * 109.46936 * 71.26865 * 3 2 1 29 29 H 1.08995 * 109.46884 * 191.26806 * 3 2 1 30 30 H 1.08995 * 109.47148 * 311.26810 * 3 2 1 31 31 H 1.08999 * 113.61186 * 254.53329 * 4 2 1 32 32 H 1.09000 * 113.60898 * 25.34801 * 4 2 1 33 33 H 1.08995 * 113.61197 * 89.11621 * 5 4 2 34 34 H 1.08995 * 113.61579 * 219.93531 * 5 4 2 35 35 H 0.96997 * 120.00315 * 0.02562 * 10 8 6 36 36 H 0.97000 * 119.99656 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 3.1923 -1.3137 0.0014 6 6 2.1460 -0.9281 -1.0601 7 1 1.4945 -1.7523 -1.3506 8 6 2.7253 -0.1939 -2.2419 9 8 2.3230 0.9149 -2.5236 10 7 3.6907 -0.7696 -2.9856 11 6 4.2535 -0.0562 -4.1347 12 1 4.2945 1.0108 -3.9154 13 6 5.6445 -0.5662 -4.4106 14 1 6.0671 -1.3437 -3.7915 15 6 6.3778 -0.0394 -5.4526 16 7 5.8633 0.9077 -6.2060 17 14 8.1023 -0.6711 -5.7941 18 1 8.4458 -1.7290 -4.8101 19 1 8.1605 -1.2337 -7.1671 20 1 9.0717 0.4476 -5.6759 21 6 3.3714 -0.2907 -5.3627 22 9 2.0801 0.1828 -5.1067 23 9 3.9092 0.3901 -6.4602 24 9 3.3187 -1.6602 -5.6442 25 1 -0.3633 0.3571 -0.9637 26 1 -0.3633 0.6561 0.7910 27 1 -0.3633 -1.0130 0.1726 28 1 1.9611 1.8729 0.9732 29 1 3.1940 1.3533 -0.2008 30 1 1.6406 2.0079 -0.7724 31 1 2.5649 -0.3969 1.9150 32 1 1.4938 -1.7513 1.3517 33 1 4.0710 -0.6688 0.0008 34 1 3.4453 -2.3738 0.0034 35 1 4.0123 -1.6566 -2.7605 36 1 6.3794 1.2785 -6.9389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:30 Heat of formation + Delta-G solvation = -184.058742 kcal Electronic energy + Delta-G solvation = -23602.085978 eV Core-core repulsion = 19671.484937 eV Total energy + Delta-G solvation = -3930.601041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.43423 -48.07161 -47.74486 -41.61747 -38.98904 -36.41355 -34.46439 -31.73596 -30.36450 -28.27977 -27.45885 -26.54628 -23.56661 -23.36783 -21.58792 -19.76237 -19.00260 -18.84726 -18.68192 -18.04793 -17.44258 -16.86341 -16.29107 -15.97164 -15.35493 -15.09072 -15.00903 -14.83974 -14.49837 -14.40991 -14.31299 -14.08446 -14.02691 -13.89970 -13.84293 -13.10559 -13.06161 -12.81940 -12.68485 -12.65437 -12.42322 -12.21675 -12.13540 -11.67758 -11.55202 -11.24148 -10.94139 -10.70834 -10.38346 -9.96038 -8.22547 -6.53351 1.44618 1.45834 1.58979 1.76432 2.25738 2.41792 2.54940 2.92964 3.47035 3.62788 3.72473 3.80567 3.86301 3.89561 4.11357 4.31818 4.37246 4.61580 4.72479 4.83524 4.87042 4.93501 4.97805 5.03750 5.09530 5.17300 5.28707 5.34026 5.46671 5.54981 5.59245 5.63519 5.66792 6.52372 6.80862 7.16741 7.45879 8.70479 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.006069 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.545107 B = 4612.603195 C = 5161.776288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C -0.118 4.118 4 C -0.114 4.114 5 C -0.124 4.124 6 C -0.132 4.132 7 H 0.132 0.868 8 C 0.508 3.492 9 O -0.573 6.573 10 N -0.707 5.707 11 C 0.252 3.748 12 H 0.043 0.957 13 C -0.560 4.560 14 H 0.092 0.908 15 C 0.013 3.987 16 N -0.877 5.877 17 Si 0.983 3.017 18 H -0.254 1.254 19 H -0.281 1.281 20 H -0.278 1.278 21 C 0.413 3.587 22 F -0.220 7.220 23 F -0.152 7.152 24 F -0.203 7.203 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.411 0.589 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 -6.541 12.715 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 C -0.175 4.175 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.153 4.153 7 H 0.150 0.850 8 C 0.296 3.704 9 O -0.452 6.452 10 N -0.358 5.358 11 C 0.144 3.856 12 H 0.061 0.939 13 C -0.596 4.596 14 H 0.110 0.890 15 C -0.192 4.192 16 N -0.511 5.511 17 Si 0.807 3.193 18 H -0.177 1.177 19 H -0.207 1.207 20 H -0.203 1.203 21 C 0.357 3.643 22 F -0.202 7.202 23 F -0.133 7.133 24 F -0.185 7.185 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.252 -5.619 12.332 14.534 hybrid contribution 0.670 -0.136 -1.214 1.393 sum -4.582 -5.755 11.119 13.332 Atomic orbital electron populations 1.21706 0.93165 1.02776 1.01230 1.21748 0.96137 0.94211 0.94826 1.21529 0.99279 0.95641 1.01073 1.22981 0.97257 0.99005 0.95857 1.22879 0.96220 1.03006 0.94007 1.23149 1.00751 1.00294 0.91095 0.85042 1.21441 0.78606 0.86371 0.83951 1.90650 1.61246 1.21807 1.71483 1.46022 1.39515 1.21260 1.29005 1.19259 0.91431 0.95376 0.79501 0.93910 1.21273 0.97035 1.23973 1.17350 0.89015 1.26029 1.03403 0.94992 0.94775 1.70544 1.37145 1.25557 1.17832 0.85113 0.77454 0.78493 0.78280 1.17740 1.20690 1.20328 1.23351 0.78157 0.73010 0.89785 1.93057 1.43940 1.88710 1.94489 1.93373 1.83813 1.79246 1.56881 1.92982 1.96541 1.33997 1.95004 0.94602 0.91393 0.90607 0.91265 0.94875 0.93710 0.90163 0.87441 0.91059 0.88326 0.75273 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.18 71.98 0.66 -2.16 16 2 C -0.07 -1.66 1.20 -51.66 -0.06 -1.72 16 3 C -0.12 -3.45 7.50 71.98 0.54 -2.91 16 4 C -0.11 -1.95 7.23 31.12 0.22 -1.73 16 5 C -0.12 -2.56 7.26 31.18 0.23 -2.34 16 6 C -0.13 -3.53 3.66 -10.95 -0.04 -3.57 16 7 H 0.13 3.01 8.10 -2.38 -0.02 2.99 16 8 C 0.51 19.76 6.05 87.66 0.53 20.29 16 9 O -0.57 -27.12 12.60 -3.02 -0.04 -27.16 16 10 N -0.71 -28.78 4.95 -446.09 -2.21 -30.99 16 11 C 0.25 12.79 2.21 44.25 0.10 12.89 16 12 H 0.04 2.52 7.58 -2.39 -0.02 2.51 16 13 C -0.56 -28.49 8.46 25.60 0.22 -28.27 16 14 H 0.09 4.30 7.74 -2.91 -0.02 4.27 16 15 C 0.01 0.68 5.20 84.66 0.44 1.12 16 16 N -0.88 -49.27 9.50 21.45 0.20 -49.07 16 17 Si 0.98 40.74 29.54 68.60 2.03 42.76 16 18 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.41 21.82 2.81 71.98 0.20 22.02 16 22 F -0.22 -11.61 15.68 44.97 0.71 -10.90 16 23 F -0.15 -8.74 12.91 44.97 0.58 -8.16 16 24 F -0.20 -10.11 16.94 44.97 0.76 -9.35 16 25 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.27 7.98 -2.39 -0.02 1.25 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.03 1.07 6.83 -2.39 -0.02 1.05 16 30 H 0.04 1.58 6.87 -2.39 -0.02 1.56 16 31 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.11 1.35 7.99 -2.39 -0.02 1.33 16 33 H 0.07 1.73 7.61 -2.39 -0.02 1.71 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 14.14 8.54 -92.71 -0.79 13.35 16 36 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -65.22 302.42 5.38 -59.84 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.31 Total: 19.41 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 3.04 Total: 13.62 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -2.01 Total: -80.06 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.04 Total: -27.16 kcal Atomic # 9 Polarization: -30.46 SS G_CDS: 2.05 Total: -28.41 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -65.22 5.38 -59.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.219 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds