Wall clock time and date at job start Tue Mar 31 2020 00:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47209 * 2 1 4 4 C 1.50694 * 109.47311 * 119.99999 * 2 1 3 5 5 O 1.21283 * 120.00131 * 120.00058 * 4 2 1 6 6 N 1.34779 * 120.00237 * 300.00222 * 4 2 1 7 7 C 1.46495 * 120.00059 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.47232 * 324.99441 * 7 6 4 9 9 C 1.50707 * 109.46930 * 205.00004 * 7 6 4 10 10 H 1.07994 * 119.99813 * 354.16580 * 9 7 6 11 11 C 1.37875 * 119.99980 * 174.17196 * 9 7 6 12 12 N 1.31513 * 120.00140 * 332.17027 * 11 9 7 13 13 Si 1.86805 * 119.99870 * 152.44736 * 11 9 7 14 14 H 1.48495 * 109.46898 * 269.72062 * 13 11 9 15 15 H 1.48497 * 109.46994 * 29.72541 * 13 11 9 16 16 H 1.48507 * 109.46683 * 149.72399 * 13 11 9 17 17 C 1.53002 * 109.47646 * 84.99570 * 7 6 4 18 18 F 1.39904 * 109.47165 * 176.81193 * 17 7 6 19 19 F 1.39898 * 109.47073 * 296.81389 * 17 7 6 20 20 F 1.39898 * 109.46934 * 56.81232 * 17 7 6 21 21 C 1.53002 * 109.47318 * 240.00243 * 2 1 3 22 22 C 1.52996 * 117.50317 * 128.74141 * 21 2 1 23 23 C 1.52999 * 117.49573 * 60.08260 * 21 2 1 24 24 H 1.09003 * 109.46852 * 300.00023 * 1 2 3 25 25 H 1.08994 * 109.47125 * 59.99874 * 1 2 3 26 26 H 1.08993 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47172 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46601 * 300.00266 * 3 2 1 29 29 H 1.08998 * 109.46774 * 60.00105 * 3 2 1 30 30 H 0.97003 * 119.99876 * 359.97438 * 6 4 2 31 31 H 0.96997 * 120.00172 * 354.74589 * 12 11 9 32 32 H 1.09000 * 115.54671 * 274.42177 * 21 2 1 33 33 H 1.09003 * 117.49364 * 0.02562 * 22 21 2 34 34 H 1.08999 * 117.49828 * 145.01965 * 22 21 2 35 35 H 1.09007 * 117.49743 * 214.98526 * 23 21 2 36 36 H 1.09001 * 117.50120 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1957 -0.9403 3.6506 8 1 2.2327 -2.0131 3.4614 9 6 1.2658 -0.6656 4.8044 10 1 0.4518 0.0343 4.6870 11 6 1.4545 -1.3078 6.0098 12 7 2.0248 -2.4924 6.0416 13 14 0.8929 -0.4986 7.5971 14 1 1.9984 0.3232 8.1517 15 1 -0.2798 0.3699 7.3220 16 1 0.5138 -1.5459 8.5793 17 6 3.5981 -0.4343 3.9942 18 9 4.0356 -1.0399 5.1771 19 9 4.4771 -0.7541 2.9539 20 9 3.5640 0.9537 4.1659 21 6 2.0401 -0.7212 -1.2493 22 6 3.0763 0.0040 -2.1102 23 6 1.6374 -0.1482 -2.6096 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.1494 0.5389 2.5436 31 1 2.2435 -2.9477 5.2136 32 1 2.1253 -1.8046 -1.1648 33 1 3.3950 0.9948 -1.7863 34 1 3.8431 -0.6023 -2.5923 35 1 1.4581 -0.8547 -3.4201 36 1 1.0095 0.7427 -2.6145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:51 Heat of formation + Delta-G solvation = -180.753874 kcal Electronic energy + Delta-G solvation = -23641.104468 eV Core-core repulsion = 19710.646737 eV Total energy + Delta-G solvation = -3930.457731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.76873 -46.32389 -46.21958 -40.02337 -37.46399 -34.85970 -33.37885 -32.24271 -28.10946 -27.45052 -24.46903 -24.38491 -22.23946 -22.15785 -20.56206 -18.79535 -17.71581 -17.24617 -17.07549 -16.90802 -16.07611 -15.71391 -14.63962 -14.42838 -14.18276 -13.87603 -13.39898 -13.24552 -12.95569 -12.75715 -12.67099 -12.62052 -12.56280 -12.45584 -12.42464 -12.15254 -12.05391 -11.54942 -11.28527 -11.09764 -11.03410 -10.75057 -10.70768 -10.29726 -10.24122 -9.93152 -9.56398 -9.14972 -8.48150 -8.37589 -6.80232 -4.51376 3.12756 3.32261 3.36794 3.51404 3.61017 3.92661 4.19713 4.31377 4.59680 4.85181 4.86511 4.93242 5.06817 5.13696 5.28459 5.44453 5.50541 5.57256 5.58091 5.62984 5.71790 5.76640 5.85158 5.91147 5.96154 6.12876 6.20048 6.24654 6.39673 6.64267 7.03527 7.32487 8.07306 8.22918 8.41015 8.79506 9.16483 10.54495 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.005946 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.335063 B = 4708.164431 C = 5058.795609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.144 4.144 4 C 0.516 3.484 5 O -0.535 6.535 6 N -0.703 5.703 7 C 0.236 3.764 8 H 0.077 0.923 9 C -0.649 4.649 10 H 0.074 0.926 11 C 0.052 3.948 12 N -0.847 5.847 13 Si 1.063 2.937 14 H -0.280 1.280 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.414 3.586 18 F -0.176 7.176 19 F -0.206 7.206 20 F -0.198 7.198 21 C -0.125 4.125 22 C -0.182 4.182 23 C -0.180 4.180 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.400 0.600 31 H 0.278 0.722 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 7.094 -11.447 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.055 4.055 3 C -0.201 4.201 4 C 0.302 3.698 5 O -0.411 6.411 6 N -0.353 5.353 7 C 0.130 3.870 8 H 0.095 0.905 9 C -0.684 4.684 10 H 0.092 0.908 11 C -0.162 4.162 12 N -0.475 5.475 13 Si 0.889 3.111 14 H -0.206 1.206 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.359 3.641 18 F -0.158 7.158 19 F -0.188 7.188 20 F -0.180 7.180 21 C -0.144 4.144 22 C -0.219 4.219 23 C -0.217 4.217 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.988 6.166 -9.880 11.815 hybrid contribution 0.185 0.670 -1.518 1.670 sum -1.803 6.836 -11.398 13.413 Atomic orbital electron populations 1.21810 0.92327 1.02852 1.02371 1.20244 0.96934 0.95810 0.92472 1.21984 1.01905 0.93769 1.02444 1.20425 0.80187 0.84637 0.84589 1.90673 1.37542 1.26288 1.86636 1.45910 1.52491 1.31917 1.04955 1.19655 0.87036 0.95093 0.85254 0.90531 1.21600 1.17312 1.32734 0.96783 0.90835 1.25923 0.94070 0.93823 1.02356 1.70720 1.34020 1.10138 1.32621 0.83669 0.76665 0.75866 0.74933 1.20642 1.20916 1.20777 1.23037 0.91868 0.75173 0.74071 1.93153 1.91036 1.83062 1.48528 1.93099 1.73586 1.92632 1.59439 1.93010 1.97064 1.32433 1.95472 1.22042 1.03088 0.99913 0.89315 1.23116 0.92360 1.02448 1.03962 1.22966 0.98284 1.03115 0.97294 0.91848 0.91672 0.91925 0.91688 0.91587 0.91836 0.76579 0.91125 0.86737 0.88307 0.89079 0.89007 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.21 37.16 0.31 -1.34 16 2 C -0.05 -0.73 0.72 -155.66 -0.11 -0.84 16 3 C -0.14 -1.76 6.97 37.16 0.26 -1.50 16 4 C 0.52 10.02 6.09 -10.99 -0.07 9.96 16 5 O -0.54 -12.42 14.22 5.55 0.08 -12.35 16 6 N -0.70 -14.20 4.73 -54.93 -0.26 -14.46 16 7 C 0.24 5.78 2.00 -69.08 -0.14 5.64 16 8 H 0.08 2.09 6.46 -51.93 -0.34 1.75 16 9 C -0.65 -16.58 8.32 -34.44 -0.29 -16.87 16 10 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 11 C 0.05 1.38 4.23 -17.82 -0.08 1.31 16 12 N -0.85 -23.82 12.35 55.43 0.68 -23.14 16 13 Si 1.06 23.45 29.99 -169.99 -5.10 18.36 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 C 0.41 10.35 2.82 37.16 0.10 10.45 16 18 F -0.18 -4.73 14.71 2.25 0.03 -4.70 16 19 F -0.21 -5.12 15.77 2.25 0.04 -5.08 16 20 F -0.20 -4.69 16.97 2.25 0.04 -4.66 16 21 C -0.13 -1.72 4.75 -90.62 -0.43 -2.15 16 22 C -0.18 -2.16 9.57 -26.70 -0.26 -2.42 16 23 C -0.18 -1.88 9.38 -26.70 -0.25 -2.13 16 24 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16 25 H 0.06 0.64 7.29 -51.93 -0.38 0.26 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.86 6.97 -51.93 -0.36 0.50 16 28 H 0.07 0.65 7.07 -51.93 -0.37 0.28 16 29 H 0.06 0.75 7.56 -51.93 -0.39 0.36 16 30 H 0.40 7.07 7.36 -40.82 -0.30 6.77 16 31 H 0.28 7.94 7.25 -40.82 -0.30 7.65 16 32 H 0.11 1.81 7.47 -51.93 -0.39 1.42 16 33 H 0.10 1.11 5.85 -51.93 -0.30 0.81 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.85 7.07 -51.93 -0.37 0.49 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -29.62 303.33 -5.22 -34.84 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.36 Total: 6.51 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.95 Total: 0.10 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.42 Total: -37.60 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 0.11 Total: -14.43 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.10 Total: 18.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.62 -5.22 -34.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.912 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds