Wall clock time and date at job start Tue Mar 31 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47209 * 2 1 4 4 C 1.50694 * 109.47311 * 119.99999 * 2 1 3 5 5 O 1.21283 * 120.00131 * 120.00058 * 4 2 1 6 6 N 1.34779 * 120.00237 * 300.00222 * 4 2 1 7 7 C 1.46495 * 120.00059 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.47232 * 324.99441 * 7 6 4 9 9 C 1.50707 * 109.46930 * 205.00004 * 7 6 4 10 10 H 1.07994 * 119.99813 * 354.16580 * 9 7 6 11 11 C 1.37875 * 119.99980 * 174.17196 * 9 7 6 12 12 N 1.31513 * 120.00140 * 332.17027 * 11 9 7 13 13 Si 1.86805 * 119.99870 * 152.44736 * 11 9 7 14 14 H 1.48495 * 109.46898 * 269.72062 * 13 11 9 15 15 H 1.48497 * 109.46994 * 29.72541 * 13 11 9 16 16 H 1.48507 * 109.46683 * 149.72399 * 13 11 9 17 17 C 1.53002 * 109.47646 * 84.99570 * 7 6 4 18 18 F 1.39904 * 109.47165 * 176.81193 * 17 7 6 19 19 F 1.39898 * 109.47073 * 296.81389 * 17 7 6 20 20 F 1.39898 * 109.46934 * 56.81232 * 17 7 6 21 21 C 1.53002 * 109.47318 * 240.00243 * 2 1 3 22 22 C 1.52996 * 117.50317 * 128.74141 * 21 2 1 23 23 C 1.52999 * 117.49573 * 60.08260 * 21 2 1 24 24 H 1.09003 * 109.46852 * 300.00023 * 1 2 3 25 25 H 1.08994 * 109.47125 * 59.99874 * 1 2 3 26 26 H 1.08993 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47172 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46601 * 300.00266 * 3 2 1 29 29 H 1.08998 * 109.46774 * 60.00105 * 3 2 1 30 30 H 0.97003 * 119.99876 * 359.97438 * 6 4 2 31 31 H 0.96997 * 120.00172 * 354.74589 * 12 11 9 32 32 H 1.09000 * 115.54671 * 274.42177 * 21 2 1 33 33 H 1.09003 * 117.49364 * 0.02562 * 22 21 2 34 34 H 1.08999 * 117.49828 * 145.01965 * 22 21 2 35 35 H 1.09007 * 117.49743 * 214.98526 * 23 21 2 36 36 H 1.09001 * 117.50120 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1957 -0.9403 3.6506 8 1 2.2327 -2.0131 3.4614 9 6 1.2658 -0.6656 4.8044 10 1 0.4518 0.0343 4.6870 11 6 1.4545 -1.3078 6.0098 12 7 2.0248 -2.4924 6.0416 13 14 0.8929 -0.4986 7.5971 14 1 1.9984 0.3232 8.1517 15 1 -0.2798 0.3699 7.3220 16 1 0.5138 -1.5459 8.5793 17 6 3.5981 -0.4343 3.9942 18 9 4.0356 -1.0399 5.1771 19 9 4.4771 -0.7541 2.9539 20 9 3.5640 0.9537 4.1659 21 6 2.0401 -0.7212 -1.2493 22 6 3.0763 0.0040 -2.1102 23 6 1.6374 -0.1482 -2.6096 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.1494 0.5389 2.5436 31 1 2.2435 -2.9477 5.2136 32 1 2.1253 -1.8046 -1.1648 33 1 3.3950 0.9948 -1.7863 34 1 3.8431 -0.6023 -2.5923 35 1 1.4581 -0.8547 -3.4201 36 1 1.0095 0.7427 -2.6145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:49 Heat of formation + Delta-G solvation = -198.811169 kcal Electronic energy + Delta-G solvation = -23641.887492 eV Core-core repulsion = 19710.646737 eV Total energy + Delta-G solvation = -3931.240754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.81837 -48.35550 -48.29414 -41.40600 -38.73153 -36.71658 -34.90081 -33.73348 -29.96970 -28.40221 -26.52124 -25.54437 -23.94371 -23.07643 -22.17029 -20.38707 -19.44928 -19.19417 -19.06220 -18.46055 -17.74877 -17.11541 -16.06508 -15.84459 -15.56079 -15.49419 -15.25544 -15.20920 -14.81429 -14.65763 -14.55023 -14.51640 -14.43316 -13.84791 -13.69969 -13.27465 -13.17343 -13.02944 -13.00562 -12.56284 -12.45208 -11.99842 -11.90552 -11.75300 -11.48908 -11.26455 -10.93267 -10.66659 -10.47438 -10.18056 -8.89712 -6.60834 1.53217 1.56562 1.64110 1.81167 2.03507 2.23284 2.49261 2.84923 2.94327 3.38437 3.51445 3.56944 3.58456 3.79155 3.96759 4.08451 4.14745 4.32251 4.46576 4.59961 4.70480 4.79155 4.84502 4.91336 4.96680 5.01837 5.19833 5.27844 5.30607 5.31362 5.36472 5.38577 6.01606 6.26193 6.63187 7.10906 7.27975 8.43396 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.005946 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.335063 B = 4708.164431 C = 5058.795609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 C -0.142 4.142 4 C 0.508 3.492 5 O -0.581 6.581 6 N -0.698 5.698 7 C 0.241 3.759 8 H 0.040 0.960 9 C -0.652 4.652 10 H 0.086 0.914 11 C 0.008 3.992 12 N -0.874 5.874 13 Si 1.106 2.894 14 H -0.277 1.277 15 H -0.255 1.255 16 H -0.283 1.283 17 C 0.415 3.585 18 F -0.189 7.189 19 F -0.207 7.207 20 F -0.188 7.188 21 C -0.157 4.157 22 C -0.187 4.187 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.413 0.587 31 H 0.261 0.739 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 9.735 -12.555 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C -0.199 4.199 4 C 0.296 3.704 5 O -0.460 6.460 6 N -0.348 5.348 7 C 0.132 3.868 8 H 0.058 0.942 9 C -0.687 4.687 10 H 0.104 0.896 11 C -0.200 4.200 12 N -0.503 5.503 13 Si 0.926 3.074 14 H -0.203 1.203 15 H -0.179 1.179 16 H -0.209 1.209 17 C 0.359 3.641 18 F -0.171 7.171 19 F -0.189 7.189 20 F -0.169 7.169 21 C -0.176 4.176 22 C -0.224 4.224 23 C -0.182 4.182 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.251 0.749 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.566 8.840 -11.021 14.572 hybrid contribution 0.714 -0.189 -1.248 1.451 sum -2.852 8.651 -12.270 15.281 Atomic orbital electron populations 1.21845 0.90342 1.02550 1.04323 1.20264 0.98327 0.96335 0.89461 1.22022 1.01096 0.92269 1.04480 1.21567 0.79058 0.84125 0.85637 1.90648 1.39587 1.28469 1.87289 1.45822 1.52670 1.32153 1.04173 1.19270 0.86992 0.93630 0.86861 0.94227 1.21866 1.17573 1.32302 0.96926 0.89623 1.27311 0.93411 0.93493 1.05765 1.70848 1.36410 1.11507 1.31579 0.83129 0.77367 0.75419 0.71445 1.20328 1.17851 1.20854 1.23028 0.91945 0.75537 0.73589 1.93125 1.91212 1.83415 1.49331 1.93094 1.73652 1.92720 1.59427 1.93019 1.97029 1.31466 1.95401 1.21936 1.06258 0.98391 0.90979 1.23220 0.93240 1.02469 1.03467 1.23087 0.97018 1.03410 0.94703 0.91349 0.88227 0.93406 0.93065 0.88045 0.91315 0.74939 0.92928 0.90033 0.87378 0.89398 0.87859 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.21 71.98 0.59 -2.28 16 2 C -0.04 -1.10 0.72 -52.93 -0.04 -1.14 16 3 C -0.14 -3.05 6.97 71.98 0.50 -2.55 16 4 C 0.51 19.94 6.09 87.65 0.53 20.48 16 5 O -0.58 -28.20 14.22 -3.04 -0.04 -28.24 16 6 N -0.70 -28.14 4.73 -446.09 -2.11 -30.25 16 7 C 0.24 12.01 2.00 44.25 0.09 12.10 16 8 H 0.04 2.29 6.46 -2.39 -0.02 2.28 16 9 C -0.65 -33.14 8.32 25.60 0.21 -32.93 16 10 H 0.09 4.08 7.86 -2.91 -0.02 4.06 16 11 C 0.01 0.43 4.23 84.65 0.36 0.79 16 12 N -0.87 -50.38 12.35 21.45 0.26 -50.12 16 13 Si 1.11 46.20 29.99 68.60 2.06 48.26 16 14 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 15 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 C 0.42 21.00 2.82 71.98 0.20 21.20 16 18 F -0.19 -10.37 14.71 44.97 0.66 -9.71 16 19 F -0.21 -10.54 15.77 44.97 0.71 -9.83 16 20 F -0.19 -8.75 16.97 44.97 0.76 -7.99 16 21 C -0.16 -4.15 4.75 -10.79 -0.05 -4.20 16 22 C -0.19 -4.09 9.57 30.62 0.29 -3.80 16 23 C -0.15 -2.54 9.38 30.62 0.29 -2.25 16 24 H 0.07 1.40 7.57 -2.39 -0.02 1.38 16 25 H 0.10 1.48 7.29 -2.39 -0.02 1.46 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.25 6.97 -2.39 -0.02 1.24 16 28 H 0.10 1.49 7.07 -2.39 -0.02 1.47 16 29 H 0.07 1.41 7.56 -2.39 -0.02 1.39 16 30 H 0.41 14.09 7.36 -92.71 -0.68 13.41 16 31 H 0.26 15.65 7.25 -92.71 -0.67 14.97 16 32 H 0.08 2.69 7.47 -2.39 -0.02 2.67 16 33 H 0.11 2.15 5.85 -2.39 -0.01 2.14 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.12 1.51 7.07 -2.39 -0.02 1.49 16 Total: -1.00 -66.16 303.33 5.82 -60.34 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.53 Total: 22.12 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 2.98 Total: 5.42 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -1.84 Total: -80.37 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.04 Total: -28.24 kcal Atomic # 9 Polarization: -29.66 SS G_CDS: 2.13 Total: -27.53 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.06 Total: 48.26 kcal Total: -66.16 5.82 -60.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.467 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds