Wall clock time and date at job start Tue Mar 31 2020 01:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47367 * 2 1 4 4 C 1.50701 * 109.47276 * 119.99861 * 2 1 3 5 5 O 1.21278 * 120.00071 * 120.00115 * 4 2 1 6 6 N 1.34777 * 119.99788 * 299.99889 * 4 2 1 7 7 C 1.46500 * 119.99995 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.46596 * 35.00583 * 7 6 4 9 9 C 1.50696 * 109.47188 * 155.00083 * 7 6 4 10 10 H 1.08003 * 120.00087 * 0.02562 * 9 7 6 11 11 C 1.37880 * 120.00316 * 179.97438 * 9 7 6 12 12 N 1.31515 * 119.99571 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00268 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46848 * 60.00333 * 13 11 9 15 15 H 1.48500 * 109.47035 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47295 * 300.00839 * 13 11 9 17 17 C 1.52997 * 109.47473 * 275.00486 * 7 6 4 18 18 F 1.39905 * 109.47157 * 59.99740 * 17 7 6 19 19 F 1.39900 * 109.47010 * 300.00131 * 17 7 6 20 20 F 1.39897 * 109.47422 * 179.97438 * 17 7 6 21 21 C 1.52997 * 109.47477 * 239.99957 * 2 1 3 22 22 C 1.53783 * 113.61722 * 159.13361 * 21 2 1 23 23 C 1.53958 * 87.01812 * 220.04685 * 22 21 2 24 24 C 1.53782 * 87.11248 * 25.36404 * 23 22 21 25 25 H 1.08997 * 109.47149 * 299.99780 * 1 2 3 26 26 H 1.09004 * 109.47142 * 60.00251 * 1 2 3 27 27 H 1.08998 * 109.46853 * 180.02562 * 1 2 3 28 28 H 0.96995 * 120.00034 * 0.02562 * 6 4 2 29 29 H 0.97003 * 119.99476 * 179.97438 * 12 11 9 30 30 H 1.09008 * 112.84897 * 290.33560 * 21 2 1 31 31 H 1.08993 * 113.61628 * 334.56931 * 22 21 2 32 32 H 1.09003 * 113.61239 * 105.46926 * 22 21 2 33 33 H 1.08996 * 113.53874 * 270.80865 * 23 22 21 34 34 H 1.09007 * 113.73610 * 139.94435 * 23 22 21 35 35 H 1.08999 * 113.61366 * 220.08546 * 24 23 22 36 36 H 1.08999 * 113.60987 * 89.18442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7068 -0.2498 2.4546 7 6 2.1947 -0.9407 3.6508 8 1 3.1938 -1.3331 3.4615 9 6 2.2456 0.0275 4.8044 10 1 1.9442 1.0547 4.6610 11 6 2.6759 -0.3981 6.0433 12 7 3.0424 -1.6490 6.2180 13 14 2.7383 0.8019 7.4735 14 1 1.3769 1.3365 7.7308 15 1 3.2330 0.1016 8.6860 16 1 3.6550 1.9217 7.1404 17 6 1.2502 -2.0943 3.9944 18 9 1.2030 -2.9932 2.9234 19 9 -0.0321 -1.5906 4.2372 20 9 1.7165 -2.7544 5.1364 21 6 2.0401 -0.7212 -1.2492 22 6 3.4868 -0.3575 -1.6230 23 6 3.0233 -0.3620 -3.0912 24 6 1.6121 -0.0510 -2.5654 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.1488 0.5386 2.5435 29 1 3.3454 -1.9484 7.0894 30 1 1.8521 -1.7947 -1.2246 31 1 3.7963 0.6246 -1.2658 32 1 4.2081 -1.1407 -1.3895 33 1 3.1056 -1.3373 -3.5707 34 1 3.4533 0.4415 -3.6894 35 1 0.8222 -0.5869 -3.0917 36 1 1.4082 1.0152 -2.4664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:47 Heat of formation + Delta-G solvation = -188.361036 kcal Electronic energy + Delta-G solvation = -23355.542979 eV Core-core repulsion = 19424.755376 eV Total energy + Delta-G solvation = -3930.787602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.43364 -48.06908 -47.74486 -41.12774 -39.18117 -36.43888 -34.63078 -33.65950 -30.11164 -27.02416 -26.60244 -26.06366 -24.56642 -22.87925 -21.17246 -20.24047 -19.27889 -18.87394 -18.64892 -18.31429 -17.37881 -16.87849 -16.40921 -16.10859 -15.66522 -15.35709 -14.99192 -14.89533 -14.50612 -14.44312 -14.29897 -14.04542 -13.87601 -13.81440 -13.44498 -13.31657 -13.09944 -12.97046 -12.74109 -12.61721 -12.44523 -12.22958 -12.07269 -11.61233 -11.35262 -11.18452 -10.96220 -10.68343 -10.54871 -10.02046 -8.21836 -6.53169 1.46061 1.48357 1.57070 1.74030 2.24218 2.41317 2.54119 2.93348 3.60093 3.74462 3.78076 3.79498 3.86978 4.01668 4.07642 4.21668 4.35494 4.46786 4.54175 4.85318 4.90434 4.93459 4.96306 4.97921 5.09191 5.15121 5.21235 5.33799 5.44444 5.46243 5.56099 5.64731 5.69115 6.51804 6.77989 7.16764 7.42821 8.70720 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.005387 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.867665 B = 5196.834570 C = 5509.813448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.120 0.880 4 C 0.501 3.499 5 O -0.579 6.579 6 N -0.707 5.707 7 C 0.251 3.749 8 H 0.043 0.957 9 C -0.562 4.562 10 H 0.093 0.907 11 C 0.013 3.987 12 N -0.876 5.876 13 Si 0.984 3.016 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.262 1.262 17 C 0.414 3.586 18 F -0.220 7.220 19 F -0.203 7.203 20 F -0.152 7.152 21 C -0.097 4.097 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.118 4.118 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.042 0.958 28 H 0.412 0.588 29 H 0.268 0.732 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 7.367 -12.828 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.138 0.862 4 C 0.289 3.711 5 O -0.459 6.459 6 N -0.358 5.358 7 C 0.144 3.856 8 H 0.060 0.940 9 C -0.599 4.599 10 H 0.111 0.889 11 C -0.192 4.192 12 N -0.510 5.510 13 Si 0.807 3.193 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.186 1.186 17 C 0.357 3.643 18 F -0.202 7.202 19 F -0.184 7.184 20 F -0.133 7.133 21 C -0.116 4.116 22 C -0.180 4.180 23 C -0.172 4.172 24 C -0.155 4.155 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.061 0.939 28 H 0.249 0.751 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.067 6.492 -12.764 14.886 hybrid contribution -0.093 -0.221 1.306 1.328 sum -4.159 6.270 -11.458 13.707 Atomic orbital electron populations 1.21757 0.91370 1.02248 1.04202 1.21415 0.98600 1.00785 0.90337 0.86222 1.21686 0.79362 0.84328 0.85703 1.90655 1.39624 1.28239 1.87344 1.46006 1.53316 1.31775 1.04731 1.19262 0.91179 0.89285 0.85885 0.93972 1.21210 1.48357 0.96983 0.93305 0.88942 1.26035 0.93845 0.97199 1.02089 1.70538 1.39256 1.16127 1.25112 0.85203 0.79135 0.78182 0.76768 1.18950 1.21068 1.18626 1.23330 0.80967 0.85523 0.74440 1.93058 1.96736 1.72141 1.58304 1.92982 1.43184 1.87669 1.94603 1.93372 1.87265 1.82833 1.49846 1.22355 0.96947 0.99129 0.93189 1.22998 0.96166 1.01178 0.97684 1.22804 0.96957 1.02266 0.95154 1.22920 0.97003 1.01679 0.93885 0.91575 0.88269 0.93913 0.75116 0.92210 0.91400 0.89763 0.94008 0.90535 0.89879 0.90505 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.91 71.98 0.64 -2.35 16 2 C -0.09 -2.37 2.45 -11.54 -0.03 -2.40 16 3 H 0.12 2.54 7.98 -2.39 -0.02 2.52 16 4 C 0.50 19.51 6.66 87.66 0.58 20.09 16 5 O -0.58 -27.96 14.40 -3.02 -0.04 -28.00 16 6 N -0.71 -28.61 4.88 -446.11 -2.18 -30.79 16 7 C 0.25 12.77 2.21 44.24 0.10 12.87 16 8 H 0.04 2.50 7.58 -2.39 -0.02 2.48 16 9 C -0.56 -28.52 8.47 25.60 0.22 -28.30 16 10 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 11 C 0.01 0.70 5.20 84.66 0.44 1.14 16 12 N -0.88 -49.20 9.50 21.45 0.20 -49.00 16 13 Si 0.98 40.56 29.54 68.60 2.03 42.59 16 14 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 17 C 0.41 21.81 2.81 71.98 0.20 22.01 16 18 F -0.22 -11.65 15.68 44.97 0.71 -10.94 16 19 F -0.20 -10.02 16.94 44.97 0.76 -9.26 16 20 F -0.15 -8.73 12.91 44.97 0.58 -8.15 16 21 C -0.10 -2.49 2.51 -10.27 -0.03 -2.51 16 22 C -0.14 -3.58 7.54 31.18 0.24 -3.34 16 23 C -0.13 -2.47 8.09 31.18 0.25 -2.22 16 24 C -0.12 -2.01 6.75 31.12 0.21 -1.80 16 25 H 0.07 1.37 7.56 -2.39 -0.02 1.35 16 26 H 0.10 1.48 7.50 -2.38 -0.02 1.46 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.41 13.89 7.96 -92.71 -0.74 13.15 16 29 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.07 2.12 7.91 -2.38 -0.02 2.10 16 31 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.34 8.10 -2.39 -0.02 1.32 16 Total: -1.00 -65.84 306.08 5.25 -60.60 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.36 Total: 19.76 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 2.83 Total: 13.19 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.97 Total: -79.79 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 9 Polarization: -30.40 SS G_CDS: 2.05 Total: -28.35 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -65.84 5.25 -60.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.764 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds