Wall clock time and date at job start Tue Mar 31 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 O 1.21278 * 119.99818 * 240.00149 * 4 2 1 6 6 N 1.34777 * 119.99991 * 60.00288 * 4 2 1 7 7 C 1.46499 * 119.99824 * 180.02562 * 6 4 2 8 8 H 1.08999 * 109.47270 * 34.99862 * 7 6 4 9 9 C 1.50699 * 109.47293 * 154.99940 * 7 6 4 10 10 H 1.08002 * 119.99631 * 359.97438 * 9 7 6 11 11 C 1.37874 * 120.00121 * 179.97438 * 9 7 6 12 12 N 1.31510 * 120.00351 * 359.97438 * 11 9 7 13 13 Si 1.86809 * 119.99728 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47048 * 90.00005 * 13 11 9 15 15 H 1.48507 * 109.46745 * 209.99669 * 13 11 9 16 16 H 1.48495 * 109.47165 * 329.99521 * 13 11 9 17 17 C 1.52997 * 109.47086 * 274.99727 * 7 6 4 18 18 F 1.39900 * 109.46931 * 60.00086 * 17 7 6 19 19 F 1.39895 * 109.47456 * 180.02562 * 17 7 6 20 20 F 1.39903 * 109.47292 * 300.00122 * 17 7 6 21 21 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 22 22 C 1.53785 * 113.61112 * 277.49499 * 21 2 1 23 23 C 1.53779 * 87.07854 * 220.01691 * 22 21 2 24 24 C 1.53777 * 87.08356 * 25.43282 * 23 22 21 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00094 * 359.97438 * 6 4 2 29 29 H 0.96999 * 120.00586 * 179.97438 * 12 11 9 30 30 H 1.09004 * 112.84805 * 48.79478 * 21 2 1 31 31 H 1.09001 * 113.61651 * 334.56696 * 22 21 2 32 32 H 1.09001 * 113.60934 * 105.46822 * 22 21 2 33 33 H 1.09005 * 113.61342 * 270.88516 * 23 22 21 34 34 H 1.09000 * 113.68803 * 139.99370 * 23 22 21 35 35 H 1.08995 * 113.61914 * 220.02103 * 24 23 22 36 36 H 1.09003 * 113.68973 * 89.12299 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 1 2.2308 -2.0137 -3.4613 9 6 1.2647 -0.6657 -4.8043 10 1 0.3968 -0.0391 -4.6606 11 6 1.5218 -1.2138 -6.0430 12 7 2.5788 -1.9764 -6.2181 13 14 0.3695 -0.8720 -7.4730 14 1 0.8218 0.3453 -8.1931 15 1 0.3782 -2.0295 -8.4033 16 1 -1.0076 -0.6603 -6.9593 17 6 3.5973 -0.4362 -3.9948 18 9 4.4605 -0.6917 -2.9240 19 9 4.0629 -1.0955 -5.1374 20 9 3.5508 0.9408 -4.2381 21 6 2.0400 -0.7213 1.2492 22 6 2.0721 0.1676 2.5038 23 6 3.4107 -0.5053 2.8502 24 6 3.5738 -0.7769 1.3455 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.1488 0.5385 -2.5436 29 1 2.7596 -2.3624 -7.0894 30 1 1.5572 -1.6856 1.4079 31 1 2.1622 1.2312 2.2831 32 1 1.2759 -0.0523 3.2150 33 1 3.3027 -1.4103 3.4481 34 1 4.1549 0.1818 3.2531 35 1 3.9899 -1.7591 1.1216 36 1 4.0745 0.0278 0.8069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:50 Heat of formation + Delta-G solvation = -169.639525 kcal Electronic energy + Delta-G solvation = -23432.187503 eV Core-core repulsion = 19502.211726 eV Total energy + Delta-G solvation = -3929.975777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.33349 -45.98916 -45.59820 -39.80531 -37.83180 -34.57854 -33.06795 -32.19924 -28.25406 -25.85561 -25.22367 -24.57204 -23.10914 -21.12055 -19.57031 -19.26312 -17.47634 -16.84385 -16.63788 -16.38473 -15.74685 -15.32312 -14.91555 -14.77788 -14.45250 -13.60426 -13.24312 -12.90609 -12.66314 -12.48858 -12.41766 -12.39050 -12.28627 -12.23824 -12.04308 -11.94395 -11.80524 -11.48292 -11.15227 -11.09105 -10.89304 -10.72365 -10.42848 -10.37210 -10.18288 -9.93180 -9.64069 -8.94659 -8.72264 -8.20732 -6.23317 -4.47337 3.18222 3.24325 3.26928 3.31506 3.85084 4.21140 4.57704 4.72963 4.76996 4.82620 4.93482 5.05945 5.24192 5.31888 5.49660 5.58297 5.77357 5.82514 5.87302 5.89145 5.90167 5.94157 5.97509 6.10475 6.21368 6.27085 6.41246 6.46923 6.67691 6.97211 7.23034 7.48752 7.63739 8.38632 8.50905 8.96782 9.20925 10.68190 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.005652 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.227646 B = 4952.821389 C = 5529.879283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.509 3.491 5 O -0.532 6.532 6 N -0.714 5.714 7 C 0.245 3.755 8 H 0.084 0.916 9 C -0.551 4.551 10 H 0.077 0.923 11 C 0.065 3.935 12 N -0.840 5.840 13 Si 0.914 3.086 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.417 3.583 18 F -0.218 7.218 19 F -0.137 7.137 20 F -0.210 7.210 21 C -0.086 4.086 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.122 4.122 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.397 0.603 29 H 0.268 0.732 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 4.875 11.603 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.109 0.891 4 C 0.294 3.706 5 O -0.408 6.408 6 N -0.363 5.363 7 C 0.139 3.861 8 H 0.101 0.899 9 C -0.588 4.588 10 H 0.095 0.905 11 C -0.144 4.144 12 N -0.473 5.473 13 Si 0.741 3.259 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.195 1.195 17 C 0.360 3.640 18 F -0.200 7.200 19 F -0.119 7.119 20 F -0.192 7.192 21 C -0.105 4.105 22 C -0.173 4.173 23 C -0.184 4.184 24 C -0.159 4.159 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.230 0.770 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.085 4.024 11.513 12.373 hybrid contribution -0.456 0.714 -1.013 1.320 sum -2.541 4.738 10.500 11.796 Atomic orbital electron populations 1.21728 0.93230 1.02678 1.02204 1.21363 0.97263 1.00330 0.93464 0.89062 1.20563 0.80409 0.84997 0.84644 1.90675 1.37332 1.26152 1.86677 1.46107 1.52742 1.31908 1.05553 1.19681 0.86911 0.95474 0.84016 0.89865 1.20881 1.10542 1.34275 0.93145 0.90536 1.25087 0.95396 0.94685 0.99252 1.70401 1.23546 1.28921 1.24462 0.86225 0.80552 0.78080 0.81051 1.20231 1.20807 1.19494 1.23161 0.91131 0.74740 0.74928 1.93066 1.74656 1.93970 1.58273 1.93401 1.90123 1.79402 1.48928 1.92984 1.97069 1.34525 1.94648 1.22305 0.97108 0.98720 0.92327 1.22977 0.97658 0.99172 0.97493 1.22862 0.97507 1.00474 0.97603 1.22778 0.95878 1.02767 0.94505 0.91936 0.91993 0.92120 0.76951 0.92149 0.89051 0.90301 0.91817 0.90543 0.91906 0.90836 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.08 37.16 0.34 -1.31 16 2 C -0.10 -1.44 2.48 -91.77 -0.23 -1.67 16 3 H 0.09 1.16 7.94 -51.93 -0.41 0.75 16 4 C 0.51 9.77 6.49 -10.98 -0.07 9.70 16 5 O -0.53 -12.13 13.42 5.56 0.07 -12.06 16 6 N -0.71 -14.43 4.88 -54.93 -0.27 -14.70 16 7 C 0.24 6.08 2.21 -69.08 -0.15 5.93 16 8 H 0.08 2.32 7.58 -51.93 -0.39 1.93 16 9 C -0.55 -14.03 8.46 -34.44 -0.29 -14.33 16 10 H 0.08 1.84 7.74 -52.49 -0.41 1.43 16 11 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 12 N -0.84 -23.12 9.50 55.43 0.53 -22.59 16 13 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 C 0.42 10.74 2.81 37.16 0.10 10.85 16 18 F -0.22 -5.56 15.68 2.25 0.04 -5.52 16 19 F -0.14 -3.83 12.91 2.25 0.03 -3.81 16 20 F -0.21 -5.22 16.94 2.25 0.04 -5.18 16 21 C -0.09 -1.14 2.72 -89.81 -0.24 -1.39 16 22 C -0.14 -1.43 7.63 -25.92 -0.20 -1.62 16 23 C -0.15 -1.63 8.08 -25.92 -0.21 -1.84 16 24 C -0.12 -1.74 6.19 -25.92 -0.16 -1.90 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.40 6.96 7.96 -40.82 -0.32 6.64 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.19 7.96 -51.93 -0.41 0.77 16 36 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -29.33 305.51 -6.04 -35.37 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.85 Total: 4.85 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.21 Total: 4.00 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.26 Total: -37.29 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 9 Polarization: -14.62 SS G_CDS: 0.10 Total: -14.51 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.33 -6.04 -35.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.269 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds