Wall clock time and date at job start Tue Mar 31 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 O 1.21278 * 119.99818 * 240.00149 * 4 2 1 6 6 N 1.34777 * 119.99991 * 60.00288 * 4 2 1 7 7 C 1.46499 * 119.99824 * 180.02562 * 6 4 2 8 8 H 1.08999 * 109.47270 * 34.99862 * 7 6 4 9 9 C 1.50699 * 109.47293 * 154.99940 * 7 6 4 10 10 H 1.08002 * 119.99631 * 359.97438 * 9 7 6 11 11 C 1.37874 * 120.00121 * 179.97438 * 9 7 6 12 12 N 1.31510 * 120.00351 * 359.97438 * 11 9 7 13 13 Si 1.86809 * 119.99728 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47048 * 90.00005 * 13 11 9 15 15 H 1.48507 * 109.46745 * 209.99669 * 13 11 9 16 16 H 1.48495 * 109.47165 * 329.99521 * 13 11 9 17 17 C 1.52997 * 109.47086 * 274.99727 * 7 6 4 18 18 F 1.39900 * 109.46931 * 60.00086 * 17 7 6 19 19 F 1.39895 * 109.47456 * 180.02562 * 17 7 6 20 20 F 1.39903 * 109.47292 * 300.00122 * 17 7 6 21 21 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 22 22 C 1.53785 * 113.61112 * 277.49499 * 21 2 1 23 23 C 1.53779 * 87.07854 * 220.01691 * 22 21 2 24 24 C 1.53777 * 87.08356 * 25.43282 * 23 22 21 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00094 * 359.97438 * 6 4 2 29 29 H 0.96999 * 120.00586 * 179.97438 * 12 11 9 30 30 H 1.09004 * 112.84805 * 48.79478 * 21 2 1 31 31 H 1.09001 * 113.61651 * 334.56696 * 22 21 2 32 32 H 1.09001 * 113.60934 * 105.46822 * 22 21 2 33 33 H 1.09005 * 113.61342 * 270.88516 * 23 22 21 34 34 H 1.09000 * 113.68803 * 139.99370 * 23 22 21 35 35 H 1.08995 * 113.61914 * 220.02103 * 24 23 22 36 36 H 1.09003 * 113.68973 * 89.12299 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 1 2.2308 -2.0137 -3.4613 9 6 1.2647 -0.6657 -4.8043 10 1 0.3968 -0.0391 -4.6606 11 6 1.5218 -1.2138 -6.0430 12 7 2.5788 -1.9764 -6.2181 13 14 0.3695 -0.8720 -7.4730 14 1 0.8218 0.3453 -8.1931 15 1 0.3782 -2.0295 -8.4033 16 1 -1.0076 -0.6603 -6.9593 17 6 3.5973 -0.4362 -3.9948 18 9 4.4605 -0.6917 -2.9240 19 9 4.0629 -1.0955 -5.1374 20 9 3.5508 0.9408 -4.2381 21 6 2.0400 -0.7213 1.2492 22 6 2.0721 0.1676 2.5038 23 6 3.4107 -0.5053 2.8502 24 6 3.5738 -0.7769 1.3455 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.1488 0.5385 -2.5436 29 1 2.7596 -2.3624 -7.0894 30 1 1.5572 -1.6856 1.4079 31 1 2.1622 1.2312 2.2831 32 1 1.2759 -0.0523 3.2150 33 1 3.3027 -1.4103 3.4481 34 1 4.1549 0.1818 3.2531 35 1 3.9899 -1.7591 1.1216 36 1 4.0745 0.0278 0.8069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:50 Heat of formation + Delta-G solvation = -187.150603 kcal Electronic energy + Delta-G solvation = -23432.946840 eV Core-core repulsion = 19502.211726 eV Total energy + Delta-G solvation = -3930.735114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.43017 -48.06631 -47.74096 -41.15281 -39.11129 -36.41359 -34.63693 -33.69060 -30.10349 -26.84861 -26.60609 -26.18124 -24.57531 -22.84623 -21.12771 -20.30028 -19.27904 -18.87294 -18.67086 -18.19372 -17.40392 -16.90494 -16.45013 -16.00319 -15.85150 -15.15591 -14.98994 -14.88651 -14.52430 -14.46472 -14.30539 -14.05185 -13.92532 -13.61923 -13.47359 -13.25012 -13.04308 -12.97193 -12.74787 -12.65257 -12.50434 -12.20540 -12.09919 -11.57544 -11.37794 -11.24605 -10.92338 -10.69697 -10.45879 -10.00000 -8.21695 -6.52806 1.46066 1.46808 1.58381 1.76489 2.24282 2.41010 2.55039 2.93587 3.59321 3.75552 3.78931 3.80191 3.87286 4.03409 4.11961 4.20535 4.36009 4.47205 4.51559 4.87275 4.90967 4.93618 4.97099 5.00217 5.10330 5.15418 5.25353 5.35337 5.45919 5.46557 5.56552 5.65316 5.67948 6.52482 6.79560 7.17197 7.44686 8.70972 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.005652 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.227646 B = 4952.821389 C = 5529.879283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.113 0.887 4 C 0.501 3.499 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.252 3.748 8 H 0.043 0.957 9 C -0.560 4.560 10 H 0.092 0.908 11 C 0.013 3.987 12 N -0.877 5.877 13 Si 0.983 3.017 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.255 1.255 17 C 0.413 3.587 18 F -0.220 7.220 19 F -0.152 7.152 20 F -0.204 7.204 21 C -0.092 4.092 22 C -0.116 4.116 23 C -0.137 4.137 24 C -0.137 4.137 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.412 0.588 29 H 0.268 0.732 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 6.838 12.763 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.130 0.870 4 C 0.289 3.711 5 O -0.453 6.453 6 N -0.359 5.359 7 C 0.145 3.855 8 H 0.061 0.939 9 C -0.597 4.597 10 H 0.110 0.890 11 C -0.192 4.192 12 N -0.511 5.511 13 Si 0.807 3.193 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.179 1.179 17 C 0.357 3.643 18 F -0.202 7.202 19 F -0.133 7.133 20 F -0.185 7.185 21 C -0.111 4.111 22 C -0.153 4.153 23 C -0.174 4.174 24 C -0.175 4.175 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.248 0.752 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.086 6.018 12.703 14.639 hybrid contribution 0.237 0.063 -1.348 1.370 sum -3.849 6.082 11.355 13.444 Atomic orbital electron populations 1.21742 0.90934 1.02571 1.04121 1.21428 0.98981 1.00454 0.90499 0.86957 1.21657 0.79321 0.84554 0.85603 1.90660 1.39148 1.28231 1.87263 1.46011 1.52965 1.32212 1.04753 1.19256 0.86652 0.93753 0.85884 0.93928 1.21239 1.10908 1.34241 0.93298 0.88956 1.26027 0.96790 0.94276 1.02084 1.70539 1.25437 1.30073 1.25019 0.85156 0.79013 0.77676 0.77466 1.19976 1.20886 1.17898 1.23351 0.91565 0.74934 0.74469 1.93059 1.74822 1.94026 1.58260 1.93372 1.90358 1.79794 1.49791 1.92981 1.97061 1.33892 1.94607 1.22374 0.95872 0.99262 0.93614 1.22910 0.97605 0.99189 0.95602 1.22838 0.98453 1.01215 0.94939 1.22807 0.96729 1.00509 0.97443 0.88620 0.91476 0.93266 0.75193 0.92236 0.90043 0.88826 0.89623 0.89851 0.90605 0.94114 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.08 71.98 0.65 -2.14 16 2 C -0.09 -2.42 2.48 -11.54 -0.03 -2.45 16 3 H 0.11 2.52 7.94 -2.39 -0.02 2.50 16 4 C 0.50 19.32 6.49 87.66 0.57 19.89 16 5 O -0.57 -27.24 13.42 -3.02 -0.04 -27.28 16 6 N -0.71 -28.55 4.88 -446.11 -2.18 -30.73 16 7 C 0.25 12.76 2.21 44.24 0.10 12.86 16 8 H 0.04 2.51 7.58 -2.39 -0.02 2.49 16 9 C -0.56 -28.37 8.46 25.60 0.22 -28.16 16 10 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 11 C 0.01 0.69 5.20 84.65 0.44 1.13 16 12 N -0.88 -49.18 9.50 21.45 0.20 -48.98 16 13 Si 0.98 40.59 29.54 68.60 2.03 42.61 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 17 C 0.41 21.74 2.81 71.98 0.20 21.94 16 18 F -0.22 -11.55 15.68 44.97 0.70 -10.85 16 19 F -0.15 -8.73 12.91 44.97 0.58 -8.15 16 20 F -0.20 -10.08 16.94 44.97 0.76 -9.32 16 21 C -0.09 -2.33 2.72 -10.27 -0.03 -2.36 16 22 C -0.12 -2.02 7.63 31.12 0.24 -1.78 16 23 C -0.14 -2.75 8.08 31.12 0.25 -2.50 16 24 C -0.14 -3.94 6.19 31.12 0.19 -3.75 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.31 7.56 -2.39 -0.02 1.30 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.41 13.87 7.96 -92.71 -0.74 13.13 16 29 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 1.41 7.96 -2.39 -0.02 1.39 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 1.39 7.96 -2.39 -0.02 1.37 16 36 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 Total: -1.00 -65.25 305.51 5.23 -60.02 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.36 Total: 19.98 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 2.80 Total: 12.68 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.97 Total: -79.70 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.28 kcal Atomic # 9 Polarization: -30.36 SS G_CDS: 2.05 Total: -28.32 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -65.25 5.23 -60.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.126 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds