Wall clock time and date at job start Tue Mar 31 2020 01:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 O 1.21283 * 120.00363 * 239.99943 * 4 2 1 6 6 N 1.34784 * 119.99988 * 60.00061 * 4 2 1 7 7 C 1.46493 * 119.99864 * 179.72721 * 6 4 2 8 8 H 1.09003 * 109.47333 * 324.99821 * 7 6 4 9 9 C 1.50700 * 109.46896 * 204.99839 * 7 6 4 10 10 H 1.07997 * 120.00272 * 0.02562 * 9 7 6 11 11 C 1.37881 * 119.99885 * 179.97438 * 9 7 6 12 12 N 1.31509 * 120.00345 * 359.97438 * 11 9 7 13 13 Si 1.86807 * 119.99885 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46901 * 89.99840 * 13 11 9 15 15 H 1.48490 * 109.47213 * 210.00019 * 13 11 9 16 16 H 1.48502 * 109.46894 * 330.00124 * 13 11 9 17 17 C 1.52999 * 109.47638 * 84.99998 * 7 6 4 18 18 F 1.39901 * 109.47020 * 59.99235 * 17 7 6 19 19 F 1.39894 * 109.47430 * 179.97438 * 17 7 6 20 20 F 1.39907 * 109.47025 * 299.99833 * 17 7 6 21 21 C 1.53001 * 109.46989 * 119.99703 * 2 1 3 22 22 C 1.53781 * 113.61404 * 277.49447 * 21 2 1 23 23 C 1.53784 * 87.07966 * 220.01975 * 22 21 2 24 24 C 1.53773 * 87.08155 * 25.43499 * 23 22 21 25 25 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 26 26 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 28 28 H 0.97000 * 119.99339 * 0.02562 * 6 4 2 29 29 H 0.96995 * 120.00482 * 179.97438 * 12 11 9 30 30 H 1.09001 * 112.84832 * 48.80540 * 21 2 1 31 31 H 1.08991 * 113.61899 * 334.57189 * 22 21 2 32 32 H 1.09002 * 113.61230 * 105.47372 * 22 21 2 33 33 H 1.08998 * 113.61188 * 270.88333 * 23 22 21 34 34 H 1.08997 * 113.68768 * 139.99715 * 23 22 21 35 35 H 1.09003 * 113.61834 * 220.01757 * 24 23 22 36 36 H 1.09003 * 113.69488 * 89.12420 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.2000 -0.9372 -3.6506 8 1 3.2006 -1.3252 -3.4601 9 6 2.2483 0.0327 -4.8031 10 1 1.9427 1.0584 -4.6589 11 6 2.6839 -0.3893 -6.0414 12 7 3.0576 -1.6379 -6.2167 13 14 2.7445 0.8131 -7.4697 14 1 4.0734 1.4751 -7.5034 15 1 2.5237 0.0811 -8.7427 16 1 1.6846 1.8391 -7.2984 17 6 1.2616 -2.0948 -3.9974 18 9 -0.0227 -1.5968 -4.2419 19 9 1.7324 -2.7506 -5.1399 20 9 1.2167 -2.9952 -2.9275 21 6 2.0400 -0.7212 1.2493 22 6 2.0720 0.1677 2.5038 23 6 3.4107 -0.5052 2.8503 24 6 3.5738 -0.7768 1.3455 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1494 0.5389 -2.5435 29 1 3.3636 -1.9349 -7.0879 30 1 1.5573 -1.6855 1.4080 31 1 2.1621 1.2312 2.2832 32 1 1.2759 -0.0521 3.2151 33 1 3.3027 -1.4101 3.4482 34 1 4.1548 0.1819 3.2531 35 1 3.9900 -1.7590 1.1216 36 1 4.0745 0.0278 0.8069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:53 Heat of formation + Delta-G solvation = -169.733121 kcal Electronic energy + Delta-G solvation = -23417.154259 eV Core-core repulsion = 19487.174424 eV Total energy + Delta-G solvation = -3929.979835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.33070 -45.98524 -45.59790 -39.80854 -37.83543 -34.57810 -33.06990 -32.19710 -28.25482 -25.86224 -25.23255 -24.57679 -23.09926 -21.13319 -19.57004 -19.26901 -17.45610 -16.83903 -16.60294 -16.49427 -15.70388 -15.30734 -14.96931 -14.76908 -14.24050 -13.91833 -13.13247 -12.91822 -12.60425 -12.56507 -12.39095 -12.34157 -12.26499 -12.25124 -12.03665 -11.96309 -11.81030 -11.51782 -11.18228 -11.06856 -10.85108 -10.75608 -10.43551 -10.37221 -10.18313 -9.94289 -9.65147 -8.94925 -8.71745 -8.20676 -6.23654 -4.47457 3.17726 3.24313 3.27277 3.31123 3.85545 4.21220 4.57726 4.72163 4.76348 4.82031 4.93496 5.04964 5.23935 5.31586 5.49715 5.58710 5.77231 5.83059 5.86264 5.88818 5.89747 5.93060 5.96693 6.10544 6.22692 6.26468 6.39790 6.45085 6.66679 6.97189 7.23106 7.48600 7.63628 8.38654 8.50832 8.96795 9.20825 10.68098 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.025635 B = 0.005501 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.975203 B = 5088.813500 C = 5376.075665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.092 0.908 4 C 0.508 3.492 5 O -0.532 6.532 6 N -0.714 5.714 7 C 0.245 3.755 8 H 0.084 0.916 9 C -0.552 4.552 10 H 0.077 0.923 11 C 0.065 3.935 12 N -0.840 5.840 13 Si 0.914 3.086 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.271 1.271 17 C 0.417 3.583 18 F -0.210 7.210 19 F -0.138 7.138 20 F -0.218 7.218 21 C -0.086 4.086 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.122 4.122 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.397 0.603 29 H 0.268 0.732 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 4.573 11.606 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.110 0.890 4 C 0.294 3.706 5 O -0.408 6.408 6 N -0.363 5.363 7 C 0.139 3.861 8 H 0.101 0.899 9 C -0.589 4.589 10 H 0.095 0.905 11 C -0.144 4.144 12 N -0.473 5.473 13 Si 0.741 3.259 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.195 1.195 17 C 0.361 3.639 18 F -0.192 7.192 19 F -0.119 7.119 20 F -0.200 7.200 21 C -0.105 4.105 22 C -0.173 4.173 23 C -0.184 4.184 24 C -0.160 4.160 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.231 0.769 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.594 3.668 11.514 12.360 hybrid contribution -0.499 0.676 -1.008 1.312 sum -3.093 4.344 10.507 11.782 Atomic orbital electron populations 1.21733 0.93314 1.02697 1.02186 1.21354 0.97228 1.00323 0.93449 0.88961 1.20569 0.80566 0.84849 0.84649 1.90676 1.37576 1.25897 1.86682 1.46109 1.53037 1.31620 1.05550 1.19677 0.93101 0.89304 0.84009 0.89881 1.20884 1.48360 0.96423 0.93235 0.90539 1.25088 0.94467 0.95615 0.99246 1.70396 1.38138 1.14251 1.24534 0.86224 0.78653 0.80384 0.80641 1.20206 1.20799 1.19526 1.23144 0.80406 0.85427 0.74930 1.92983 1.43560 1.88022 1.94626 1.93399 1.86851 1.82673 1.48966 1.93068 1.96692 1.71864 1.58343 1.22306 0.97075 0.98763 0.92337 1.22978 0.97661 0.99166 0.97507 1.22857 0.97512 1.00486 0.97568 1.22784 0.95914 1.02696 0.94576 0.92057 0.92160 0.91871 0.76944 0.92138 0.89057 0.90277 0.91827 0.90545 0.91894 0.90838 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.08 37.16 0.34 -1.39 16 2 C -0.10 -1.43 2.48 -91.77 -0.23 -1.66 16 3 H 0.09 1.14 7.94 -51.93 -0.41 0.72 16 4 C 0.51 9.77 6.50 -10.98 -0.07 9.70 16 5 O -0.53 -12.14 13.41 5.56 0.07 -12.06 16 6 N -0.71 -14.44 4.88 -54.94 -0.27 -14.71 16 7 C 0.24 6.08 2.21 -69.09 -0.15 5.93 16 8 H 0.08 2.32 7.58 -51.93 -0.39 1.92 16 9 C -0.55 -14.07 8.46 -34.44 -0.29 -14.36 16 10 H 0.08 1.84 7.73 -52.49 -0.41 1.43 16 11 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 12 N -0.84 -23.13 9.51 55.43 0.53 -22.60 16 13 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 C 0.42 10.76 2.81 37.16 0.10 10.86 16 18 F -0.21 -5.20 16.94 2.25 0.04 -5.17 16 19 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 20 F -0.22 -5.58 15.67 2.25 0.04 -5.54 16 21 C -0.09 -1.15 2.72 -89.81 -0.24 -1.39 16 22 C -0.14 -1.41 7.63 -25.92 -0.20 -1.61 16 23 C -0.15 -1.59 8.08 -25.92 -0.21 -1.80 16 24 C -0.12 -1.70 6.19 -25.92 -0.16 -1.86 16 25 H 0.06 0.73 7.56 -51.93 -0.39 0.33 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.40 6.97 7.95 -40.82 -0.32 6.65 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.16 7.96 -51.93 -0.41 0.74 16 36 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -29.37 305.50 -6.04 -35.41 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.85 Total: 4.82 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.21 Total: 4.01 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.26 Total: -37.31 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 9 Polarization: -14.63 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.37 -6.04 -35.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.326 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds