Wall clock time and date at job start Tue Mar 31 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 O 1.21283 * 120.00363 * 239.99943 * 4 2 1 6 6 N 1.34784 * 119.99988 * 60.00061 * 4 2 1 7 7 C 1.46493 * 119.99864 * 179.72721 * 6 4 2 8 8 H 1.09003 * 109.47333 * 324.99821 * 7 6 4 9 9 C 1.50700 * 109.46896 * 204.99839 * 7 6 4 10 10 H 1.07997 * 120.00272 * 0.02562 * 9 7 6 11 11 C 1.37881 * 119.99885 * 179.97438 * 9 7 6 12 12 N 1.31509 * 120.00345 * 359.97438 * 11 9 7 13 13 Si 1.86807 * 119.99885 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46901 * 89.99840 * 13 11 9 15 15 H 1.48490 * 109.47213 * 210.00019 * 13 11 9 16 16 H 1.48502 * 109.46894 * 330.00124 * 13 11 9 17 17 C 1.52999 * 109.47638 * 84.99998 * 7 6 4 18 18 F 1.39901 * 109.47020 * 59.99235 * 17 7 6 19 19 F 1.39894 * 109.47430 * 179.97438 * 17 7 6 20 20 F 1.39907 * 109.47025 * 299.99833 * 17 7 6 21 21 C 1.53001 * 109.46989 * 119.99703 * 2 1 3 22 22 C 1.53781 * 113.61404 * 277.49447 * 21 2 1 23 23 C 1.53784 * 87.07966 * 220.01975 * 22 21 2 24 24 C 1.53773 * 87.08155 * 25.43499 * 23 22 21 25 25 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 26 26 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 28 28 H 0.97000 * 119.99339 * 0.02562 * 6 4 2 29 29 H 0.96995 * 120.00482 * 179.97438 * 12 11 9 30 30 H 1.09001 * 112.84832 * 48.80540 * 21 2 1 31 31 H 1.08991 * 113.61899 * 334.57189 * 22 21 2 32 32 H 1.09002 * 113.61230 * 105.47372 * 22 21 2 33 33 H 1.08998 * 113.61188 * 270.88333 * 23 22 21 34 34 H 1.08997 * 113.68768 * 139.99715 * 23 22 21 35 35 H 1.09003 * 113.61834 * 220.01757 * 24 23 22 36 36 H 1.09003 * 113.69488 * 89.12420 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.2000 -0.9372 -3.6506 8 1 3.2006 -1.3252 -3.4601 9 6 2.2483 0.0327 -4.8031 10 1 1.9427 1.0584 -4.6589 11 6 2.6839 -0.3893 -6.0414 12 7 3.0576 -1.6379 -6.2167 13 14 2.7445 0.8131 -7.4697 14 1 4.0734 1.4751 -7.5034 15 1 2.5237 0.0811 -8.7427 16 1 1.6846 1.8391 -7.2984 17 6 1.2616 -2.0948 -3.9974 18 9 -0.0227 -1.5968 -4.2419 19 9 1.7324 -2.7506 -5.1399 20 9 1.2167 -2.9952 -2.9275 21 6 2.0400 -0.7212 1.2493 22 6 2.0720 0.1677 2.5038 23 6 3.4107 -0.5052 2.8503 24 6 3.5738 -0.7768 1.3455 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1494 0.5389 -2.5435 29 1 3.3636 -1.9349 -7.0879 30 1 1.5573 -1.6855 1.4080 31 1 2.1621 1.2312 2.2832 32 1 1.2759 -0.0521 3.2151 33 1 3.3027 -1.4101 3.4482 34 1 4.1548 0.1819 3.2531 35 1 3.9900 -1.7590 1.1216 36 1 4.0745 0.0278 0.8069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:52 Heat of formation + Delta-G solvation = -187.276156 kcal Electronic energy + Delta-G solvation = -23417.914982 eV Core-core repulsion = 19487.174424 eV Total energy + Delta-G solvation = -3930.740559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.42728 -48.06211 -47.74069 -41.15158 -39.10616 -36.41344 -34.64160 -33.69433 -30.10588 -26.86597 -26.59593 -26.18351 -24.56562 -22.85767 -21.12520 -20.29564 -19.25960 -18.86532 -18.64275 -18.29392 -17.37054 -16.86846 -16.42124 -16.10897 -15.64234 -15.36940 -14.98407 -14.89424 -14.50144 -14.44283 -14.29497 -14.04138 -13.87547 -13.65572 -13.46761 -13.23506 -13.10532 -13.00190 -12.72119 -12.63839 -12.49213 -12.22260 -12.10446 -11.59153 -11.37139 -11.23852 -10.92169 -10.68893 -10.46430 -9.99794 -8.22112 -6.53100 1.45687 1.46802 1.58419 1.76164 2.24647 2.41486 2.54800 2.93481 3.59496 3.75074 3.79184 3.80422 3.87576 4.03838 4.11486 4.22812 4.35723 4.47177 4.49384 4.85927 4.91340 4.94283 4.97397 4.98377 5.09441 5.15973 5.25270 5.33416 5.45711 5.46943 5.56593 5.65259 5.68388 6.52228 6.79617 7.16976 7.44741 8.70772 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.025635 B = 0.005501 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.975203 B = 5088.813500 C = 5376.075665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.119 0.881 4 C 0.500 3.500 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.252 3.748 8 H 0.043 0.957 9 C -0.561 4.561 10 H 0.092 0.908 11 C 0.013 3.987 12 N -0.876 5.876 13 Si 0.983 3.017 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.257 1.257 17 C 0.414 3.586 18 F -0.203 7.203 19 F -0.152 7.152 20 F -0.220 7.220 21 C -0.094 4.094 22 C -0.116 4.116 23 C -0.137 4.137 24 C -0.136 4.136 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.412 0.588 29 H 0.268 0.732 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 7.170 12.729 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.137 0.863 4 C 0.288 3.712 5 O -0.453 6.453 6 N -0.359 5.359 7 C 0.144 3.856 8 H 0.061 0.939 9 C -0.598 4.598 10 H 0.110 0.890 11 C -0.192 4.192 12 N -0.511 5.511 13 Si 0.807 3.193 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.181 1.181 17 C 0.358 3.642 18 F -0.185 7.185 19 F -0.134 7.134 20 F -0.202 7.202 21 C -0.113 4.113 22 C -0.153 4.153 23 C -0.175 4.175 24 C -0.174 4.174 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.248 0.752 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.761 6.296 12.669 14.638 hybrid contribution -0.118 -0.208 -1.330 1.352 sum -3.879 6.088 11.338 13.441 Atomic orbital electron populations 1.21752 0.91438 1.02226 1.04141 1.21421 0.98579 1.00769 0.90462 0.86301 1.21667 0.79448 0.84433 0.85608 1.90662 1.39372 1.28008 1.87267 1.46013 1.53294 1.31889 1.04748 1.19253 0.91197 0.89243 0.85874 0.93942 1.21242 1.48060 0.97081 0.93401 0.88973 1.26028 0.93873 0.97190 1.02075 1.70534 1.39170 1.16266 1.25086 0.85157 0.79119 0.78206 0.76845 1.19530 1.21083 1.18105 1.23326 0.80853 0.85603 0.74458 1.92981 1.43031 1.87878 1.94581 1.93369 1.87120 1.83038 1.49832 1.93059 1.96732 1.72059 1.58349 1.22369 0.96162 0.99099 0.93691 1.22915 0.97598 0.99303 0.95489 1.22829 0.98440 1.01151 0.95037 1.22819 0.96451 1.00679 0.97410 0.91618 0.93860 0.88404 0.75187 0.92222 0.90573 0.88545 0.89897 0.90108 0.90393 0.94126 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.08 71.98 0.65 -2.33 16 2 C -0.09 -2.38 2.48 -11.54 -0.03 -2.41 16 3 H 0.12 2.52 7.94 -2.39 -0.02 2.50 16 4 C 0.50 19.30 6.50 87.65 0.57 19.87 16 5 O -0.57 -27.25 13.41 -3.04 -0.04 -27.29 16 6 N -0.71 -28.55 4.88 -446.10 -2.18 -30.72 16 7 C 0.25 12.75 2.21 44.25 0.10 12.85 16 8 H 0.04 2.50 7.58 -2.39 -0.02 2.48 16 9 C -0.56 -28.46 8.46 25.60 0.22 -28.24 16 10 H 0.09 4.28 7.73 -2.91 -0.02 4.26 16 11 C 0.01 0.70 5.20 84.66 0.44 1.14 16 12 N -0.88 -49.19 9.51 21.45 0.20 -48.99 16 13 Si 0.98 40.59 29.54 68.60 2.03 42.62 16 14 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.29 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 17 C 0.41 21.78 2.81 71.98 0.20 21.98 16 18 F -0.20 -10.03 16.94 44.97 0.76 -9.26 16 19 F -0.15 -8.75 12.91 44.97 0.58 -8.17 16 20 F -0.22 -11.59 15.67 44.97 0.70 -10.89 16 21 C -0.09 -2.38 2.72 -10.27 -0.03 -2.41 16 22 C -0.12 -1.99 7.63 31.12 0.24 -1.75 16 23 C -0.14 -2.69 8.08 31.12 0.25 -2.43 16 24 C -0.14 -3.77 6.19 31.12 0.19 -3.57 16 25 H 0.06 1.36 7.56 -2.39 -0.02 1.35 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.41 13.87 7.95 -92.71 -0.74 13.13 16 29 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.10 1.38 7.96 -2.39 -0.02 1.36 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 36 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 Total: -1.00 -65.33 305.50 5.23 -60.10 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.36 Total: 19.93 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 2.81 Total: 12.68 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.97 Total: -79.71 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.04 Total: -27.29 kcal Atomic # 9 Polarization: -30.37 SS G_CDS: 2.05 Total: -28.32 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -65.33 5.23 -60.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.175 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds