Wall clock time and date at job start Tue Mar 31 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.47422 * 2 1 4 4 C 1.50705 * 109.46972 * 120.00537 * 2 1 3 5 5 O 1.21277 * 120.00089 * 119.99889 * 4 2 1 6 6 N 1.34776 * 119.99557 * 300.00064 * 4 2 1 7 7 C 1.46495 * 119.99664 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.47232 * 324.99313 * 7 6 4 9 9 C 1.50707 * 109.46930 * 204.99876 * 7 6 4 10 10 H 1.07994 * 119.99813 * 354.16580 * 9 7 6 11 11 C 1.37875 * 119.99980 * 174.17196 * 9 7 6 12 12 N 1.31513 * 120.00140 * 332.17027 * 11 9 7 13 13 Si 1.86802 * 120.00281 * 152.44859 * 11 9 7 14 14 H 1.48492 * 109.47369 * 179.72603 * 13 11 9 15 15 H 1.48506 * 109.46678 * 299.72544 * 13 11 9 16 16 H 1.48495 * 109.46822 * 59.71918 * 13 11 9 17 17 C 1.53002 * 109.47646 * 84.99443 * 7 6 4 18 18 F 1.39904 * 109.47165 * 176.81193 * 17 7 6 19 19 F 1.39899 * 109.46745 * 296.81131 * 17 7 6 20 20 F 1.39898 * 109.46934 * 56.81232 * 17 7 6 21 21 C 1.53007 * 109.47213 * 240.00035 * 2 1 3 22 22 C 1.53773 * 113.61374 * 159.13645 * 21 2 1 23 23 C 1.53957 * 87.02187 * 220.04846 * 22 21 2 24 24 C 1.53780 * 113.61041 * 61.52933 * 21 2 1 25 25 H 1.09001 * 109.47472 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47287 * 299.99601 * 1 2 3 27 27 H 1.09004 * 109.47017 * 59.99676 * 1 2 3 28 28 H 0.96997 * 119.99856 * 359.97438 * 6 4 2 29 29 H 0.96997 * 120.00172 * 354.74589 * 12 11 9 30 30 H 1.09003 * 112.85170 * 290.33826 * 21 2 1 31 31 H 1.09004 * 113.61843 * 334.56951 * 22 21 2 32 32 H 1.09007 * 113.61562 * 105.47560 * 22 21 2 33 33 H 1.08992 * 113.53949 * 270.81691 * 23 22 21 34 34 H 1.09000 * 113.74415 * 139.94062 * 23 22 21 35 35 H 1.09006 * 113.61892 * 254.52857 * 24 21 2 36 36 H 1.08999 * 113.61671 * 25.43664 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7066 -0.2501 2.4545 7 6 2.1953 -0.9405 3.6506 8 1 2.2323 -2.0133 3.4613 9 6 1.2654 -0.6658 4.8044 10 1 0.4515 0.0342 4.6870 11 6 1.4540 -1.3080 6.0097 12 7 2.0242 -2.4927 6.0415 13 14 0.8924 -0.4990 7.5971 14 1 1.2017 -1.3907 8.7435 15 1 1.6009 0.7945 7.7709 16 1 -0.5716 -0.2576 7.5385 17 6 3.5978 -0.4347 3.9943 18 9 4.0352 -1.0404 5.1772 19 9 4.4768 -0.7545 2.9540 20 9 3.5638 0.9533 4.1660 21 6 2.0400 -0.7213 -1.2493 22 6 3.4866 -0.3576 -1.6230 23 6 3.0233 -0.3619 -3.0912 24 6 1.6120 -0.0509 -2.5654 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.1492 0.5387 2.5435 29 1 2.2429 -2.9480 5.2135 30 1 1.8520 -1.7947 -1.2248 31 1 3.7963 0.6245 -1.2657 32 1 4.2080 -1.1408 -1.3896 33 1 3.1055 -1.3372 -3.5708 34 1 3.4532 0.4415 -3.6895 35 1 0.8221 -0.5867 -3.0918 36 1 1.4082 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:56 Heat of formation + Delta-G solvation = -191.919535 kcal Electronic energy + Delta-G solvation = -23343.021520 eV Core-core repulsion = 19412.079610 eV Total energy + Delta-G solvation = -3930.941911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.76440 -46.31995 -46.21587 -39.88259 -38.02931 -34.84146 -33.16607 -32.25093 -28.14868 -26.10248 -25.18981 -24.46158 -23.21603 -21.38404 -19.73301 -19.29026 -17.94154 -17.26131 -17.02791 -16.72605 -16.14454 -15.38052 -14.97093 -14.74471 -13.96604 -13.75944 -13.38576 -13.24050 -12.95863 -12.76384 -12.73950 -12.58992 -12.47304 -12.45026 -12.43968 -12.39932 -12.01844 -11.55701 -11.31985 -11.12822 -11.02555 -10.76404 -10.47050 -10.24449 -10.21589 -10.06295 -9.56025 -9.15672 -8.47268 -8.36519 -6.79816 -4.50618 3.16040 3.30125 3.38171 3.54475 3.71382 4.19420 4.31977 4.62387 4.67900 4.73528 4.87052 4.91362 5.13386 5.23845 5.42032 5.44448 5.53327 5.59846 5.69931 5.72783 5.75351 5.81441 5.85531 5.89795 6.02804 6.15058 6.25462 6.33816 6.58974 6.65257 7.05109 7.33563 8.07489 8.24436 8.41469 8.81989 9.17130 10.54883 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.005477 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.858840 B = 5111.058827 C = 5564.459439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.092 0.908 4 C 0.508 3.492 5 O -0.536 6.536 6 N -0.707 5.707 7 C 0.237 3.763 8 H 0.077 0.923 9 C -0.649 4.649 10 H 0.073 0.927 11 C 0.052 3.948 12 N -0.846 5.846 13 Si 1.059 2.941 14 H -0.279 1.279 15 H -0.281 1.281 16 H -0.283 1.283 17 C 0.414 3.586 18 F -0.177 7.177 19 F -0.206 7.206 20 F -0.198 7.198 21 C -0.086 4.086 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.135 4.135 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.400 0.600 29 H 0.277 0.723 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 6.340 -12.227 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.110 0.890 4 C 0.294 3.706 5 O -0.412 6.412 6 N -0.356 5.356 7 C 0.130 3.870 8 H 0.094 0.906 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.162 4.162 12 N -0.474 5.474 13 Si 0.885 3.115 14 H -0.204 1.204 15 H -0.207 1.207 16 H -0.210 1.210 17 C 0.358 3.642 18 F -0.158 7.158 19 F -0.188 7.188 20 F -0.180 7.180 21 C -0.105 4.105 22 C -0.170 4.170 23 C -0.181 4.181 24 C -0.173 4.173 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.234 0.766 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.654 5.407 -10.662 12.068 hybrid contribution 0.136 0.746 -1.457 1.642 sum -1.518 6.153 -12.119 13.676 Atomic orbital electron populations 1.21727 0.93049 1.02786 1.02302 1.21343 0.97375 1.00315 0.93236 0.88992 1.20653 0.80276 0.84927 0.84752 1.90675 1.37549 1.26251 1.86745 1.45955 1.52578 1.31958 1.05103 1.19636 0.86990 0.95082 0.85308 0.90559 1.21566 1.17307 1.32732 0.96834 0.90911 1.25921 0.94075 0.93826 1.02350 1.70754 1.33972 1.10116 1.32576 0.83716 0.76334 0.76196 0.75261 1.20374 1.20668 1.20952 1.23050 0.91887 0.75161 0.74062 1.93150 1.91045 1.83060 1.48548 1.93097 1.73598 1.92631 1.59446 1.93012 1.97065 1.32452 1.95471 1.22325 0.96181 1.00299 0.91661 1.22921 0.96976 1.01848 0.95276 1.22836 0.96909 1.01527 0.96778 1.22958 0.96934 1.00712 0.96686 0.92088 0.91970 0.91743 0.76608 0.91174 0.88534 0.90556 0.91123 0.90416 0.91787 0.91645 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.91 37.16 0.33 -1.32 16 2 C -0.10 -1.41 2.45 -91.77 -0.23 -1.63 16 3 H 0.09 1.15 7.98 -51.93 -0.41 0.74 16 4 C 0.51 9.73 6.74 -10.98 -0.07 9.66 16 5 O -0.54 -12.21 14.39 5.56 0.08 -12.13 16 6 N -0.71 -14.25 4.83 -54.93 -0.27 -14.51 16 7 C 0.24 5.79 2.00 -69.08 -0.14 5.65 16 8 H 0.08 2.08 6.46 -51.93 -0.34 1.75 16 9 C -0.65 -16.62 8.32 -34.44 -0.29 -16.91 16 10 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 11 C 0.05 1.38 4.23 -17.82 -0.08 1.31 16 12 N -0.85 -23.83 12.35 55.43 0.68 -23.15 16 13 Si 1.06 23.42 29.99 -169.99 -5.10 18.33 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 17 C 0.41 10.36 2.82 37.16 0.10 10.47 16 18 F -0.18 -4.74 14.71 2.25 0.03 -4.71 16 19 F -0.21 -5.11 15.77 2.25 0.04 -5.07 16 20 F -0.20 -4.73 16.97 2.25 0.04 -4.70 16 21 C -0.09 -1.13 2.51 -89.81 -0.23 -1.36 16 22 C -0.13 -1.73 7.54 -25.83 -0.19 -1.92 16 23 C -0.14 -1.48 8.09 -25.82 -0.21 -1.69 16 24 C -0.14 -1.37 6.75 -25.92 -0.17 -1.54 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 27 H 0.06 0.61 7.50 -51.93 -0.39 0.22 16 28 H 0.40 7.03 7.94 -40.82 -0.32 6.71 16 29 H 0.28 7.94 7.25 -40.82 -0.30 7.64 16 30 H 0.10 1.43 7.91 -51.93 -0.41 1.02 16 31 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -29.53 307.95 -5.74 -35.27 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.72 Total: 5.31 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.17 Total: 0.72 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.42 Total: -37.66 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 0.11 Total: -14.48 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.10 Total: 18.33 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.53 -5.74 -35.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.650 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds