Wall clock time and date at job start Tue Mar 31 2020 01:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.47422 * 2 1 4 4 C 1.50705 * 109.46972 * 120.00537 * 2 1 3 5 5 O 1.21277 * 120.00089 * 119.99889 * 4 2 1 6 6 N 1.34776 * 119.99557 * 300.00064 * 4 2 1 7 7 C 1.46495 * 119.99664 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.47232 * 324.99313 * 7 6 4 9 9 C 1.50707 * 109.46930 * 204.99876 * 7 6 4 10 10 H 1.07994 * 119.99813 * 354.16580 * 9 7 6 11 11 C 1.37875 * 119.99980 * 174.17196 * 9 7 6 12 12 N 1.31513 * 120.00140 * 332.17027 * 11 9 7 13 13 Si 1.86802 * 120.00281 * 152.44859 * 11 9 7 14 14 H 1.48492 * 109.47369 * 179.72603 * 13 11 9 15 15 H 1.48506 * 109.46678 * 299.72544 * 13 11 9 16 16 H 1.48495 * 109.46822 * 59.71918 * 13 11 9 17 17 C 1.53002 * 109.47646 * 84.99443 * 7 6 4 18 18 F 1.39904 * 109.47165 * 176.81193 * 17 7 6 19 19 F 1.39899 * 109.46745 * 296.81131 * 17 7 6 20 20 F 1.39898 * 109.46934 * 56.81232 * 17 7 6 21 21 C 1.53007 * 109.47213 * 240.00035 * 2 1 3 22 22 C 1.53773 * 113.61374 * 159.13645 * 21 2 1 23 23 C 1.53957 * 87.02187 * 220.04846 * 22 21 2 24 24 C 1.53780 * 113.61041 * 61.52933 * 21 2 1 25 25 H 1.09001 * 109.47472 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47287 * 299.99601 * 1 2 3 27 27 H 1.09004 * 109.47017 * 59.99676 * 1 2 3 28 28 H 0.96997 * 119.99856 * 359.97438 * 6 4 2 29 29 H 0.96997 * 120.00172 * 354.74589 * 12 11 9 30 30 H 1.09003 * 112.85170 * 290.33826 * 21 2 1 31 31 H 1.09004 * 113.61843 * 334.56951 * 22 21 2 32 32 H 1.09007 * 113.61562 * 105.47560 * 22 21 2 33 33 H 1.08992 * 113.53949 * 270.81691 * 23 22 21 34 34 H 1.09000 * 113.74415 * 139.94062 * 23 22 21 35 35 H 1.09006 * 113.61892 * 254.52857 * 24 21 2 36 36 H 1.08999 * 113.61671 * 25.43664 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7066 -0.2501 2.4545 7 6 2.1953 -0.9405 3.6506 8 1 2.2323 -2.0133 3.4613 9 6 1.2654 -0.6658 4.8044 10 1 0.4515 0.0342 4.6870 11 6 1.4540 -1.3080 6.0097 12 7 2.0242 -2.4927 6.0415 13 14 0.8924 -0.4990 7.5971 14 1 1.2017 -1.3907 8.7435 15 1 1.6009 0.7945 7.7709 16 1 -0.5716 -0.2576 7.5385 17 6 3.5978 -0.4347 3.9943 18 9 4.0352 -1.0404 5.1772 19 9 4.4768 -0.7545 2.9540 20 9 3.5638 0.9533 4.1660 21 6 2.0400 -0.7213 -1.2493 22 6 3.4866 -0.3576 -1.6230 23 6 3.0233 -0.3619 -3.0912 24 6 1.6120 -0.0509 -2.5654 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.1492 0.5387 2.5435 29 1 2.2429 -2.9480 5.2135 30 1 1.8520 -1.7947 -1.2248 31 1 3.7963 0.6245 -1.2657 32 1 4.2080 -1.1408 -1.3896 33 1 3.1055 -1.3372 -3.5708 34 1 3.4532 0.4415 -3.6895 35 1 0.8221 -0.5867 -3.0918 36 1 1.4082 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:55 Heat of formation + Delta-G solvation = -209.654922 kcal Electronic energy + Delta-G solvation = -23343.790585 eV Core-core repulsion = 19412.079610 eV Total energy + Delta-G solvation = -3931.710975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.81431 -48.35074 -48.29242 -41.22675 -39.26629 -36.70090 -34.77421 -33.69050 -29.99601 -27.05756 -26.51512 -26.10593 -24.66487 -23.09342 -21.25339 -20.29692 -19.80872 -19.26660 -19.05240 -18.45104 -17.79280 -16.79178 -16.12012 -16.02581 -15.66644 -15.40487 -15.26856 -15.08011 -14.81338 -14.68707 -14.57279 -14.51621 -14.45229 -13.90652 -13.50844 -13.36755 -13.22264 -13.03633 -13.00605 -12.53151 -12.48860 -12.13275 -11.93858 -11.48654 -11.40320 -11.24477 -11.01047 -10.69085 -10.45991 -10.15975 -8.89241 -6.60061 1.53592 1.57569 1.65852 1.82644 2.06761 2.26981 2.49740 2.85579 3.38720 3.49730 3.57526 3.68461 3.72937 3.79979 3.98999 4.03637 4.30581 4.39650 4.48754 4.64269 4.84923 4.86426 4.89614 4.94484 5.04592 5.11287 5.16937 5.28977 5.34319 5.37069 5.41967 5.64234 6.01944 6.26595 6.66097 7.11953 7.31243 8.43837 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.005477 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.858840 B = 5111.058827 C = 5564.459439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.116 0.884 4 C 0.501 3.499 5 O -0.579 6.579 6 N -0.702 5.702 7 C 0.241 3.759 8 H 0.040 0.960 9 C -0.652 4.652 10 H 0.085 0.915 11 C 0.008 3.992 12 N -0.873 5.873 13 Si 1.103 2.897 14 H -0.285 1.285 15 H -0.271 1.271 16 H -0.256 1.256 17 C 0.415 3.585 18 F -0.189 7.189 19 F -0.207 7.207 20 F -0.189 7.189 21 C -0.096 4.096 22 C -0.145 4.145 23 C -0.134 4.134 24 C -0.117 4.117 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.414 0.586 29 H 0.260 0.740 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 8.796 -13.355 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.134 0.866 4 C 0.289 3.711 5 O -0.458 6.458 6 N -0.353 5.353 7 C 0.133 3.867 8 H 0.058 0.942 9 C -0.687 4.687 10 H 0.103 0.897 11 C -0.200 4.200 12 N -0.503 5.503 13 Si 0.923 3.077 14 H -0.211 1.211 15 H -0.196 1.196 16 H -0.181 1.181 17 C 0.359 3.641 18 F -0.171 7.171 19 F -0.189 7.189 20 F -0.170 7.170 21 C -0.115 4.115 22 C -0.182 4.182 23 C -0.171 4.171 24 C -0.154 4.154 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.251 0.749 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.258 7.894 -11.826 14.587 hybrid contribution 0.684 -0.045 -1.154 1.342 sum -2.575 7.849 -12.980 15.385 Atomic orbital electron populations 1.21748 0.90917 1.02530 1.04227 1.21423 0.98952 1.00549 0.90229 0.86649 1.21760 0.79174 0.84460 0.85699 1.90657 1.39438 1.28345 1.87325 1.45889 1.52815 1.32240 1.04333 1.19248 0.86902 0.93638 0.86928 0.94209 1.21839 1.17588 1.32313 0.96999 0.89674 1.27302 0.93425 0.93503 1.05754 1.70879 1.36374 1.11483 1.31537 0.83161 0.77637 0.75402 0.71477 1.21061 1.19639 1.18078 1.23055 0.92003 0.75486 0.73599 1.93123 1.91222 1.83404 1.49354 1.93093 1.73653 1.92708 1.59401 1.93019 1.97036 1.31564 1.95408 1.22362 0.96719 0.99283 0.93151 1.23001 0.96327 1.00986 0.97926 1.22806 0.96985 1.02351 0.94987 1.22916 0.97014 1.01661 0.93806 0.93464 0.91515 0.88340 0.74915 0.92964 0.91043 0.90148 0.94118 0.90358 0.89939 0.90229 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.91 71.98 0.64 -2.17 16 2 C -0.09 -2.35 2.45 -11.54 -0.03 -2.37 16 3 H 0.12 2.50 7.98 -2.39 -0.02 2.49 16 4 C 0.50 19.20 6.74 87.66 0.59 19.79 16 5 O -0.58 -27.38 14.39 -3.02 -0.04 -27.43 16 6 N -0.70 -28.07 4.83 -446.09 -2.16 -30.22 16 7 C 0.24 11.99 2.00 44.25 0.09 12.08 16 8 H 0.04 2.29 6.46 -2.39 -0.02 2.28 16 9 C -0.65 -33.17 8.32 25.60 0.21 -32.96 16 10 H 0.09 4.05 7.86 -2.91 -0.02 4.03 16 11 C 0.01 0.43 4.23 84.65 0.36 0.79 16 12 N -0.87 -50.32 12.35 21.45 0.26 -50.05 16 13 Si 1.10 46.14 29.99 68.60 2.06 48.19 16 14 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 16 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 17 C 0.41 20.96 2.82 71.98 0.20 21.16 16 18 F -0.19 -10.37 14.71 44.97 0.66 -9.71 16 19 F -0.21 -10.47 15.77 44.97 0.71 -9.76 16 20 F -0.19 -8.85 16.97 44.97 0.76 -8.09 16 21 C -0.10 -2.42 2.51 -10.27 -0.03 -2.44 16 22 C -0.14 -3.68 7.54 31.18 0.24 -3.45 16 23 C -0.13 -2.45 8.09 31.18 0.25 -2.20 16 24 C -0.12 -1.95 6.75 31.12 0.21 -1.74 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.32 7.56 -2.39 -0.02 1.30 16 27 H 0.10 1.40 7.50 -2.39 -0.02 1.38 16 28 H 0.41 13.91 7.94 -92.71 -0.74 13.17 16 29 H 0.26 15.61 7.25 -92.71 -0.67 14.94 16 30 H 0.07 2.15 7.91 -2.39 -0.02 2.13 16 31 H 0.08 1.94 7.99 -2.38 -0.02 1.92 16 32 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -65.52 307.95 5.46 -60.06 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.46 Total: 20.51 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 2.74 Total: 6.50 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.89 Total: -80.28 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 9 Polarization: -29.69 SS G_CDS: 2.13 Total: -27.56 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.06 Total: 48.19 kcal Total: -65.52 5.46 -60.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.592 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds