Wall clock time and date at job start Tue Mar 31 2020 01:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.01831 * 2 1 4 4 C 1.54268 * 110.02863 * 238.61528 * 2 1 3 5 5 C 1.54897 * 104.19359 * 217.10524 * 4 2 1 6 6 C 1.54882 * 102.74839 * 37.94171 * 5 4 2 7 7 H 1.09003 * 110.48391 * 80.73538 * 6 5 4 8 8 C 1.50703 * 110.48708 * 203.38064 * 6 5 4 9 9 O 1.21279 * 119.99783 * 118.54668 * 8 6 5 10 10 N 1.34774 * 119.99581 * 298.54591 * 8 6 5 11 11 C 1.46507 * 119.99798 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46973 * 35.00019 * 11 10 8 13 13 C 1.50688 * 109.47257 * 155.00300 * 11 10 8 14 14 H 1.08005 * 120.00330 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99985 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00202 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00067 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46985 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47310 * 119.99734 * 17 15 13 20 20 H 1.48497 * 109.47245 * 240.00073 * 17 15 13 21 21 C 1.53001 * 109.46779 * 275.00308 * 11 10 8 22 22 F 1.39902 * 109.47428 * 60.00045 * 21 11 10 23 23 F 1.39905 * 109.46923 * 179.97438 * 21 11 10 24 24 F 1.39904 * 109.47107 * 299.99583 * 21 11 10 25 25 C 1.53876 * 110.03340 * 121.44852 * 2 1 3 26 26 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46934 * 299.93318 * 1 2 3 28 28 H 1.09001 * 109.47021 * 59.93098 * 1 2 3 29 29 H 1.08999 * 110.49069 * 98.43040 * 4 2 1 30 30 H 1.08999 * 110.60474 * 335.83867 * 4 2 1 31 31 H 1.08994 * 110.75328 * 156.26004 * 5 4 2 32 32 H 1.09004 * 110.75215 * 279.62712 * 5 4 2 33 33 H 0.96999 * 120.00593 * 0.02562 * 10 8 6 34 34 H 0.96994 * 120.00281 * 180.02562 * 16 15 13 35 35 H 1.08994 * 110.02975 * 238.56631 * 25 2 1 36 36 H 1.09000 * 110.03018 * 359.95314 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7548 -1.2373 5 6 3.3137 -1.5004 -0.7200 6 6 2.8875 -1.9410 0.7024 7 1 2.2771 -2.8429 0.6555 8 6 4.0990 -2.1670 1.5697 9 8 4.2626 -1.4990 2.5687 10 7 5.0006 -3.1112 1.2352 11 6 6.1781 -3.3313 2.0787 12 1 5.9105 -3.1757 3.1238 13 6 6.6735 -4.7420 1.8915 14 1 6.1622 -5.4084 1.2125 15 6 7.7790 -5.1825 2.5879 16 7 8.4014 -4.3714 3.4151 17 14 8.3927 -6.9316 2.3565 18 1 7.5244 -7.6356 1.3790 19 1 9.7882 -6.9036 1.8494 20 1 8.3531 -7.6464 3.6576 21 6 7.2803 -2.3469 1.6824 22 9 6.8204 -1.0371 1.8562 23 9 8.4046 -2.5566 2.4883 24 9 7.6238 -2.5465 0.3410 25 6 2.0572 -0.7542 1.2333 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5128 0.8906 28 1 -0.3633 0.5149 -0.8894 29 1 2.3297 -0.0526 -2.0256 30 1 1.3152 -1.4650 -1.5997 31 1 3.5325 -2.3671 -1.3436 32 1 4.1710 -0.8287 -0.6757 33 1 4.8699 -3.6452 0.4360 34 1 9.1793 -4.6811 3.9047 35 1 2.6868 -0.0964 1.8323 36 1 1.2230 -1.1196 1.8323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:47 Heat of formation + Delta-G solvation = -200.339549 kcal Electronic energy + Delta-G solvation = -23291.170050 eV Core-core repulsion = 19359.863020 eV Total energy + Delta-G solvation = -3931.307030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.33949 -45.99546 -45.60388 -39.62374 -37.37366 -34.62789 -32.62224 -31.38482 -28.93050 -28.17878 -25.18412 -24.53036 -22.23493 -20.94457 -19.87373 -19.16608 -17.57302 -16.83442 -16.68168 -16.58380 -15.81335 -15.29149 -14.88376 -14.72419 -14.03640 -13.77445 -13.38886 -13.12672 -12.95976 -12.89324 -12.47746 -12.39256 -12.27355 -12.14289 -11.97224 -11.81142 -11.58811 -11.20650 -11.00589 -10.88902 -10.77411 -10.75851 -10.68168 -10.64934 -10.38707 -10.32723 -9.64296 -9.07866 -8.73186 -8.23636 -6.24110 -4.47928 3.16897 3.24030 3.26930 3.28033 3.85792 4.20948 4.55792 4.59145 4.65492 4.81129 4.92940 5.25862 5.31914 5.39877 5.53139 5.60459 5.64069 5.66664 5.79060 5.85952 5.88434 5.95520 5.99925 6.08543 6.11781 6.23936 6.30528 6.43221 6.52935 6.95708 7.21294 7.48005 7.63063 8.36470 8.50361 8.93578 9.20256 10.67631 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.005205 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.917441 B = 5378.592217 C = 5686.934567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.113 4.113 7 H 0.097 0.903 8 C 0.511 3.489 9 O -0.538 6.538 10 N -0.711 5.711 11 C 0.243 3.757 12 H 0.084 0.916 13 C -0.551 4.551 14 H 0.077 0.923 15 C 0.064 3.936 16 N -0.840 5.840 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.417 3.583 22 F -0.218 7.218 23 F -0.137 7.137 24 F -0.210 7.210 25 C -0.107 4.107 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.656 3.882 -7.764 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.134 4.134 7 H 0.115 0.885 8 C 0.296 3.704 9 O -0.415 6.415 10 N -0.360 5.360 11 C 0.138 3.862 12 H 0.101 0.899 13 C -0.588 4.588 14 H 0.096 0.904 15 C -0.145 4.145 16 N -0.473 5.473 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.361 3.639 22 F -0.200 7.200 23 F -0.119 7.119 24 F -0.192 7.192 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.337 4.403 -6.882 13.176 hybrid contribution 0.639 -0.954 -0.552 1.274 sum -9.698 3.449 -7.434 12.696 Atomic orbital electron populations 1.21882 0.95219 1.01644 1.01301 1.21773 0.95412 0.99626 0.94914 0.91072 1.22433 0.97028 0.98892 0.97161 1.22488 0.98320 1.00496 0.94006 1.22135 0.95334 1.00451 0.95496 0.88523 1.20504 0.84117 0.79849 0.85913 1.90671 1.76784 1.46890 1.27120 1.46081 1.23591 1.37443 1.28890 1.19710 0.79220 0.93795 0.93507 0.89853 1.20918 1.14843 0.94519 1.28534 0.90445 1.25095 0.95739 0.98858 0.94761 1.70411 1.19234 1.33696 1.23968 0.86163 0.78769 0.82696 0.78223 1.19406 1.20565 1.20568 1.23141 0.86857 0.79789 0.74124 1.93067 1.89278 1.42405 1.95237 1.93403 1.53434 1.93392 1.71625 1.92985 1.93644 1.95096 1.37426 1.22138 0.99019 0.96226 0.97069 0.92644 0.92797 0.93010 0.91695 0.91422 0.90872 0.90849 0.76837 0.92187 0.89800 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.84 37.16 0.33 -0.96 16 2 C -0.10 -1.07 3.50 -89.50 -0.31 -1.39 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.20 6.36 -25.07 -0.16 -1.36 16 5 C -0.12 -1.43 6.26 -24.74 -0.15 -1.59 16 6 C -0.11 -1.61 3.25 -90.11 -0.29 -1.90 16 7 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 8 C 0.51 9.98 6.68 -10.99 -0.07 9.90 16 9 O -0.54 -12.62 14.03 5.56 0.08 -12.54 16 10 N -0.71 -14.46 4.93 -54.93 -0.27 -14.73 16 11 C 0.24 6.06 2.21 -69.08 -0.15 5.91 16 12 H 0.08 2.34 7.58 -51.93 -0.39 1.94 16 13 C -0.55 -14.05 8.46 -34.45 -0.29 -14.34 16 14 H 0.08 1.86 7.74 -52.48 -0.41 1.46 16 15 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.11 9.50 55.43 0.53 -22.59 16 17 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.42 10.77 2.81 37.16 0.10 10.87 16 22 F -0.22 -5.59 15.68 2.25 0.04 -5.56 16 23 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 24 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 25 C -0.11 -1.44 5.81 -25.61 -0.15 -1.59 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 33 H 0.40 6.98 8.52 -40.82 -0.35 6.64 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.08 1.35 6.90 -51.93 -0.36 0.99 16 36 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -29.62 303.85 -6.08 -35.70 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.82 Total: 3.91 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.25 Total: 5.14 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.26 Total: -37.32 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 0.10 Total: -14.51 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.62 -6.08 -35.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.644 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds