Wall clock time and date at job start Tue Mar 31 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.01831 * 2 1 4 4 C 1.54268 * 110.02863 * 238.61528 * 2 1 3 5 5 C 1.54897 * 104.19359 * 217.10524 * 4 2 1 6 6 C 1.54882 * 102.74839 * 37.94171 * 5 4 2 7 7 H 1.09003 * 110.48391 * 80.73538 * 6 5 4 8 8 C 1.50703 * 110.48708 * 203.38064 * 6 5 4 9 9 O 1.21279 * 119.99783 * 118.54668 * 8 6 5 10 10 N 1.34774 * 119.99581 * 298.54591 * 8 6 5 11 11 C 1.46507 * 119.99798 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46973 * 35.00019 * 11 10 8 13 13 C 1.50688 * 109.47257 * 155.00300 * 11 10 8 14 14 H 1.08005 * 120.00330 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99985 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00202 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00067 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46985 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47310 * 119.99734 * 17 15 13 20 20 H 1.48497 * 109.47245 * 240.00073 * 17 15 13 21 21 C 1.53001 * 109.46779 * 275.00308 * 11 10 8 22 22 F 1.39902 * 109.47428 * 60.00045 * 21 11 10 23 23 F 1.39905 * 109.46923 * 179.97438 * 21 11 10 24 24 F 1.39904 * 109.47107 * 299.99583 * 21 11 10 25 25 C 1.53876 * 110.03340 * 121.44852 * 2 1 3 26 26 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46934 * 299.93318 * 1 2 3 28 28 H 1.09001 * 109.47021 * 59.93098 * 1 2 3 29 29 H 1.08999 * 110.49069 * 98.43040 * 4 2 1 30 30 H 1.08999 * 110.60474 * 335.83867 * 4 2 1 31 31 H 1.08994 * 110.75328 * 156.26004 * 5 4 2 32 32 H 1.09004 * 110.75215 * 279.62712 * 5 4 2 33 33 H 0.96999 * 120.00593 * 0.02562 * 10 8 6 34 34 H 0.96994 * 120.00281 * 180.02562 * 16 15 13 35 35 H 1.08994 * 110.02975 * 238.56631 * 25 2 1 36 36 H 1.09000 * 110.03018 * 359.95314 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7548 -1.2373 5 6 3.3137 -1.5004 -0.7200 6 6 2.8875 -1.9410 0.7024 7 1 2.2771 -2.8429 0.6555 8 6 4.0990 -2.1670 1.5697 9 8 4.2626 -1.4990 2.5687 10 7 5.0006 -3.1112 1.2352 11 6 6.1781 -3.3313 2.0787 12 1 5.9105 -3.1757 3.1238 13 6 6.6735 -4.7420 1.8915 14 1 6.1622 -5.4084 1.2125 15 6 7.7790 -5.1825 2.5879 16 7 8.4014 -4.3714 3.4151 17 14 8.3927 -6.9316 2.3565 18 1 7.5244 -7.6356 1.3790 19 1 9.7882 -6.9036 1.8494 20 1 8.3531 -7.6464 3.6576 21 6 7.2803 -2.3469 1.6824 22 9 6.8204 -1.0371 1.8562 23 9 8.4046 -2.5566 2.4883 24 9 7.6238 -2.5465 0.3410 25 6 2.0572 -0.7542 1.2333 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5128 0.8906 28 1 -0.3633 0.5149 -0.8894 29 1 2.3297 -0.0526 -2.0256 30 1 1.3152 -1.4650 -1.5997 31 1 3.5325 -2.3671 -1.3436 32 1 4.1710 -0.8287 -0.6757 33 1 4.8699 -3.6452 0.4360 34 1 9.1793 -4.6811 3.9047 35 1 2.6868 -0.0964 1.8323 36 1 1.2230 -1.1196 1.8323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:46 Heat of formation + Delta-G solvation = -218.232898 kcal Electronic energy + Delta-G solvation = -23291.945964 eV Core-core repulsion = 19359.863020 eV Total energy + Delta-G solvation = -3932.082944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.43901 -48.07527 -47.74924 -41.05434 -38.58753 -36.47712 -34.49040 -32.47010 -30.30403 -29.59541 -26.65520 -26.10347 -23.81898 -22.48839 -21.16030 -20.37641 -19.27745 -18.87668 -18.66498 -18.39782 -17.57430 -16.88465 -16.37842 -16.13025 -15.44384 -15.21551 -14.99320 -14.79410 -14.50080 -14.41782 -14.30825 -14.22555 -14.04754 -13.95250 -13.86333 -13.10877 -12.92443 -12.82390 -12.67668 -12.55008 -12.21954 -12.04304 -11.67865 -11.61708 -11.55490 -11.51184 -11.27060 -10.71068 -10.68750 -10.05190 -8.22432 -6.53481 1.45452 1.46637 1.59875 1.68975 2.22783 2.40376 2.53185 2.92994 3.54216 3.62222 3.74228 3.80676 3.89282 4.11997 4.28548 4.40127 4.45576 4.56673 4.59523 4.74554 4.77353 4.91735 4.99946 5.04990 5.17564 5.19556 5.33309 5.38606 5.39392 5.47118 5.55929 5.61242 5.64627 6.52024 6.74979 7.16334 7.39138 8.70683 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.005205 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.917441 B = 5378.592217 C = 5686.934567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.105 4.105 7 H 0.127 0.873 8 C 0.504 3.496 9 O -0.584 6.584 10 N -0.704 5.704 11 C 0.250 3.750 12 H 0.043 0.957 13 C -0.560 4.560 14 H 0.093 0.907 15 C 0.013 3.987 16 N -0.876 5.876 17 Si 0.985 3.015 18 H -0.254 1.254 19 H -0.281 1.281 20 H -0.278 1.278 21 C 0.414 3.586 22 F -0.221 7.221 23 F -0.152 7.152 24 F -0.202 7.202 25 C -0.108 4.108 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.413 0.587 34 H 0.268 0.732 35 H 0.048 0.952 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 2.558 -9.952 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.126 4.126 7 H 0.144 0.856 8 C 0.293 3.707 9 O -0.463 6.463 10 N -0.355 5.355 11 C 0.142 3.858 12 H 0.061 0.939 13 C -0.596 4.596 14 H 0.111 0.889 15 C -0.192 4.192 16 N -0.511 5.511 17 Si 0.808 3.192 18 H -0.177 1.177 19 H -0.207 1.207 20 H -0.204 1.204 21 C 0.358 3.642 22 F -0.203 7.203 23 F -0.133 7.133 24 F -0.184 7.184 25 C -0.146 4.146 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.250 0.750 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.993 3.075 -9.110 15.371 hybrid contribution 1.146 -0.468 0.165 1.249 sum -10.846 2.607 -8.945 14.299 Atomic orbital electron populations 1.21849 0.93366 1.02416 1.02004 1.21756 0.96902 0.98966 0.93876 0.91701 1.22424 0.96123 0.99197 0.96836 1.22524 0.98668 1.01092 0.92983 1.22230 0.92947 1.02024 0.95379 0.85557 1.21541 0.85011 0.78434 0.85761 1.90651 1.77965 1.48339 1.29395 1.45966 1.22493 1.38086 1.28914 1.19304 0.80453 0.93719 0.92297 0.93913 1.21265 1.14964 0.94749 1.28652 0.88860 1.26039 0.95943 1.02959 0.94269 1.70544 1.19735 1.35786 1.24994 0.85093 0.78061 0.77638 0.78416 1.17692 1.20719 1.20359 1.23322 0.86791 0.79896 0.74240 1.93058 1.89254 1.42657 1.95285 1.93374 1.54275 1.93499 1.72152 1.92984 1.93608 1.95058 1.36738 1.22153 0.98604 0.95678 0.98164 0.91814 0.92980 0.91510 0.90499 0.89166 0.88863 0.93330 0.74988 0.92207 0.93350 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.84 71.98 0.64 -1.45 16 2 C -0.10 -1.90 3.50 -10.07 -0.04 -1.93 16 3 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.11 -1.85 6.36 31.67 0.20 -1.65 16 5 C -0.11 -2.59 6.26 31.89 0.20 -2.39 16 6 C -0.10 -2.82 3.25 -10.47 -0.03 -2.86 16 7 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 8 C 0.50 19.83 6.68 87.66 0.59 20.42 16 9 O -0.58 -28.51 14.03 -3.02 -0.04 -28.55 16 10 N -0.70 -28.51 4.93 -446.10 -2.20 -30.71 16 11 C 0.25 12.68 2.21 44.24 0.10 12.77 16 12 H 0.04 2.53 7.58 -2.39 -0.02 2.51 16 13 C -0.56 -28.31 8.46 25.60 0.22 -28.10 16 14 H 0.09 4.32 7.74 -2.91 -0.02 4.30 16 15 C 0.01 0.67 5.20 84.66 0.44 1.11 16 16 N -0.88 -49.09 9.50 21.45 0.20 -48.88 16 17 Si 0.98 40.50 29.54 68.60 2.03 42.53 16 18 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 21 C 0.41 21.80 2.81 71.98 0.20 22.00 16 22 F -0.22 -11.67 15.68 44.97 0.70 -10.96 16 23 F -0.15 -8.72 12.91 44.97 0.58 -8.14 16 24 F -0.20 -9.97 16.94 44.97 0.76 -9.21 16 25 C -0.11 -2.84 5.81 31.32 0.18 -2.65 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.19 7.86 -2.39 -0.02 1.17 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.34 8.05 -2.38 -0.02 1.32 16 33 H 0.41 13.89 8.52 -92.71 -0.79 13.10 16 34 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.05 1.62 6.90 -2.39 -0.02 1.60 16 36 H 0.07 1.79 7.67 -2.39 -0.02 1.77 16 Total: -1.00 -65.58 303.85 5.04 -60.54 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.31 Total: 18.11 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 2.69 Total: 15.27 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.99 Total: -79.59 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.04 Total: -28.55 kcal Atomic # 9 Polarization: -30.35 SS G_CDS: 2.05 Total: -28.31 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -65.58 5.04 -60.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.696 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds