Wall clock time and date at job start Tue Mar 31 2020 01:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 110.01520 * 2 1 4 4 C 1.54265 * 110.02757 * 238.60625 * 2 1 3 5 5 C 1.54901 * 104.19356 * 217.10659 * 4 2 1 6 6 C 1.54887 * 102.74460 * 37.94569 * 5 4 2 7 7 H 1.09002 * 110.48515 * 80.87222 * 6 5 4 8 8 C 1.50700 * 110.48205 * 203.37920 * 6 5 4 9 9 O 1.21285 * 119.99925 * 118.54943 * 8 6 5 10 10 N 1.34773 * 120.00343 * 298.54645 * 8 6 5 11 11 C 1.46504 * 120.00506 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46923 * 325.00158 * 11 10 8 13 13 C 1.50696 * 109.47293 * 204.99973 * 11 10 8 14 14 H 1.08004 * 120.00001 * 274.87594 * 13 11 10 15 15 C 1.37878 * 120.00010 * 94.87065 * 13 11 10 16 16 N 1.31508 * 120.00239 * 174.99730 * 15 13 11 17 17 Si 1.86798 * 119.99809 * 355.00136 * 15 13 11 18 18 H 1.48504 * 109.47242 * 275.26741 * 17 15 13 19 19 H 1.48494 * 109.47503 * 35.26752 * 17 15 13 20 20 H 1.48504 * 109.47146 * 155.27052 * 17 15 13 21 21 C 1.52999 * 109.46724 * 84.99929 * 11 10 8 22 22 F 1.39901 * 109.46932 * 174.96764 * 21 11 10 23 23 F 1.39900 * 109.47395 * 294.96540 * 21 11 10 24 24 F 1.39898 * 109.47201 * 54.97038 * 21 11 10 25 25 C 1.53875 * 110.02903 * 121.44188 * 2 1 3 26 26 H 1.08999 * 109.47682 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47156 * 299.94032 * 1 2 3 28 28 H 1.09006 * 109.47208 * 59.93855 * 1 2 3 29 29 H 1.08995 * 110.48481 * 98.43300 * 4 2 1 30 30 H 1.09002 * 110.60594 * 335.83990 * 4 2 1 31 31 H 1.08996 * 110.75373 * 279.63294 * 5 4 2 32 32 H 1.08994 * 110.75134 * 156.26242 * 5 4 2 33 33 H 0.97005 * 119.99564 * 0.02562 * 10 8 6 34 34 H 0.97000 * 120.00690 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.03578 * 359.97438 * 25 2 1 36 36 H 1.08993 * 110.03093 * 238.56533 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7550 -1.2372 5 6 3.3136 -1.5006 -0.7197 6 6 2.8873 -1.9410 0.7027 7 1 2.2789 -2.8443 0.6560 8 6 4.0988 -2.1669 1.5701 9 8 4.2624 -1.4989 2.5691 10 7 5.0005 -3.1111 1.2357 11 6 6.1779 -3.3311 2.0792 12 1 6.5102 -2.3797 2.4945 13 6 7.2844 -3.9314 1.2507 14 1 7.3254 -4.9997 1.0973 15 6 8.2442 -3.1168 0.6884 16 7 9.2637 -3.6467 0.0487 17 14 8.0965 -1.2605 0.8355 18 1 7.2209 -0.7462 -0.2481 19 1 7.5081 -0.9135 2.1539 20 1 9.4432 -0.6458 0.7172 21 6 5.8178 -4.2869 3.2184 22 9 6.9678 -4.5873 3.9562 23 9 4.8727 -3.6817 4.0538 24 9 5.2835 -5.4655 2.6869 25 6 2.0570 -0.7541 1.2334 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5129 0.8905 28 1 -0.3634 0.5148 -0.8895 29 1 2.3296 -0.0528 -2.0254 30 1 1.3151 -1.4653 -1.5995 31 1 4.1709 -0.8289 -0.6754 32 1 3.5324 -2.3674 -1.3433 33 1 4.8697 -3.6452 0.4365 34 1 9.9392 -3.0737 -0.3466 35 1 1.2228 -1.1197 1.8322 36 1 2.6866 -0.0962 1.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:53 Heat of formation + Delta-G solvation = -223.224284 kcal Electronic energy + Delta-G solvation = -23236.068855 eV Core-core repulsion = 19303.769468 eV Total energy + Delta-G solvation = -3932.299386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.03794 -46.56555 -46.51519 -39.67867 -37.43478 -34.76698 -32.62228 -31.48635 -29.20024 -28.54600 -25.20186 -24.93390 -22.18514 -20.92595 -19.94533 -19.21951 -18.10206 -17.50798 -16.99545 -16.73374 -16.42814 -15.38358 -15.04105 -14.83692 -14.15220 -13.59899 -13.48511 -13.43624 -13.27052 -13.10986 -13.01687 -12.95355 -12.73692 -12.69052 -12.62827 -12.14925 -11.87181 -11.54577 -11.14591 -10.99258 -10.77166 -10.75985 -10.69294 -10.63178 -10.35769 -10.10896 -9.76477 -9.33347 -8.94346 -8.38645 -6.53649 -4.68373 3.08598 3.13086 3.19857 3.24996 3.71094 3.94853 4.07627 4.57119 4.61730 4.76020 4.86077 5.17746 5.21271 5.26765 5.30900 5.34849 5.46521 5.53177 5.61186 5.66077 5.70484 5.79578 5.94480 6.00125 6.07992 6.11005 6.29140 6.38112 6.42226 6.49597 6.91135 7.17011 7.85145 8.32957 8.51114 8.86462 9.01951 10.54917 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.006975 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.384650 B = 4013.138738 C = 4923.234119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.115 4.115 7 H 0.097 0.903 8 C 0.504 3.496 9 O -0.545 6.545 10 N -0.713 5.713 11 C 0.193 3.807 12 H 0.098 0.902 13 C -0.535 4.535 14 H 0.093 0.907 15 C 0.100 3.900 16 N -0.861 5.861 17 Si 0.871 3.129 18 H -0.267 1.267 19 H -0.255 1.255 20 H -0.280 1.280 21 C 0.438 3.562 22 F -0.182 7.182 23 F -0.196 7.196 24 F -0.194 7.194 25 C -0.106 4.106 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.400 0.600 34 H 0.275 0.725 35 H 0.065 0.935 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.826 4.357 -2.408 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.136 4.136 7 H 0.115 0.885 8 C 0.290 3.710 9 O -0.423 6.423 10 N -0.364 5.364 11 C 0.089 3.911 12 H 0.115 0.885 13 C -0.572 4.572 14 H 0.111 0.889 15 C -0.110 4.110 16 N -0.494 5.494 17 Si 0.696 3.304 18 H -0.192 1.192 19 H -0.180 1.180 20 H -0.205 1.205 21 C 0.383 3.617 22 F -0.163 7.163 23 F -0.178 7.178 24 F -0.175 7.175 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.514 4.834 -1.772 13.532 hybrid contribution -0.087 0.391 -0.188 0.443 sum -12.601 5.226 -1.960 13.781 Atomic orbital electron populations 1.21878 0.95191 1.01661 1.01286 1.21776 0.95449 0.99578 0.94961 0.91129 1.22436 0.97064 0.98906 0.97124 1.22497 0.98216 1.00641 0.94029 1.22181 0.95411 1.00441 0.95604 0.88484 1.20786 0.84174 0.80374 0.85704 1.90650 1.76685 1.47727 1.27216 1.47435 1.23376 1.37249 1.28383 1.20258 0.86087 0.96161 0.88548 0.88451 1.20724 1.06692 0.96658 1.33146 0.88925 1.24978 0.93764 0.99182 0.93091 1.69855 1.10180 1.36644 1.32681 0.86924 0.78195 0.84883 0.80357 1.19206 1.17971 1.20515 1.21714 0.73615 0.81538 0.84864 1.93106 1.50507 1.93815 1.78912 1.93140 1.66611 1.83202 1.74825 1.93061 1.86839 1.51252 1.86373 1.22133 0.99018 0.96224 0.97051 0.92626 0.92831 0.92989 0.91688 0.91365 0.90948 0.90610 0.76383 0.91467 0.91583 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.84 37.16 0.33 -0.98 16 2 C -0.10 -1.10 3.50 -89.50 -0.31 -1.41 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.25 6.36 -25.07 -0.16 -1.41 16 5 C -0.12 -1.50 6.26 -24.73 -0.15 -1.66 16 6 C -0.11 -1.66 3.25 -90.11 -0.29 -1.95 16 7 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 8 C 0.50 9.68 6.80 -10.99 -0.07 9.60 16 9 O -0.54 -12.30 14.03 5.55 0.08 -12.23 16 10 N -0.71 -14.22 4.85 -54.93 -0.27 -14.49 16 11 C 0.19 4.47 1.56 -69.08 -0.11 4.37 16 12 H 0.10 2.44 4.58 -51.93 -0.24 2.20 16 13 C -0.53 -13.65 8.52 -34.44 -0.29 -13.94 16 14 H 0.09 2.56 8.00 -52.48 -0.42 2.14 16 15 C 0.10 2.60 5.47 -17.82 -0.10 2.51 16 16 N -0.86 -23.64 13.96 55.43 0.77 -22.87 16 17 Si 0.87 20.22 27.58 -169.99 -4.69 15.54 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.25 -6.08 6.06 56.52 0.34 -5.73 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.44 9.95 2.83 37.16 0.11 10.05 16 22 F -0.18 -4.23 16.89 2.25 0.04 -4.19 16 23 F -0.20 -4.43 15.83 2.25 0.04 -4.39 16 24 F -0.19 -4.20 16.93 2.25 0.04 -4.17 16 25 C -0.11 -1.44 5.81 -25.61 -0.15 -1.59 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.64 7.86 -51.93 -0.41 0.24 16 31 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.40 7.13 8.58 -40.82 -0.35 6.78 16 34 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.07 0.84 7.67 -51.93 -0.40 0.44 16 36 H 0.08 1.31 6.90 -51.93 -0.36 0.96 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -28.53 306.49 -5.33 -33.86 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.74 Total: 4.74 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.21 Total: 3.58 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.51 Total: -37.36 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 9 Polarization: -12.86 SS G_CDS: 0.11 Total: -12.75 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.69 Total: 15.54 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.53 -5.33 -33.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.365 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds