Wall clock time and date at job start Tue Mar 31 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 110.01520 * 2 1 4 4 C 1.54265 * 110.02757 * 238.60625 * 2 1 3 5 5 C 1.54901 * 104.19356 * 217.10659 * 4 2 1 6 6 C 1.54887 * 102.74460 * 37.94569 * 5 4 2 7 7 H 1.09002 * 110.48515 * 80.87222 * 6 5 4 8 8 C 1.50700 * 110.48205 * 203.37920 * 6 5 4 9 9 O 1.21285 * 119.99925 * 118.54943 * 8 6 5 10 10 N 1.34773 * 120.00343 * 298.54645 * 8 6 5 11 11 C 1.46504 * 120.00506 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46923 * 325.00158 * 11 10 8 13 13 C 1.50696 * 109.47293 * 204.99973 * 11 10 8 14 14 H 1.08004 * 120.00001 * 274.87594 * 13 11 10 15 15 C 1.37878 * 120.00010 * 94.87065 * 13 11 10 16 16 N 1.31508 * 120.00239 * 174.99730 * 15 13 11 17 17 Si 1.86798 * 119.99809 * 355.00136 * 15 13 11 18 18 H 1.48504 * 109.47242 * 275.26741 * 17 15 13 19 19 H 1.48494 * 109.47503 * 35.26752 * 17 15 13 20 20 H 1.48504 * 109.47146 * 155.27052 * 17 15 13 21 21 C 1.52999 * 109.46724 * 84.99929 * 11 10 8 22 22 F 1.39901 * 109.46932 * 174.96764 * 21 11 10 23 23 F 1.39900 * 109.47395 * 294.96540 * 21 11 10 24 24 F 1.39898 * 109.47201 * 54.97038 * 21 11 10 25 25 C 1.53875 * 110.02903 * 121.44188 * 2 1 3 26 26 H 1.08999 * 109.47682 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47156 * 299.94032 * 1 2 3 28 28 H 1.09006 * 109.47208 * 59.93855 * 1 2 3 29 29 H 1.08995 * 110.48481 * 98.43300 * 4 2 1 30 30 H 1.09002 * 110.60594 * 335.83990 * 4 2 1 31 31 H 1.08996 * 110.75373 * 279.63294 * 5 4 2 32 32 H 1.08994 * 110.75134 * 156.26242 * 5 4 2 33 33 H 0.97005 * 119.99564 * 0.02562 * 10 8 6 34 34 H 0.97000 * 120.00690 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.03578 * 359.97438 * 25 2 1 36 36 H 1.08993 * 110.03093 * 238.56533 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7550 -1.2372 5 6 3.3136 -1.5006 -0.7197 6 6 2.8873 -1.9410 0.7027 7 1 2.2789 -2.8443 0.6560 8 6 4.0988 -2.1669 1.5701 9 8 4.2624 -1.4989 2.5691 10 7 5.0005 -3.1111 1.2357 11 6 6.1779 -3.3311 2.0792 12 1 6.5102 -2.3797 2.4945 13 6 7.2844 -3.9314 1.2507 14 1 7.3254 -4.9997 1.0973 15 6 8.2442 -3.1168 0.6884 16 7 9.2637 -3.6467 0.0487 17 14 8.0965 -1.2605 0.8355 18 1 7.2209 -0.7462 -0.2481 19 1 7.5081 -0.9135 2.1539 20 1 9.4432 -0.6458 0.7172 21 6 5.8178 -4.2869 3.2184 22 9 6.9678 -4.5873 3.9562 23 9 4.8727 -3.6817 4.0538 24 9 5.2835 -5.4655 2.6869 25 6 2.0570 -0.7541 1.2334 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5129 0.8905 28 1 -0.3634 0.5148 -0.8895 29 1 2.3296 -0.0528 -2.0254 30 1 1.3151 -1.4653 -1.5995 31 1 4.1709 -0.8289 -0.6754 32 1 3.5324 -2.3674 -1.3433 33 1 4.8697 -3.6452 0.4365 34 1 9.9392 -3.0737 -0.3466 35 1 1.2228 -1.1197 1.8322 36 1 2.6866 -0.0962 1.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:52 Heat of formation + Delta-G solvation = -240.357927 kcal Electronic energy + Delta-G solvation = -23236.811825 eV Core-core repulsion = 19303.769468 eV Total energy + Delta-G solvation = -3933.042357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -50.89288 -48.40434 -48.38160 -41.09727 -38.63312 -36.57247 -34.52982 -32.61506 -30.73301 -29.68791 -26.92358 -26.15368 -23.66383 -22.47874 -21.21019 -20.48391 -19.79172 -19.35201 -18.69238 -18.50598 -18.14342 -17.05901 -16.31528 -16.17737 -15.62251 -15.31477 -15.26784 -14.92174 -14.84787 -14.74974 -14.59003 -14.53473 -14.45274 -14.30168 -13.96170 -13.72574 -13.00565 -12.94121 -12.67622 -12.58752 -12.08139 -12.01103 -11.80042 -11.69392 -11.61456 -11.54132 -11.28746 -11.12726 -10.71278 -10.11183 -8.56485 -6.74285 1.22393 1.28308 1.36361 1.59180 2.02461 2.13772 2.17482 2.89427 3.29583 3.34155 3.46986 3.56362 3.70522 3.84903 4.18307 4.37817 4.40565 4.51427 4.55979 4.60006 4.72845 4.76345 4.94907 4.98409 5.03825 5.15851 5.18179 5.31548 5.36999 5.39013 5.50752 5.59546 5.86607 6.41778 6.72066 6.98304 7.31257 8.56134 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.006975 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.384650 B = 4013.138738 C = 4923.234119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.066 0.934 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.109 4.109 7 H 0.124 0.876 8 C 0.500 3.500 9 O -0.580 6.580 10 N -0.710 5.710 11 C 0.200 3.800 12 H 0.082 0.918 13 C -0.534 4.534 14 H 0.066 0.934 15 C 0.065 3.935 16 N -0.898 5.898 17 Si 0.918 3.082 18 H -0.254 1.254 19 H -0.267 1.267 20 H -0.271 1.271 21 C 0.440 3.560 22 F -0.187 7.187 23 F -0.194 7.194 24 F -0.186 7.186 25 C -0.107 4.107 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.413 0.587 34 H 0.280 0.720 35 H 0.074 0.926 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 5.021 -3.558 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.130 4.130 7 H 0.142 0.858 8 C 0.288 3.712 9 O -0.460 6.460 10 N -0.362 5.362 11 C 0.095 3.905 12 H 0.099 0.901 13 C -0.572 4.572 14 H 0.085 0.915 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.742 3.258 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.196 1.196 21 C 0.384 3.616 22 F -0.168 7.168 23 F -0.175 7.175 24 F -0.168 7.168 25 C -0.145 4.145 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.250 0.750 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.565 5.493 -2.948 15.843 hybrid contribution 0.511 0.139 0.235 0.579 sum -14.054 5.631 -2.714 15.382 Atomic orbital electron populations 1.21847 0.93409 1.02353 1.02020 1.21760 0.96885 0.99016 0.93857 0.91526 1.22428 0.96114 0.99183 0.96957 1.22537 0.98666 1.01083 0.93237 1.22266 0.93300 1.02012 0.95417 0.85848 1.21616 0.84919 0.78967 0.85675 1.90638 1.77630 1.48744 1.29036 1.47070 1.22700 1.37959 1.28473 1.19933 0.86803 0.95213 0.88525 0.90087 1.20647 1.07756 0.95457 1.33359 0.91538 1.25492 0.93438 1.02324 0.92888 1.69920 1.11142 1.38059 1.34177 0.86185 0.78609 0.81069 0.79909 1.17830 1.19274 1.19631 1.21619 0.73593 0.81696 0.84707 1.93096 1.50855 1.93862 1.79035 1.93144 1.66457 1.83218 1.74727 1.93071 1.86687 1.50782 1.86261 1.22145 0.98648 0.95606 0.98072 0.91939 0.92847 0.91598 0.90608 0.89332 0.93237 0.89153 0.74968 0.90983 0.90730 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.84 71.98 0.64 -1.44 16 2 C -0.10 -1.88 3.50 -10.07 -0.04 -1.91 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.11 -1.93 6.36 31.67 0.20 -1.73 16 5 C -0.12 -2.74 6.26 31.89 0.20 -2.54 16 6 C -0.11 -2.90 3.25 -10.47 -0.03 -2.94 16 7 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 8 C 0.50 18.70 6.80 87.66 0.60 19.29 16 9 O -0.58 -26.12 14.03 -3.04 -0.04 -26.17 16 10 N -0.71 -27.70 4.85 -446.10 -2.16 -29.86 16 11 C 0.20 9.28 1.56 44.24 0.07 9.35 16 12 H 0.08 4.07 4.58 -2.39 -0.01 4.06 16 13 C -0.53 -27.50 8.52 25.60 0.22 -27.28 16 14 H 0.07 3.74 8.00 -2.91 -0.02 3.71 16 15 C 0.07 3.41 5.47 84.66 0.46 3.87 16 16 N -0.90 -49.68 13.96 21.45 0.30 -49.38 16 17 Si 0.92 41.60 27.58 68.60 1.89 43.49 16 18 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -12.60 6.06 99.48 0.60 -12.00 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 C 0.44 19.83 2.83 71.98 0.20 20.04 16 22 F -0.19 -8.71 16.89 44.97 0.76 -7.95 16 23 F -0.19 -8.65 15.83 44.97 0.71 -7.94 16 24 F -0.19 -7.97 16.93 44.97 0.76 -7.20 16 25 C -0.11 -2.71 5.81 31.32 0.18 -2.53 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.25 7.86 -2.39 -0.02 1.23 16 31 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 14.15 8.58 -92.70 -0.80 13.36 16 34 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.07 1.73 7.67 -2.39 -0.02 1.72 16 36 H 0.05 1.66 6.90 -2.39 -0.02 1.65 16 Total: -1.00 -61.15 306.49 5.13 -56.02 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.21 Total: 16.81 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 2.70 Total: 12.19 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.86 Total: -79.25 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.04 Total: -26.17 kcal Atomic # 9 Polarization: -25.33 SS G_CDS: 2.23 Total: -23.10 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.89 Total: 43.49 kcal Total: -61.15 5.13 -56.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.333 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds