Wall clock time and date at job start Tue Mar 31 2020 01:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.66832 * 2 1 4 4 C 1.54886 * 110.75475 * 236.76945 * 2 1 3 5 5 C 1.54269 * 104.19386 * 203.55438 * 4 2 1 6 6 C 1.53869 * 106.59909 * 23.61174 * 5 4 2 7 7 H 1.09005 * 110.03396 * 240.66772 * 6 5 4 8 8 C 1.50703 * 110.03405 * 119.28356 * 6 5 4 9 9 O 1.21279 * 120.00024 * 242.08916 * 8 6 5 10 10 N 1.34778 * 119.99935 * 62.09267 * 8 6 5 11 11 C 1.46499 * 119.99771 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47391 * 34.99730 * 11 10 8 13 13 C 1.50701 * 109.46992 * 154.99740 * 11 10 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 11 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 11 10 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.53002 * 109.46799 * 274.99826 * 11 10 8 22 22 F 1.39895 * 109.47052 * 299.99663 * 21 11 10 23 23 F 1.39889 * 109.47380 * 60.00236 * 21 11 10 24 24 F 1.39906 * 109.46680 * 180.02562 * 21 11 10 25 25 C 1.54271 * 106.64122 * 359.97363 * 6 5 4 26 26 H 1.09002 * 109.46611 * 181.78151 * 1 2 3 27 27 H 1.08996 * 109.47236 * 301.77609 * 1 2 3 28 28 H 1.08997 * 109.47192 * 61.78277 * 1 2 3 29 29 H 1.09007 * 110.48982 * 84.87891 * 4 2 1 30 30 H 1.08998 * 110.48872 * 322.23543 * 4 2 1 31 31 H 1.09003 * 110.03585 * 264.32220 * 5 4 2 32 32 H 1.09000 * 110.02923 * 142.89286 * 5 4 2 33 33 H 0.96998 * 119.99599 * 359.97438 * 10 8 6 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 35 35 H 1.08997 * 110.48339 * 95.09129 * 25 6 5 36 36 H 1.08994 * 110.48681 * 217.73935 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0789 -0.7937 -1.2115 5 6 3.4950 -1.2212 -0.7735 6 6 3.4976 -1.2223 0.7652 7 1 4.2365 -0.5128 1.1379 8 6 3.8045 -2.6050 1.2800 9 8 2.9862 -3.1979 1.9506 10 7 4.9885 -3.1826 0.9952 11 6 5.2866 -4.5270 1.4952 12 1 4.3741 -5.1231 1.5013 13 6 6.3078 -5.1807 0.6003 14 1 6.6962 -4.6480 -0.2551 15 6 6.7471 -6.4587 0.8742 16 7 6.2745 -7.1073 1.9161 17 14 8.0134 -7.2687 -0.2347 18 1 8.3823 -6.3353 -1.3292 19 1 9.2234 -7.6041 0.5582 20 1 7.4415 -8.5106 -0.8144 21 6 5.8422 -4.4305 2.9176 22 9 7.0134 -3.6655 2.9098 23 9 4.8943 -3.8236 3.7483 24 9 6.1275 -5.7143 3.3948 25 6 2.0835 -0.7948 1.2097 26 1 -0.3632 -1.0272 0.0319 27 1 -0.3633 0.5411 0.8736 28 1 -0.3633 0.4859 -0.9055 29 1 2.1289 -0.1562 -2.0943 30 1 1.4593 -1.6690 -1.4065 31 1 4.2321 -0.5107 -1.1477 32 1 3.7157 -2.2208 -1.1479 33 1 5.6428 -2.7085 0.4586 34 1 6.5832 -8.0065 2.1085 35 1 1.4645 -1.6702 1.4062 36 1 2.1373 -0.1584 2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:55 Heat of formation + Delta-G solvation = -199.969753 kcal Electronic energy + Delta-G solvation = -23236.763090 eV Core-core repulsion = 19305.472096 eV Total energy + Delta-G solvation = -3931.290994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.34411 -46.00068 -45.60606 -39.66029 -37.26423 -34.62712 -32.63812 -31.42532 -28.88676 -28.20174 -25.20578 -24.52266 -22.20668 -20.79077 -19.92191 -19.30514 -17.42998 -16.84413 -16.67543 -16.35677 -16.05080 -15.53437 -14.94432 -14.56229 -14.08437 -13.55717 -13.36523 -13.15707 -12.97966 -12.89497 -12.55642 -12.40162 -12.29354 -12.03734 -11.95870 -11.81088 -11.33836 -11.26888 -11.09314 -10.88760 -10.86659 -10.78982 -10.59920 -10.50462 -10.47654 -10.35238 -9.64444 -9.07674 -8.73318 -8.23531 -6.24296 -4.48111 3.16720 3.23860 3.27009 3.27922 3.84534 4.20701 4.54346 4.59487 4.65727 4.86643 4.92784 5.24863 5.33148 5.49114 5.55220 5.62680 5.64997 5.65682 5.81398 5.85785 5.88042 5.98029 6.04534 6.08159 6.15513 6.23858 6.33143 6.36520 6.56912 6.95501 7.21042 7.47702 7.62862 8.36140 8.50186 8.93358 9.20061 10.67408 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.005486 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.785071 B = 5102.926003 C = 5744.455234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.114 4.114 7 H 0.093 0.907 8 C 0.510 3.490 9 O -0.537 6.537 10 N -0.712 5.712 11 C 0.244 3.756 12 H 0.084 0.916 13 C -0.551 4.551 14 H 0.077 0.923 15 C 0.064 3.936 16 N -0.840 5.840 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.417 3.583 22 F -0.210 7.210 23 F -0.218 7.218 24 F -0.137 7.137 25 C -0.105 4.105 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.267 0.733 35 H 0.088 0.912 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 11.475 -4.843 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.135 4.135 7 H 0.111 0.889 8 C 0.296 3.704 9 O -0.414 6.414 10 N -0.361 5.361 11 C 0.138 3.862 12 H 0.102 0.898 13 C -0.588 4.588 14 H 0.096 0.904 15 C -0.145 4.145 16 N -0.473 5.473 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.360 3.640 22 F -0.192 7.192 23 F -0.200 7.200 24 F -0.118 7.118 25 C -0.143 4.143 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.372 10.829 -4.206 12.799 hybrid contribution 1.274 -0.218 -0.360 1.342 sum -4.098 10.611 -4.566 12.257 Atomic orbital electron populations 1.21743 0.95051 1.02023 1.01207 1.22129 0.95414 0.98906 0.95241 0.90891 1.22415 0.95952 0.99778 0.97426 1.22140 0.97711 1.02507 0.93147 1.21945 0.99743 0.94980 0.96875 0.88854 1.20545 0.82053 0.87793 0.80042 1.90667 1.47236 1.64762 1.38697 1.46084 1.17204 1.18749 1.54088 1.19709 0.99285 0.80714 0.86486 0.89844 1.20918 1.25313 1.00165 1.12391 0.90442 1.25093 0.96976 0.97139 0.95246 1.70414 1.41205 1.11908 1.23775 0.86164 0.80400 0.79204 0.80090 1.19402 1.20572 1.20563 1.23154 0.74994 0.74089 0.91726 1.92983 1.51809 1.77152 1.97233 1.93065 1.65827 1.84639 1.76455 1.93405 1.93242 1.35370 1.89811 1.22388 0.94386 1.00554 0.96982 0.92422 0.92792 0.92934 0.91755 0.91386 0.91156 0.90803 0.76828 0.92189 0.89382 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.28 37.16 0.34 -1.04 16 2 C -0.10 -1.05 3.48 -88.59 -0.31 -1.36 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.28 6.28 -25.07 -0.16 -1.44 16 5 C -0.12 -1.42 6.38 -25.61 -0.16 -1.58 16 6 C -0.11 -1.63 3.29 -90.65 -0.30 -1.93 16 7 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 8 C 0.51 9.97 6.46 -10.98 -0.07 9.90 16 9 O -0.54 -12.58 13.98 5.56 0.08 -12.51 16 10 N -0.71 -14.49 4.85 -54.93 -0.27 -14.76 16 11 C 0.24 6.07 2.21 -69.08 -0.15 5.92 16 12 H 0.08 2.34 7.58 -51.93 -0.39 1.94 16 13 C -0.55 -14.02 8.47 -34.44 -0.29 -14.31 16 14 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 15 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.11 9.50 55.43 0.53 -22.58 16 17 Si 0.91 20.06 29.54 -169.99 -5.02 15.04 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.42 10.79 2.81 37.16 0.10 10.89 16 22 F -0.21 -5.22 16.94 2.25 0.04 -5.18 16 23 F -0.22 -5.62 15.68 2.25 0.04 -5.58 16 24 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 25 C -0.11 -1.42 5.61 -25.03 -0.14 -1.56 16 26 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.00 7.61 -51.93 -0.39 0.60 16 33 H 0.40 7.00 8.52 -40.82 -0.35 6.66 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.09 1.41 6.79 -51.93 -0.35 1.05 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -29.61 303.90 -6.06 -35.66 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.83 Total: 4.07 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.23 Total: 5.07 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.26 Total: -37.34 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 0.10 Total: -14.57 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.61 -6.06 -35.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.307 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds