Wall clock time and date at job start Tue Mar 31 2020 01:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.66832 * 2 1 4 4 C 1.54886 * 110.75475 * 236.76945 * 2 1 3 5 5 C 1.54269 * 104.19386 * 203.55438 * 4 2 1 6 6 C 1.53869 * 106.59909 * 23.61174 * 5 4 2 7 7 H 1.09005 * 110.03396 * 240.66772 * 6 5 4 8 8 C 1.50703 * 110.03405 * 119.28356 * 6 5 4 9 9 O 1.21279 * 120.00024 * 242.08916 * 8 6 5 10 10 N 1.34778 * 119.99935 * 62.09267 * 8 6 5 11 11 C 1.46499 * 119.99771 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47391 * 34.99730 * 11 10 8 13 13 C 1.50701 * 109.46992 * 154.99740 * 11 10 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 11 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 11 10 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.53002 * 109.46799 * 274.99826 * 11 10 8 22 22 F 1.39895 * 109.47052 * 299.99663 * 21 11 10 23 23 F 1.39889 * 109.47380 * 60.00236 * 21 11 10 24 24 F 1.39906 * 109.46680 * 180.02562 * 21 11 10 25 25 C 1.54271 * 106.64122 * 359.97363 * 6 5 4 26 26 H 1.09002 * 109.46611 * 181.78151 * 1 2 3 27 27 H 1.08996 * 109.47236 * 301.77609 * 1 2 3 28 28 H 1.08997 * 109.47192 * 61.78277 * 1 2 3 29 29 H 1.09007 * 110.48982 * 84.87891 * 4 2 1 30 30 H 1.08998 * 110.48872 * 322.23543 * 4 2 1 31 31 H 1.09003 * 110.03585 * 264.32220 * 5 4 2 32 32 H 1.09000 * 110.02923 * 142.89286 * 5 4 2 33 33 H 0.96998 * 119.99599 * 359.97438 * 10 8 6 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 35 35 H 1.08997 * 110.48339 * 95.09129 * 25 6 5 36 36 H 1.08994 * 110.48681 * 217.73935 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0199 0.0000 4 6 2.0789 -0.7937 -1.2115 5 6 3.4950 -1.2212 -0.7735 6 6 3.4976 -1.2223 0.7652 7 1 4.2365 -0.5128 1.1379 8 6 3.8045 -2.6050 1.2800 9 8 2.9862 -3.1979 1.9506 10 7 4.9885 -3.1826 0.9952 11 6 5.2866 -4.5270 1.4952 12 1 4.3741 -5.1231 1.5013 13 6 6.3078 -5.1807 0.6003 14 1 6.6962 -4.6480 -0.2551 15 6 6.7471 -6.4587 0.8742 16 7 6.2745 -7.1073 1.9161 17 14 8.0134 -7.2687 -0.2347 18 1 8.3823 -6.3353 -1.3292 19 1 9.2234 -7.6041 0.5582 20 1 7.4415 -8.5106 -0.8144 21 6 5.8422 -4.4305 2.9176 22 9 7.0134 -3.6655 2.9098 23 9 4.8943 -3.8236 3.7483 24 9 6.1275 -5.7143 3.3948 25 6 2.0835 -0.7948 1.2097 26 1 -0.3632 -1.0272 0.0319 27 1 -0.3633 0.5411 0.8736 28 1 -0.3633 0.4859 -0.9055 29 1 2.1289 -0.1562 -2.0943 30 1 1.4593 -1.6690 -1.4065 31 1 4.2321 -0.5107 -1.1477 32 1 3.7157 -2.2208 -1.1479 33 1 5.6428 -2.7085 0.4586 34 1 6.5832 -8.0065 2.1085 35 1 1.4645 -1.6702 1.4062 36 1 2.1373 -0.1584 2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:55 Heat of formation + Delta-G solvation = -217.821823 kcal Electronic energy + Delta-G solvation = -23237.537214 eV Core-core repulsion = 19305.472096 eV Total energy + Delta-G solvation = -3932.065118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.44558 -48.08249 -47.75264 -41.08995 -38.48058 -36.47299 -34.50049 -32.52479 -30.28520 -29.60209 -26.67142 -26.14325 -23.81741 -22.39739 -20.89992 -20.75765 -19.22417 -18.88647 -18.69676 -18.15060 -17.49584 -16.98601 -16.75501 -16.10664 -15.36456 -15.05779 -15.00421 -14.58345 -14.51187 -14.49111 -14.46556 -14.31922 -14.05289 -13.92097 -13.83328 -13.11761 -12.99900 -12.73966 -12.68373 -12.30856 -12.25118 -12.14438 -11.78692 -11.63607 -11.56995 -11.37672 -11.33837 -10.71253 -10.66789 -10.04532 -8.22731 -6.53723 1.45042 1.46294 1.59487 1.69624 2.21982 2.39663 2.53019 2.92653 3.54988 3.61454 3.75195 3.82631 3.86967 4.13707 4.26831 4.37560 4.52151 4.56710 4.67495 4.75850 4.77225 4.91391 4.92246 5.08891 5.15991 5.20837 5.32383 5.37476 5.40364 5.44039 5.55089 5.62971 5.65342 6.51755 6.74816 7.16063 7.39042 8.70360 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.005486 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.785071 B = 5102.926003 C = 5744.455234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.097 0.903 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.107 4.107 7 H 0.119 0.881 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.706 5.706 11 C 0.250 3.750 12 H 0.043 0.957 13 C -0.559 4.559 14 H 0.093 0.907 15 C 0.013 3.987 16 N -0.876 5.876 17 Si 0.984 3.016 18 H -0.254 1.254 19 H -0.281 1.281 20 H -0.278 1.278 21 C 0.413 3.587 22 F -0.202 7.202 23 F -0.220 7.220 24 F -0.151 7.151 25 C -0.109 4.109 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.413 0.587 34 H 0.268 0.732 35 H 0.054 0.946 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 13.565 -6.825 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.115 0.885 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.128 4.128 7 H 0.137 0.863 8 C 0.292 3.708 9 O -0.462 6.462 10 N -0.356 5.356 11 C 0.143 3.857 12 H 0.060 0.940 13 C -0.596 4.596 14 H 0.111 0.889 15 C -0.192 4.192 16 N -0.511 5.511 17 Si 0.808 3.192 18 H -0.177 1.177 19 H -0.207 1.207 20 H -0.203 1.203 21 C 0.357 3.643 22 F -0.184 7.184 23 F -0.202 7.202 24 F -0.133 7.133 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.250 0.750 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.499 12.961 -6.214 15.061 hybrid contribution 0.953 -0.859 0.317 1.321 sum -3.546 12.102 -5.897 13.922 Atomic orbital electron populations 1.21745 0.94500 1.01369 1.02417 1.22123 0.95883 0.99430 0.93304 0.88520 1.22436 0.94771 0.99726 0.98530 1.22179 0.99503 1.02467 0.91023 1.22051 1.00772 0.91363 0.98584 0.86322 1.21599 0.80856 0.89475 0.78905 1.90648 1.48449 1.66406 1.40716 1.45972 1.18162 1.17279 1.54190 1.19295 0.97470 0.82655 0.86291 0.93951 1.21261 1.25109 1.00511 1.12705 0.88897 1.26035 0.98898 0.97776 0.96495 1.70546 1.42627 1.12264 1.25621 0.85096 0.77458 0.78277 0.78399 1.17700 1.20715 1.20346 1.23332 0.75218 0.73624 0.92136 1.92982 1.51369 1.76846 1.97225 1.93055 1.65954 1.84586 1.76613 1.93376 1.93372 1.36464 1.90045 1.22411 0.93585 0.99862 0.98876 0.94025 0.92256 0.91097 0.89064 0.92963 0.87988 0.92667 0.75015 0.92206 0.92691 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.28 71.98 0.67 -1.83 16 2 C -0.09 -1.67 3.48 -9.48 -0.03 -1.70 16 3 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.12 -2.23 6.28 31.67 0.20 -2.03 16 5 C -0.11 -2.46 6.38 31.32 0.20 -2.26 16 6 C -0.11 -2.87 3.29 -10.81 -0.04 -2.91 16 7 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 8 C 0.50 19.82 6.46 87.66 0.57 20.38 16 9 O -0.58 -28.41 13.98 -3.03 -0.04 -28.45 16 10 N -0.71 -28.66 4.85 -446.09 -2.16 -30.82 16 11 C 0.25 12.72 2.21 44.25 0.10 12.82 16 12 H 0.04 2.51 7.58 -2.39 -0.02 2.49 16 13 C -0.56 -28.33 8.47 25.60 0.22 -28.11 16 14 H 0.09 4.31 7.74 -2.91 -0.02 4.29 16 15 C 0.01 0.67 5.20 84.66 0.44 1.11 16 16 N -0.88 -49.13 9.50 21.45 0.20 -48.93 16 17 Si 0.98 40.56 29.54 68.60 2.03 42.59 16 18 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.41 21.79 2.81 71.98 0.20 21.99 16 22 F -0.20 -10.00 16.94 44.97 0.76 -9.24 16 23 F -0.22 -11.62 15.68 44.97 0.70 -10.91 16 24 F -0.15 -8.69 12.91 44.97 0.58 -8.11 16 25 C -0.11 -2.85 5.61 31.70 0.18 -2.67 16 26 H 0.04 0.85 8.13 -2.39 -0.02 0.83 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.05 1.16 8.05 -2.39 -0.02 1.14 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.41 7.61 -2.39 -0.02 1.39 16 33 H 0.41 13.99 8.52 -92.71 -0.79 13.20 16 34 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.05 1.81 6.79 -2.39 -0.02 1.79 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -65.57 303.90 5.08 -60.49 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.31 Total: 18.60 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 2.70 Total: 14.79 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.96 Total: -79.75 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.04 Total: -28.45 kcal Atomic # 9 Polarization: -30.32 SS G_CDS: 2.05 Total: -28.27 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -65.57 5.08 -60.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.331 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds