Wall clock time and date at job start Tue Mar 31 2020 00:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47074 * 2 1 4 4 C 1.50698 * 112.84771 * 303.36776 * 3 2 1 5 5 O 1.21284 * 119.99618 * 111.92121 * 4 3 2 6 6 N 1.34779 * 120.00545 * 291.91807 * 4 3 2 7 7 C 1.46493 * 120.00010 * 185.05774 * 6 4 3 8 8 H 1.09002 * 109.47448 * 324.99869 * 7 6 4 9 9 C 1.50702 * 109.46838 * 204.99827 * 7 6 4 10 10 H 1.07999 * 120.00242 * 268.15686 * 9 7 6 11 11 C 1.37875 * 119.99937 * 88.16031 * 9 7 6 12 12 N 1.31515 * 120.00495 * 186.69652 * 11 9 7 13 13 Si 1.86801 * 120.00133 * 6.69357 * 11 9 7 14 14 H 1.48503 * 109.47307 * 84.52532 * 13 11 9 15 15 H 1.48496 * 109.47550 * 204.52689 * 13 11 9 16 16 H 1.48501 * 109.47142 * 324.53028 * 13 11 9 17 17 C 1.53006 * 109.47221 * 85.00380 * 7 6 4 18 18 F 1.39901 * 109.47041 * 182.11359 * 17 7 6 19 19 F 1.39901 * 109.46730 * 302.10806 * 17 7 6 20 20 F 1.39896 * 109.47146 * 62.11295 * 17 7 6 21 21 C 1.53780 * 113.69158 * 74.63897 * 3 2 1 22 22 C 1.53777 * 87.08276 * 89.12818 * 21 3 2 23 23 C 1.53779 * 113.61557 * 172.17335 * 3 2 1 24 24 H 1.09005 * 109.46887 * 305.56438 * 1 2 3 25 25 H 1.08999 * 109.47567 * 65.56165 * 1 2 3 26 26 H 1.08994 * 109.47108 * 185.56529 * 1 2 3 27 27 H 1.09006 * 109.47065 * 240.00445 * 2 1 3 28 28 H 1.08993 * 109.47324 * 119.99745 * 2 1 3 29 29 H 0.96999 * 119.99517 * 5.05935 * 6 4 3 30 30 H 0.97000 * 120.00450 * 180.02562 * 12 11 9 31 31 H 1.08998 * 113.61401 * 203.68237 * 21 3 2 32 32 H 1.09006 * 113.61213 * 334.57561 * 21 3 2 33 33 H 1.09006 * 113.61133 * 270.88387 * 22 21 3 34 34 H 1.09000 * 113.69480 * 139.99282 * 22 21 3 35 35 H 1.09001 * 113.61232 * 25.34949 * 23 3 2 36 36 H 1.09001 * 113.61465 * 156.16659 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5149 2.2488 -1.1598 5 8 0.7357 3.1573 -0.9634 6 7 1.9111 1.9605 -2.4154 7 6 1.4890 2.8118 -3.5303 8 1 0.4792 3.1784 -3.3456 9 6 1.5073 2.0123 -4.8077 10 1 2.3933 2.0013 -5.4252 11 6 0.3930 1.2950 -5.1880 12 7 0.4504 0.4941 -6.2296 13 14 -1.1983 1.4605 -4.2238 14 1 -1.9540 2.6409 -4.7144 15 1 -2.0184 0.2363 -4.4080 16 1 -0.8877 1.6359 -2.7822 17 6 2.4470 3.9980 -3.6574 18 9 2.0165 4.8365 -4.6912 19 9 2.4664 4.7126 -2.4548 20 9 3.7341 3.5295 -3.9424 21 6 1.8942 2.1495 1.3579 22 6 3.2882 1.6006 1.7046 23 6 3.5614 1.5581 0.1919 24 1 -0.3633 0.5977 0.8360 25 1 -0.3634 0.4251 -0.9356 26 1 -0.3633 -1.0228 0.0997 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 2.4756 1.1892 -2.5807 30 1 -0.3337 -0.0103 -6.4974 31 1 1.8591 3.2363 1.2828 32 1 1.0972 1.7412 1.9794 33 1 3.2660 0.6161 2.1721 34 1 3.9172 2.3102 2.2421 35 1 4.1103 0.6724 -0.1280 36 1 3.9824 2.4826 -0.2033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928806112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:30 Heat of formation + Delta-G solvation = -192.796890 kcal Electronic energy + Delta-G solvation = -23868.121557 eV Core-core repulsion = 19937.141602 eV Total energy + Delta-G solvation = -3930.979955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.09236 -46.61463 -46.57579 -40.32031 -37.46481 -34.71637 -32.59993 -32.21879 -29.31681 -26.01328 -25.45384 -24.97383 -22.79493 -21.56553 -20.31553 -18.70243 -17.78110 -17.54182 -16.95631 -16.55142 -16.32701 -15.44866 -15.25582 -14.57723 -14.06170 -13.89979 -13.66122 -13.49455 -13.24905 -13.04350 -12.85186 -12.78646 -12.66083 -12.53806 -12.44259 -12.23441 -11.86242 -11.56777 -11.34720 -11.20470 -11.03986 -10.86975 -10.61251 -10.23910 -10.18797 -10.05658 -9.81793 -9.11140 -8.89892 -8.35900 -6.52991 -4.67159 3.10818 3.17090 3.23443 3.30306 3.71448 3.94013 4.10877 4.55209 4.62519 4.80898 4.85953 4.88837 5.11988 5.16202 5.24601 5.37241 5.42197 5.53079 5.66566 5.73677 5.89568 5.92289 5.94881 6.00150 6.07142 6.20918 6.35187 6.36377 6.46612 6.53759 6.91004 7.21027 7.86245 8.37876 8.52481 8.92272 9.03392 10.55356 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.009168 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.673990 B = 3053.235875 C = 4050.737904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.108 4.108 4 C 0.520 3.480 5 O -0.546 6.546 6 N -0.711 5.711 7 C 0.204 3.796 8 H 0.088 0.912 9 C -0.539 4.539 10 H 0.094 0.906 11 C 0.101 3.899 12 N -0.861 5.861 13 Si 0.864 3.136 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.248 1.248 17 C 0.439 3.561 18 F -0.184 7.184 19 F -0.198 7.198 20 F -0.190 7.190 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.125 4.125 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.400 0.600 30 H 0.275 0.725 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -1.163 11.988 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.130 4.130 3 C -0.111 4.111 4 C 0.306 3.694 5 O -0.424 6.424 6 N -0.362 5.362 7 C 0.100 3.900 8 H 0.106 0.894 9 C -0.577 4.577 10 H 0.111 0.889 11 C -0.109 4.109 12 N -0.493 5.493 13 Si 0.689 3.311 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.172 1.172 17 C 0.384 3.616 18 F -0.166 7.166 19 F -0.179 7.179 20 F -0.172 7.172 21 C -0.149 4.149 22 C -0.178 4.178 23 C -0.163 4.163 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.083 -0.612 11.975 12.381 hybrid contribution -0.422 -0.131 0.144 0.465 sum 2.661 -0.743 12.119 12.430 Atomic orbital electron populations 1.21813 0.95375 1.01384 1.02837 1.21255 0.96406 0.92776 1.02598 1.22230 0.97284 0.96677 0.94957 1.20495 0.80739 0.83959 0.84222 1.90629 1.34470 1.32098 1.85154 1.47381 1.52566 1.30532 1.05742 1.19975 0.93367 0.87288 0.89361 0.89431 1.20746 1.03122 1.30388 1.03406 0.88851 1.24950 0.98703 0.92945 0.94275 1.69866 1.30774 1.23937 1.24770 0.87011 0.83207 0.78575 0.82345 1.19241 1.20651 1.17223 1.21658 0.81558 0.85818 0.72589 1.93101 1.89752 1.73783 1.59929 1.93127 1.96690 1.81059 1.47046 1.93074 1.41984 1.88582 1.93516 1.22801 0.96867 1.00968 0.94220 1.22824 0.97516 1.01266 0.96189 1.22933 0.93943 1.02854 0.96533 0.92501 0.92185 0.92630 0.90963 0.91133 0.76438 0.91519 0.89297 0.91232 0.90139 0.91388 0.90702 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.51 37.16 0.35 -1.90 16 2 C -0.09 -1.21 5.30 -26.73 -0.14 -1.35 16 3 C -0.11 -1.60 0.80 -154.85 -0.12 -1.73 16 4 C 0.52 10.14 5.05 -10.99 -0.06 10.08 16 5 O -0.55 -12.48 15.05 5.55 0.08 -12.40 16 6 N -0.71 -14.41 5.00 -54.93 -0.27 -14.69 16 7 C 0.20 4.72 1.56 -69.08 -0.11 4.62 16 8 H 0.09 2.17 5.01 -51.93 -0.26 1.91 16 9 C -0.54 -13.81 8.64 -34.44 -0.30 -14.10 16 10 H 0.09 2.59 7.76 -52.49 -0.41 2.18 16 11 C 0.10 2.64 5.47 -17.82 -0.10 2.54 16 12 N -0.86 -23.63 13.96 55.43 0.77 -22.86 16 13 Si 0.86 20.17 27.00 -169.99 -4.59 15.58 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.25 -5.83 6.40 56.52 0.36 -5.47 16 17 C 0.44 9.85 2.82 37.16 0.10 9.95 16 18 F -0.18 -4.20 17.08 2.25 0.04 -4.16 16 19 F -0.20 -4.36 15.82 2.25 0.04 -4.32 16 20 F -0.19 -4.11 16.71 2.25 0.04 -4.08 16 21 C -0.11 -1.49 6.72 -25.92 -0.17 -1.67 16 22 C -0.14 -1.52 7.73 -25.92 -0.20 -1.72 16 23 C -0.12 -1.58 7.22 -25.92 -0.19 -1.76 16 24 H 0.06 0.79 7.26 -51.93 -0.38 0.41 16 25 H 0.06 1.06 7.04 -51.93 -0.37 0.69 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.75 7.31 -51.93 -0.38 0.37 16 29 H 0.40 7.42 8.60 -40.82 -0.35 7.07 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.09 1.35 7.76 -51.93 -0.40 0.94 16 32 H 0.07 0.87 7.35 -51.93 -0.38 0.49 16 33 H 0.08 0.75 7.60 -51.93 -0.39 0.35 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -28.60 306.69 -4.81 -33.41 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.60 Total: 5.94 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.93 Total: 2.96 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.50 Total: -37.55 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 9 Polarization: -12.67 SS G_CDS: 0.11 Total: -12.56 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.59 Total: 15.58 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.60 -4.81 -33.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.391 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds