Wall clock time and date at job start Tue Mar 31 2020 00:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47074 * 2 1 4 4 C 1.50698 * 112.84771 * 303.36776 * 3 2 1 5 5 O 1.21284 * 119.99618 * 111.92121 * 4 3 2 6 6 N 1.34779 * 120.00545 * 291.91807 * 4 3 2 7 7 C 1.46493 * 120.00010 * 185.05774 * 6 4 3 8 8 H 1.09002 * 109.47448 * 324.99869 * 7 6 4 9 9 C 1.50702 * 109.46838 * 204.99827 * 7 6 4 10 10 H 1.07999 * 120.00242 * 268.15686 * 9 7 6 11 11 C 1.37875 * 119.99937 * 88.16031 * 9 7 6 12 12 N 1.31515 * 120.00495 * 186.69652 * 11 9 7 13 13 Si 1.86801 * 120.00133 * 6.69357 * 11 9 7 14 14 H 1.48503 * 109.47307 * 84.52532 * 13 11 9 15 15 H 1.48496 * 109.47550 * 204.52689 * 13 11 9 16 16 H 1.48501 * 109.47142 * 324.53028 * 13 11 9 17 17 C 1.53006 * 109.47221 * 85.00380 * 7 6 4 18 18 F 1.39901 * 109.47041 * 182.11359 * 17 7 6 19 19 F 1.39901 * 109.46730 * 302.10806 * 17 7 6 20 20 F 1.39896 * 109.47146 * 62.11295 * 17 7 6 21 21 C 1.53780 * 113.69158 * 74.63897 * 3 2 1 22 22 C 1.53777 * 87.08276 * 89.12818 * 21 3 2 23 23 C 1.53779 * 113.61557 * 172.17335 * 3 2 1 24 24 H 1.09005 * 109.46887 * 305.56438 * 1 2 3 25 25 H 1.08999 * 109.47567 * 65.56165 * 1 2 3 26 26 H 1.08994 * 109.47108 * 185.56529 * 1 2 3 27 27 H 1.09006 * 109.47065 * 240.00445 * 2 1 3 28 28 H 1.08993 * 109.47324 * 119.99745 * 2 1 3 29 29 H 0.96999 * 119.99517 * 5.05935 * 6 4 3 30 30 H 0.97000 * 120.00450 * 180.02562 * 12 11 9 31 31 H 1.08998 * 113.61401 * 203.68237 * 21 3 2 32 32 H 1.09006 * 113.61213 * 334.57561 * 21 3 2 33 33 H 1.09006 * 113.61133 * 270.88387 * 22 21 3 34 34 H 1.09000 * 113.69480 * 139.99282 * 22 21 3 35 35 H 1.09001 * 113.61232 * 25.34949 * 23 3 2 36 36 H 1.09001 * 113.61465 * 156.16659 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5149 2.2488 -1.1598 5 8 0.7357 3.1573 -0.9634 6 7 1.9111 1.9605 -2.4154 7 6 1.4890 2.8118 -3.5303 8 1 0.4792 3.1784 -3.3456 9 6 1.5073 2.0123 -4.8077 10 1 2.3933 2.0013 -5.4252 11 6 0.3930 1.2950 -5.1880 12 7 0.4504 0.4941 -6.2296 13 14 -1.1983 1.4605 -4.2238 14 1 -1.9540 2.6409 -4.7144 15 1 -2.0184 0.2363 -4.4080 16 1 -0.8877 1.6359 -2.7822 17 6 2.4470 3.9980 -3.6574 18 9 2.0165 4.8365 -4.6912 19 9 2.4664 4.7126 -2.4548 20 9 3.7341 3.5295 -3.9424 21 6 1.8942 2.1495 1.3579 22 6 3.2882 1.6006 1.7046 23 6 3.5614 1.5581 0.1919 24 1 -0.3633 0.5977 0.8360 25 1 -0.3634 0.4251 -0.9356 26 1 -0.3633 -1.0228 0.0997 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 2.4756 1.1892 -2.5807 30 1 -0.3337 -0.0103 -6.4974 31 1 1.8591 3.2363 1.2828 32 1 1.0972 1.7412 1.9794 33 1 3.2660 0.6161 2.1721 34 1 3.9172 2.3102 2.2421 35 1 4.1103 0.6724 -0.1280 36 1 3.9824 2.4826 -0.2033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928806112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:30 Heat of formation + Delta-G solvation = -210.613603 kcal Electronic energy + Delta-G solvation = -23868.894148 eV Core-core repulsion = 19937.141602 eV Total energy + Delta-G solvation = -3931.752546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.93451 -48.45190 -48.41532 -41.62357 -38.88085 -36.53837 -34.48989 -33.34420 -31.10111 -27.23290 -26.91300 -26.48816 -24.01914 -23.15486 -21.82664 -20.38585 -19.40330 -19.26498 -18.68638 -18.42880 -17.79172 -17.10233 -16.42436 -16.21464 -15.53084 -15.40585 -15.29139 -15.00962 -14.96812 -14.86976 -14.65955 -14.62205 -14.53642 -14.02255 -13.73275 -13.56297 -13.29643 -13.07038 -12.68748 -12.58516 -12.40168 -12.17507 -12.03154 -11.86345 -11.85847 -11.23865 -11.10278 -11.02410 -10.51655 -10.09545 -8.57310 -6.74242 1.21943 1.28649 1.40459 1.62127 2.01507 2.14721 2.19644 2.93174 3.22708 3.30328 3.44443 3.47581 3.61515 3.83188 3.91298 4.04894 4.34151 4.40749 4.47422 4.59430 4.81784 4.85869 4.88274 4.93617 5.02293 5.03098 5.13381 5.15967 5.33195 5.36351 5.49678 5.55826 5.85638 6.41459 6.75124 6.98377 7.34681 8.54992 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.009168 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.673990 B = 3053.235875 C = 4050.737904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 C -0.113 4.113 4 C 0.516 3.484 5 O -0.583 6.583 6 N -0.709 5.709 7 C 0.210 3.790 8 H 0.073 0.927 9 C -0.540 4.540 10 H 0.067 0.933 11 C 0.068 3.932 12 N -0.896 5.896 13 Si 0.914 3.086 14 H -0.270 1.270 15 H -0.270 1.270 16 H -0.254 1.254 17 C 0.442 3.558 18 F -0.187 7.187 19 F -0.194 7.194 20 F -0.184 7.184 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.124 4.124 24 H 0.058 0.942 25 H 0.019 0.981 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.410 0.590 30 H 0.280 0.720 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 -2.377 14.256 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.127 4.127 3 C -0.116 4.116 4 C 0.304 3.696 5 O -0.463 6.463 6 N -0.361 5.361 7 C 0.105 3.895 8 H 0.090 0.910 9 C -0.577 4.577 10 H 0.085 0.915 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.738 3.262 14 H -0.195 1.195 15 H -0.195 1.195 16 H -0.178 1.178 17 C 0.386 3.614 18 F -0.169 7.169 19 F -0.176 7.176 20 F -0.166 7.166 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.162 4.162 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.247 0.753 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.676 -1.841 14.251 14.833 hybrid contribution -0.564 0.307 -0.552 0.847 sum 3.112 -1.534 13.700 14.132 Atomic orbital electron populations 1.21823 0.96548 1.02425 1.00670 1.21323 0.95307 0.91555 1.04485 1.22433 0.98971 0.97163 0.93001 1.21392 0.79673 0.83780 0.84714 1.90605 1.36122 1.33962 1.85633 1.47032 1.52858 1.30538 1.05624 1.19672 0.93074 0.87465 0.89305 0.90965 1.20678 1.02205 1.30621 1.04216 0.91487 1.25440 1.00840 0.92719 0.94866 1.69924 1.31801 1.25183 1.26200 0.86235 0.80511 0.78682 0.80794 1.19509 1.19483 1.17799 1.21520 0.81677 0.85589 0.72618 1.93093 1.89825 1.73858 1.60104 1.93133 1.96688 1.80929 1.46814 1.93082 1.41507 1.88521 1.93484 1.22829 0.99373 0.99577 0.93645 1.22795 0.95128 1.02802 0.94899 1.22962 0.92054 1.03022 0.98157 0.92324 0.96196 0.90444 0.90895 0.87337 0.75344 0.91038 0.91748 0.90138 0.87319 0.90213 0.88559 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.51 71.98 0.68 -3.51 16 2 C -0.09 -2.04 5.30 30.60 0.16 -1.88 16 3 C -0.11 -3.09 0.80 -52.40 -0.04 -3.13 16 4 C 0.52 19.85 5.05 87.66 0.44 20.29 16 5 O -0.58 -26.84 15.05 -3.04 -0.05 -26.88 16 6 N -0.71 -28.56 5.00 -446.09 -2.23 -30.80 16 7 C 0.21 9.82 1.56 44.25 0.07 9.89 16 8 H 0.07 3.63 5.01 -2.39 -0.01 3.62 16 9 C -0.54 -28.04 8.64 25.60 0.22 -27.82 16 10 H 0.07 3.80 7.76 -2.91 -0.02 3.78 16 11 C 0.07 3.58 5.47 84.65 0.46 4.04 16 12 N -0.90 -49.70 13.96 21.45 0.30 -49.40 16 13 Si 0.91 42.07 27.00 68.60 1.85 43.92 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.25 -11.86 6.40 99.48 0.64 -11.22 16 17 C 0.44 19.85 2.82 71.98 0.20 20.06 16 18 F -0.19 -8.59 17.08 44.97 0.77 -7.82 16 19 F -0.19 -8.55 15.82 44.97 0.71 -7.84 16 20 F -0.18 -7.95 16.71 44.97 0.75 -7.20 16 21 C -0.12 -2.86 6.72 31.12 0.21 -2.65 16 22 C -0.12 -2.09 7.73 31.12 0.24 -1.85 16 23 C -0.12 -2.76 7.22 31.12 0.22 -2.54 16 24 H 0.06 1.51 7.26 -2.38 -0.02 1.49 16 25 H 0.02 0.67 7.04 -2.39 -0.02 0.65 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 28 H 0.11 1.73 7.31 -2.39 -0.02 1.71 16 29 H 0.41 14.96 8.60 -92.71 -0.80 14.16 16 30 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.06 1.90 7.76 -2.39 -0.02 1.88 16 32 H 0.08 1.78 7.35 -2.38 -0.02 1.77 16 33 H 0.11 1.36 7.60 -2.38 -0.02 1.35 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 36 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 Total: -1.00 -62.37 306.69 5.23 -57.14 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.25 Total: 17.96 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 2.88 Total: 10.91 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.93 Total: -80.20 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 9 Polarization: -25.09 SS G_CDS: 2.23 Total: -22.85 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.85 Total: 43.92 kcal Total: -62.37 5.23 -57.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.471 kcal (2) G-P(sol) polarization free energy of solvation -62.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds