Wall clock time and date at job start Tue Mar 31 2020 00:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46956 * 2 1 4 4 C 1.50699 * 112.85416 * 296.39166 * 3 2 1 5 5 O 1.21279 * 120.00087 * 103.53474 * 4 3 2 6 6 N 1.34777 * 119.99841 * 283.54277 * 4 3 2 7 7 C 1.46501 * 119.99962 * 174.93649 * 6 4 3 8 8 H 1.08997 * 109.47048 * 34.99498 * 7 6 4 9 9 C 1.50698 * 109.47164 * 154.99604 * 7 6 4 10 10 H 1.08003 * 120.00129 * 0.02562 * 9 7 6 11 11 C 1.37880 * 119.99755 * 179.97438 * 9 7 6 12 12 N 1.31511 * 119.99934 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99753 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47166 * 90.00084 * 13 11 9 15 15 H 1.48502 * 109.46778 * 210.00558 * 13 11 9 16 16 H 1.48505 * 109.46967 * 330.00105 * 13 11 9 17 17 C 1.53001 * 109.46605 * 274.99719 * 7 6 4 18 18 F 1.39907 * 109.47417 * 60.00313 * 17 7 6 19 19 F 1.39906 * 109.46938 * 179.97438 * 17 7 6 20 20 F 1.39897 * 109.47271 * 299.99688 * 17 7 6 21 21 C 1.53785 * 113.68784 * 67.65984 * 3 2 1 22 22 C 1.53783 * 87.07987 * 89.12307 * 21 3 2 23 23 C 1.53780 * 87.08369 * 25.43173 * 22 21 3 24 24 H 1.09001 * 109.47109 * 177.75570 * 1 2 3 25 25 H 1.08998 * 109.47062 * 297.75439 * 1 2 3 26 26 H 1.09001 * 109.47227 * 57.75171 * 1 2 3 27 27 H 1.08999 * 109.46496 * 240.00589 * 2 1 3 28 28 H 1.08996 * 109.47326 * 120.00416 * 2 1 3 29 29 H 0.96994 * 120.00096 * 354.93215 * 6 4 3 30 30 H 0.97005 * 119.99874 * 180.02562 * 12 11 9 31 31 H 1.08994 * 113.61588 * 203.67240 * 21 3 2 32 32 H 1.09002 * 113.61531 * 334.58070 * 21 3 2 33 33 H 1.08995 * 113.61707 * 270.88387 * 22 21 3 34 34 H 1.09005 * 113.68969 * 139.98805 * 22 21 3 35 35 H 1.08999 * 113.61641 * 220.02006 * 23 22 21 36 36 H 1.09007 * 113.61548 * 89.11157 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6531 2.2001 -1.2440 5 8 0.7506 3.0092 -1.2051 6 7 2.3101 1.9783 -2.3997 7 6 1.8635 2.6309 -3.6330 8 1 1.4851 3.6264 -3.4007 9 6 3.0227 2.7446 -4.5892 10 1 3.9947 2.3680 -4.3068 11 6 2.8420 3.3285 -5.8252 12 7 1.6583 3.7866 -6.1692 13 14 4.2787 3.4688 -7.0108 14 1 4.3337 2.2571 -7.8674 15 1 4.1004 4.6709 -7.8643 16 1 5.5440 3.5902 -6.2430 17 6 0.7515 1.7997 -4.2759 18 9 -0.3246 1.6941 -3.3881 19 9 0.3246 2.4231 -5.4533 20 9 1.2373 0.5220 -4.5739 21 6 1.7413 2.2035 1.3026 22 6 3.0851 1.6722 1.8287 23 6 3.5297 1.5692 0.3602 24 1 -0.3633 -1.0269 -0.0402 25 1 -0.3633 0.4786 0.9094 26 1 -0.3634 0.5484 -0.8691 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.0785 1.3867 -2.4149 30 1 1.5311 4.1971 -7.0389 31 1 1.7176 3.2862 1.1801 32 1 0.8774 1.8188 1.8447 33 1 3.0072 0.7075 2.3299 34 1 3.6500 2.4045 2.4055 35 1 4.1096 0.6725 0.1414 36 1 3.9950 2.4787 -0.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928806113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:36 Heat of formation + Delta-G solvation = -169.298463 kcal Electronic energy + Delta-G solvation = -23838.858745 eV Core-core repulsion = 19908.897758 eV Total energy + Delta-G solvation = -3929.960987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 7.15 seconds Orbital eigenvalues (eV) -48.35387 -46.01286 -45.61376 -40.30391 -37.40695 -34.59363 -32.56243 -32.19839 -28.70963 -25.99658 -25.44798 -24.54878 -22.73821 -21.66685 -20.24036 -18.55285 -17.23505 -16.85035 -16.64763 -16.53381 -15.68108 -15.36417 -14.93406 -14.75290 -14.22771 -13.81440 -13.17948 -12.94518 -12.86217 -12.54686 -12.51934 -12.41401 -12.29117 -12.23749 -11.97114 -11.82012 -11.55996 -11.33208 -11.18514 -11.12893 -10.89220 -10.80542 -10.76699 -10.39914 -10.24085 -10.07877 -9.64212 -8.91913 -8.72668 -8.20895 -6.23715 -4.47529 3.17934 3.24168 3.26699 3.27420 3.87295 4.21325 4.53180 4.54510 4.64882 4.84315 4.86165 4.93076 5.28393 5.39602 5.51686 5.60598 5.72910 5.83884 5.87877 5.88548 5.93086 5.93844 5.99071 6.08135 6.21427 6.23879 6.37427 6.49468 6.53645 6.97134 7.22737 7.48570 7.63562 8.38748 8.50803 8.95560 9.20612 10.67942 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.006644 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.493851 B = 4213.100929 C = 4830.136879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C -0.105 4.105 4 C 0.523 3.477 5 O -0.537 6.537 6 N -0.710 5.710 7 C 0.243 3.757 8 H 0.085 0.915 9 C -0.551 4.551 10 H 0.077 0.923 11 C 0.064 3.936 12 N -0.840 5.840 13 Si 0.914 3.086 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.417 3.583 18 F -0.219 7.219 19 F -0.137 7.137 20 F -0.209 7.209 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.130 4.130 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.397 0.603 30 H 0.268 0.732 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -6.072 10.782 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.129 4.129 3 C -0.108 4.108 4 C 0.309 3.691 5 O -0.414 6.414 6 N -0.359 5.359 7 C 0.137 3.863 8 H 0.102 0.898 9 C -0.588 4.588 10 H 0.095 0.905 11 C -0.144 4.144 12 N -0.473 5.473 13 Si 0.741 3.259 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.195 1.195 17 C 0.361 3.639 18 F -0.201 7.201 19 F -0.118 7.118 20 F -0.191 7.191 21 C -0.149 4.149 22 C -0.178 4.178 23 C -0.167 4.167 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.957 -5.392 10.611 12.062 hybrid contribution 0.764 -0.417 -0.954 1.291 sum 2.721 -5.808 9.657 11.593 Atomic orbital electron populations 1.21776 0.95121 1.01401 1.02875 1.21221 0.96652 0.92596 1.02389 1.22169 0.97744 0.96845 0.94062 1.20292 0.82029 0.82546 0.84277 1.90668 1.30388 1.35043 1.85288 1.46058 1.32853 1.48991 1.08024 1.19702 0.92444 0.92313 0.81804 0.89765 1.20882 0.94879 1.42932 1.00109 0.90507 1.25090 0.96579 0.94669 0.98096 1.70401 1.20620 1.34523 1.21799 0.86225 0.81525 0.77914 0.80256 1.20211 1.20792 1.19487 1.23167 0.83488 0.78714 0.78531 1.93055 1.60698 1.96431 1.69946 1.93405 1.90713 1.80512 1.47181 1.92985 1.88343 1.43823 1.93970 1.22806 0.97344 1.00581 0.94126 1.22825 0.97500 1.01308 0.96161 1.22995 0.94395 1.02859 0.96485 0.92818 0.92577 0.91772 0.91257 0.91155 0.76892 0.92137 0.89442 0.91024 0.90161 0.91355 0.90778 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.62 37.16 0.36 -1.81 16 2 C -0.09 -1.18 5.30 -26.73 -0.14 -1.32 16 3 C -0.10 -1.52 0.80 -154.84 -0.12 -1.65 16 4 C 0.52 10.29 5.24 -10.99 -0.06 10.24 16 5 O -0.54 -12.66 15.26 5.56 0.08 -12.57 16 6 N -0.71 -14.58 4.94 -54.93 -0.27 -14.85 16 7 C 0.24 6.07 2.22 -69.08 -0.15 5.92 16 8 H 0.08 2.37 7.51 -51.93 -0.39 1.98 16 9 C -0.55 -14.09 8.47 -34.44 -0.29 -14.38 16 10 H 0.08 1.85 7.74 -52.48 -0.41 1.45 16 11 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 12 N -0.84 -23.17 9.50 55.43 0.53 -22.64 16 13 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 C 0.42 10.74 2.81 37.16 0.10 10.85 16 18 F -0.22 -5.57 15.88 2.25 0.04 -5.53 16 19 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 20 F -0.21 -5.17 16.94 2.25 0.04 -5.14 16 21 C -0.11 -1.46 6.73 -25.92 -0.17 -1.63 16 22 C -0.14 -1.46 7.73 -25.92 -0.20 -1.66 16 23 C -0.13 -1.55 6.98 -25.92 -0.18 -1.73 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.73 6.96 -51.93 -0.36 0.37 16 26 H 0.06 1.13 7.44 -51.93 -0.39 0.75 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.73 7.31 -51.93 -0.38 0.35 16 29 H 0.40 7.15 8.35 -40.82 -0.34 6.81 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 32 H 0.07 0.88 6.91 -51.93 -0.36 0.52 16 33 H 0.08 0.72 7.60 -51.93 -0.39 0.32 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -29.58 304.07 -5.62 -35.21 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.67 Total: 5.24 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.95 Total: 4.40 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.26 Total: -37.50 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 9 Polarization: -14.57 SS G_CDS: 0.10 Total: -14.46 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.58 -5.62 -35.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.090 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.15 seconds