Wall clock time and date at job start Tue Mar 31 2020 00:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46956 * 2 1 4 4 C 1.50699 * 112.85416 * 296.39166 * 3 2 1 5 5 O 1.21279 * 120.00087 * 103.53474 * 4 3 2 6 6 N 1.34777 * 119.99841 * 283.54277 * 4 3 2 7 7 C 1.46501 * 119.99962 * 174.93649 * 6 4 3 8 8 H 1.08997 * 109.47048 * 34.99498 * 7 6 4 9 9 C 1.50698 * 109.47164 * 154.99604 * 7 6 4 10 10 H 1.08003 * 120.00129 * 0.02562 * 9 7 6 11 11 C 1.37880 * 119.99755 * 179.97438 * 9 7 6 12 12 N 1.31511 * 119.99934 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99753 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47166 * 90.00084 * 13 11 9 15 15 H 1.48502 * 109.46778 * 210.00558 * 13 11 9 16 16 H 1.48505 * 109.46967 * 330.00105 * 13 11 9 17 17 C 1.53001 * 109.46605 * 274.99719 * 7 6 4 18 18 F 1.39907 * 109.47417 * 60.00313 * 17 7 6 19 19 F 1.39906 * 109.46938 * 179.97438 * 17 7 6 20 20 F 1.39897 * 109.47271 * 299.99688 * 17 7 6 21 21 C 1.53785 * 113.68784 * 67.65984 * 3 2 1 22 22 C 1.53783 * 87.07987 * 89.12307 * 21 3 2 23 23 C 1.53780 * 87.08369 * 25.43173 * 22 21 3 24 24 H 1.09001 * 109.47109 * 177.75570 * 1 2 3 25 25 H 1.08998 * 109.47062 * 297.75439 * 1 2 3 26 26 H 1.09001 * 109.47227 * 57.75171 * 1 2 3 27 27 H 1.08999 * 109.46496 * 240.00589 * 2 1 3 28 28 H 1.08996 * 109.47326 * 120.00416 * 2 1 3 29 29 H 0.96994 * 120.00096 * 354.93215 * 6 4 3 30 30 H 0.97005 * 119.99874 * 180.02562 * 12 11 9 31 31 H 1.08994 * 113.61588 * 203.67240 * 21 3 2 32 32 H 1.09002 * 113.61531 * 334.58070 * 21 3 2 33 33 H 1.08995 * 113.61707 * 270.88387 * 22 21 3 34 34 H 1.09005 * 113.68969 * 139.98805 * 22 21 3 35 35 H 1.08999 * 113.61641 * 220.02006 * 23 22 21 36 36 H 1.09007 * 113.61548 * 89.11157 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6531 2.2001 -1.2440 5 8 0.7506 3.0092 -1.2051 6 7 2.3101 1.9783 -2.3997 7 6 1.8635 2.6309 -3.6330 8 1 1.4851 3.6264 -3.4007 9 6 3.0227 2.7446 -4.5892 10 1 3.9947 2.3680 -4.3068 11 6 2.8420 3.3285 -5.8252 12 7 1.6583 3.7866 -6.1692 13 14 4.2787 3.4688 -7.0108 14 1 4.3337 2.2571 -7.8674 15 1 4.1004 4.6709 -7.8643 16 1 5.5440 3.5902 -6.2430 17 6 0.7515 1.7997 -4.2759 18 9 -0.3246 1.6941 -3.3881 19 9 0.3246 2.4231 -5.4533 20 9 1.2373 0.5220 -4.5739 21 6 1.7413 2.2035 1.3026 22 6 3.0851 1.6722 1.8287 23 6 3.5297 1.5692 0.3602 24 1 -0.3633 -1.0269 -0.0402 25 1 -0.3633 0.4786 0.9094 26 1 -0.3634 0.5484 -0.8691 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.0785 1.3867 -2.4149 30 1 1.5311 4.1971 -7.0389 31 1 1.7176 3.2862 1.1801 32 1 0.8774 1.8188 1.8447 33 1 3.0072 0.7075 2.3299 34 1 3.6500 2.4045 2.4055 35 1 4.1096 0.6725 0.1414 36 1 3.9950 2.4787 -0.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928806113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:35 Heat of formation + Delta-G solvation = -187.619584 kcal Electronic energy + Delta-G solvation = -23839.653208 eV Core-core repulsion = 19908.897758 eV Total energy + Delta-G solvation = -3930.755451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -50.45499 -48.09221 -47.76262 -41.59901 -38.83686 -36.45739 -34.45166 -33.26688 -30.55803 -27.26297 -26.56782 -26.45782 -24.04171 -23.24742 -21.83058 -20.05203 -18.92545 -18.89511 -18.67062 -18.14840 -17.40395 -16.90770 -16.45918 -16.26232 -15.69876 -15.03018 -14.97897 -14.83173 -14.52855 -14.45657 -14.32699 -14.28277 -14.06719 -13.90894 -13.57929 -13.28080 -13.05790 -12.76219 -12.69037 -12.62230 -12.32736 -12.23832 -12.17176 -11.89064 -11.58477 -11.22585 -11.07064 -10.71283 -10.45201 -10.02346 -8.23257 -6.54502 1.44918 1.45725 1.57373 1.69984 2.23881 2.40486 2.51596 2.91747 3.46281 3.54198 3.73716 3.81278 3.83545 3.93245 4.01812 4.24279 4.37958 4.49178 4.56045 4.82819 4.86674 4.88343 4.92426 5.04019 5.04358 5.15906 5.18089 5.35521 5.39537 5.44101 5.53287 5.57636 5.63846 6.50680 6.76447 7.15301 7.40174 8.69621 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.006644 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.493851 B = 4213.100929 C = 4830.136879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 C -0.108 4.108 4 C 0.517 3.483 5 O -0.584 6.584 6 N -0.705 5.705 7 C 0.250 3.750 8 H 0.042 0.958 9 C -0.561 4.561 10 H 0.092 0.908 11 C 0.013 3.987 12 N -0.876 5.876 13 Si 0.984 3.016 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.256 1.256 17 C 0.415 3.585 18 F -0.220 7.220 19 F -0.151 7.151 20 F -0.202 7.202 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.126 4.126 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.411 0.589 30 H 0.268 0.732 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -7.854 12.201 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.305 3.695 5 O -0.464 6.464 6 N -0.355 5.355 7 C 0.142 3.858 8 H 0.060 0.940 9 C -0.598 4.598 10 H 0.110 0.890 11 C -0.192 4.192 12 N -0.511 5.511 13 Si 0.807 3.193 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.179 1.179 17 C 0.359 3.641 18 F -0.202 7.202 19 F -0.133 7.133 20 F -0.184 7.184 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.164 4.164 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.247 0.753 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.254 -7.200 12.060 14.676 hybrid contribution -0.032 0.153 -1.367 1.376 sum 4.222 -7.047 10.693 13.484 Atomic orbital electron populations 1.21774 0.96354 1.01937 1.01075 1.21290 0.95514 0.91416 1.04224 1.22382 1.00243 0.97300 0.91226 1.21400 0.80789 0.81960 0.85329 1.90637 1.32419 1.37250 1.86087 1.45959 1.33471 1.48962 1.07095 1.19278 0.92176 0.90736 0.83591 0.93996 1.21234 0.95427 1.42817 1.00274 0.88989 1.26039 0.99133 0.94083 0.99936 1.70539 1.22837 1.35429 1.22249 0.85153 0.78555 0.77736 0.77865 1.19834 1.20798 1.17937 1.23295 0.83677 0.79025 0.78143 1.93052 1.60857 1.96453 1.69888 1.93375 1.90914 1.80886 1.48082 1.92982 1.88223 1.43248 1.93923 1.22854 0.99838 0.99149 0.93816 1.22793 0.94740 1.02794 0.95230 1.23025 0.92368 1.03442 0.97530 0.90843 0.91745 0.96440 0.91530 0.87038 0.75258 0.92178 0.91934 0.90209 0.87340 0.90080 0.88249 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.62 71.98 0.69 -3.44 16 2 C -0.09 -2.01 5.30 30.60 0.16 -1.85 16 3 C -0.11 -2.98 0.80 -52.40 -0.04 -3.02 16 4 C 0.52 20.71 5.24 87.66 0.46 21.17 16 5 O -0.58 -28.91 15.26 -3.03 -0.05 -28.96 16 6 N -0.70 -29.25 4.94 -446.10 -2.20 -31.46 16 7 C 0.25 12.84 2.22 44.24 0.10 12.94 16 8 H 0.04 2.52 7.51 -2.39 -0.02 2.50 16 9 C -0.56 -28.76 8.47 25.60 0.22 -28.55 16 10 H 0.09 4.33 7.74 -2.91 -0.02 4.30 16 11 C 0.01 0.69 5.20 84.66 0.44 1.13 16 12 N -0.88 -49.45 9.50 21.45 0.20 -49.25 16 13 Si 0.98 40.83 29.54 68.60 2.03 42.85 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 15 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 C 0.41 21.97 2.81 71.98 0.20 22.17 16 18 F -0.22 -11.65 15.88 44.97 0.71 -10.94 16 19 F -0.15 -8.73 12.91 44.97 0.58 -8.15 16 20 F -0.20 -10.03 16.94 44.97 0.76 -9.27 16 21 C -0.12 -2.94 6.73 31.12 0.21 -2.73 16 22 C -0.12 -1.99 7.73 31.12 0.24 -1.75 16 23 C -0.13 -2.63 6.98 31.12 0.22 -2.41 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.58 6.96 -2.39 -0.02 1.56 16 26 H 0.02 0.60 7.44 -2.39 -0.02 0.59 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.11 1.73 7.31 -2.39 -0.02 1.71 16 29 H 0.41 14.48 8.35 -92.71 -0.77 13.71 16 30 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 31 H 0.06 1.85 7.93 -2.39 -0.02 1.83 16 32 H 0.08 1.81 6.91 -2.39 -0.02 1.80 16 33 H 0.11 1.29 7.60 -2.39 -0.02 1.27 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 36 H 0.07 1.75 8.09 -2.38 -0.02 1.73 16 Total: -1.00 -66.81 304.07 5.27 -61.54 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.33 Total: 19.96 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 2.90 Total: 13.66 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -2.00 Total: -80.70 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 9 Polarization: -30.41 SS G_CDS: 2.06 Total: -28.35 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -66.81 5.27 -61.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.081 kcal (2) G-P(sol) polarization free energy of solvation -66.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds