Wall clock time and date at job start Tue Mar 31 2020 00:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47004 * 2 1 4 4 C 1.52993 * 109.47031 * 184.99122 * 3 2 1 5 5 C 1.50700 * 115.55360 * 80.38544 * 4 3 2 6 6 O 1.21280 * 120.00292 * 219.92326 * 5 4 3 7 7 N 1.34781 * 119.99598 * 39.92432 * 5 4 3 8 8 C 1.46502 * 119.99771 * 174.78361 * 7 5 4 9 9 H 1.08999 * 109.46957 * 35.00436 * 8 7 5 10 10 C 1.50704 * 109.47075 * 154.99840 * 8 7 5 11 11 H 1.07996 * 119.99657 * 0.02562 * 10 8 7 12 12 C 1.37875 * 120.00041 * 179.97438 * 10 8 7 13 13 N 1.31512 * 120.00089 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99997 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47051 * 90.00173 * 14 12 10 16 16 H 1.48497 * 109.47288 * 210.00251 * 14 12 10 17 17 H 1.48501 * 109.46903 * 330.00496 * 14 12 10 18 18 C 1.52996 * 109.47198 * 274.99993 * 8 7 5 19 19 F 1.39901 * 109.47346 * 60.00244 * 18 8 7 20 20 F 1.39907 * 109.47193 * 180.02562 * 18 8 7 21 21 F 1.39907 * 109.47289 * 299.99869 * 18 8 7 22 22 C 1.53005 * 117.50153 * 294.71377 * 4 3 2 23 23 C 1.52996 * 60.03284 * 252.49908 * 22 4 3 24 24 H 1.08999 * 109.47381 * 299.99640 * 1 2 3 25 25 H 1.08997 * 109.47098 * 60.00509 * 1 2 3 26 26 H 1.09000 * 109.46747 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46999 * 240.00246 * 2 1 3 28 28 H 1.09000 * 109.47165 * 120.00258 * 2 1 3 29 29 H 1.09003 * 109.47166 * 64.98810 * 3 2 1 30 30 H 1.09002 * 109.47230 * 304.98795 * 3 2 1 31 31 H 0.96999 * 120.00320 * 354.78845 * 7 5 4 32 32 H 0.97001 * 120.00135 * 179.97438 * 13 12 10 33 33 H 1.09005 * 117.49375 * 0.02562 * 22 4 3 34 34 H 1.08995 * 117.49862 * 145.00035 * 22 4 3 35 35 H 1.09005 * 117.50076 * 107.49952 * 23 22 4 36 36 H 1.09002 * 117.49832 * 252.51694 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 -0.1255 5 6 4.1024 1.2570 -1.5208 6 8 5.0796 0.5630 -1.7061 7 7 3.4972 1.8608 -2.5628 8 6 4.0843 1.7729 -3.9022 9 1 4.5508 0.7962 -4.0310 10 6 3.0040 1.9540 -4.9371 11 1 1.9823 2.1185 -4.6281 12 6 3.3200 1.9106 -6.2785 13 7 4.5642 1.7108 -6.6548 14 14 1.9807 2.1344 -7.5614 15 1 1.8491 3.5758 -7.8934 16 1 2.3370 1.3747 -8.7866 17 1 0.6913 1.6305 -7.0239 18 6 5.1394 2.8682 -4.0693 19 9 6.1424 2.7001 -3.1086 20 9 5.6997 2.7846 -5.3486 21 9 4.5406 4.1218 -3.9040 22 6 4.3694 0.8423 1.0283 23 6 4.3509 2.3577 0.8184 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.7514 1.9299 0.9313 30 1 1.6055 1.9815 -0.8419 31 1 2.6730 2.3535 -2.4260 32 1 4.7865 1.6800 -7.5984 33 1 3.8122 0.4445 1.8766 34 1 5.2874 0.3107 0.7780 35 1 3.7817 2.9573 1.5289 36 1 5.2568 2.8230 0.4299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928806628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:02 Heat of formation + Delta-G solvation = -167.401518 kcal Electronic energy + Delta-G solvation = -23424.131204 eV Core-core repulsion = 19494.252475 eV Total energy + Delta-G solvation = -3929.878730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -48.36630 -46.02621 -45.62441 -39.71589 -36.77529 -34.71749 -33.58776 -32.53215 -28.77769 -27.16110 -24.61145 -23.44285 -22.52541 -21.37562 -20.84297 -19.09853 -17.30412 -16.87973 -16.65031 -16.59082 -15.74817 -15.22642 -14.80014 -14.71805 -14.32695 -13.68272 -13.44074 -13.22571 -12.95039 -12.78818 -12.45750 -12.40022 -12.28359 -12.13318 -11.99121 -11.83053 -11.54354 -11.40670 -11.25018 -11.17439 -10.90562 -10.79918 -10.63442 -10.40524 -10.26077 -9.80865 -9.64298 -9.13257 -8.73449 -8.24290 -6.24360 -4.48305 3.05313 3.18281 3.24226 3.26621 3.74088 4.02450 4.20793 4.54375 4.68670 4.88270 4.92024 4.99322 5.14497 5.21782 5.32153 5.45780 5.69638 5.72282 5.79727 5.83133 5.86546 5.91266 5.98624 6.02517 6.16511 6.23835 6.28749 6.29887 6.39672 6.94920 7.19321 7.47073 7.62575 8.35131 8.49667 8.91464 9.19684 10.67330 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.006966 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.922319 B = 4018.499401 C = 5063.194341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.159 4.159 5 C 0.544 3.456 6 O -0.538 6.538 7 N -0.707 5.707 8 C 0.244 3.756 9 H 0.086 0.914 10 C -0.551 4.551 11 H 0.077 0.923 12 C 0.065 3.935 13 N -0.840 5.840 14 Si 0.915 3.085 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.417 3.583 19 F -0.220 7.220 20 F -0.136 7.136 21 F -0.209 7.209 22 C -0.145 4.145 23 C -0.153 4.153 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.398 0.602 32 H 0.268 0.732 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 0.471 11.586 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.116 4.116 4 C -0.163 4.163 5 C 0.329 3.671 6 O -0.415 6.415 7 N -0.356 5.356 8 C 0.138 3.862 9 H 0.103 0.897 10 C -0.588 4.588 11 H 0.095 0.905 12 C -0.144 4.144 13 N -0.473 5.473 14 Si 0.741 3.259 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.361 3.639 19 F -0.202 7.202 20 F -0.117 7.117 21 F -0.191 7.191 22 C -0.182 4.182 23 C -0.190 4.190 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.531 -0.026 11.239 12.118 hybrid contribution -0.758 0.702 -0.747 1.275 sum -5.290 0.675 10.491 11.769 Atomic orbital electron populations 1.21769 0.95847 1.01547 1.01704 1.21496 0.95524 0.96465 1.02553 1.21153 0.90493 0.97563 1.02430 1.21579 0.95091 1.08760 0.90838 1.19426 0.83217 0.79357 0.85126 1.90673 1.26908 1.38627 1.85292 1.45997 1.27679 1.53770 1.08144 1.19728 0.92156 0.94140 0.80165 0.89665 1.20869 0.93721 1.54504 0.89670 0.90478 1.25087 0.96196 0.94217 0.98915 1.70398 1.16489 1.43326 1.17113 0.86219 0.81092 0.78446 0.80135 1.20202 1.20779 1.19464 1.23176 0.82724 0.83671 0.74378 1.93056 1.65421 1.95555 1.66164 1.93408 1.86318 1.95665 1.36341 1.92990 1.84126 1.46436 1.95530 1.22933 1.02090 0.95689 0.97510 1.23054 1.01844 0.93581 1.00569 0.93040 0.92451 0.92864 0.91535 0.92013 0.91287 0.91019 0.76734 0.92113 0.88387 0.87603 0.88145 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.45 5.76 -26.73 -0.15 -1.61 16 3 C -0.08 -0.95 5.09 -26.73 -0.14 -1.08 16 4 C -0.16 -2.37 1.99 -155.62 -0.31 -2.68 16 5 C 0.54 10.91 6.77 -10.98 -0.07 10.83 16 6 O -0.54 -12.85 15.10 5.56 0.08 -12.77 16 7 N -0.71 -14.67 4.92 -54.93 -0.27 -14.94 16 8 C 0.24 6.11 2.23 -69.08 -0.15 5.95 16 9 H 0.09 2.40 7.51 -51.93 -0.39 2.01 16 10 C -0.55 -14.08 8.47 -34.44 -0.29 -14.37 16 11 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 12 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 13 N -0.84 -23.13 9.50 55.43 0.53 -22.60 16 14 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 18 C 0.42 10.78 2.81 37.16 0.10 10.88 16 19 F -0.22 -5.63 15.89 2.25 0.04 -5.60 16 20 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 21 F -0.21 -5.19 16.94 2.25 0.04 -5.15 16 22 C -0.14 -1.90 9.41 -26.73 -0.25 -2.15 16 23 C -0.15 -1.98 9.89 -26.69 -0.26 -2.25 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 29 H 0.07 0.69 7.95 -51.93 -0.41 0.27 16 30 H 0.07 0.88 6.62 -51.93 -0.34 0.53 16 31 H 0.40 7.25 7.02 -40.82 -0.29 6.96 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.10 1.03 8.00 -51.93 -0.42 0.61 16 34 H 0.11 1.57 7.68 -51.93 -0.40 1.18 16 35 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -29.68 311.09 -5.87 -35.56 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.73 Total: 5.55 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.25 Total: 3.96 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.26 Total: -37.54 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 9 Polarization: -14.62 SS G_CDS: 0.10 Total: -14.52 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.68 -5.87 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.845 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds