Wall clock time and date at job start Tue Mar 31 2020 00:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47004 * 2 1 4 4 C 1.52993 * 109.47031 * 184.99122 * 3 2 1 5 5 C 1.50700 * 115.55360 * 80.38544 * 4 3 2 6 6 O 1.21280 * 120.00292 * 219.92326 * 5 4 3 7 7 N 1.34781 * 119.99598 * 39.92432 * 5 4 3 8 8 C 1.46502 * 119.99771 * 174.78361 * 7 5 4 9 9 H 1.08999 * 109.46957 * 35.00436 * 8 7 5 10 10 C 1.50704 * 109.47075 * 154.99840 * 8 7 5 11 11 H 1.07996 * 119.99657 * 0.02562 * 10 8 7 12 12 C 1.37875 * 120.00041 * 179.97438 * 10 8 7 13 13 N 1.31512 * 120.00089 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99997 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47051 * 90.00173 * 14 12 10 16 16 H 1.48497 * 109.47288 * 210.00251 * 14 12 10 17 17 H 1.48501 * 109.46903 * 330.00496 * 14 12 10 18 18 C 1.52996 * 109.47198 * 274.99993 * 8 7 5 19 19 F 1.39901 * 109.47346 * 60.00244 * 18 8 7 20 20 F 1.39907 * 109.47193 * 180.02562 * 18 8 7 21 21 F 1.39907 * 109.47289 * 299.99869 * 18 8 7 22 22 C 1.53005 * 117.50153 * 294.71377 * 4 3 2 23 23 C 1.52996 * 60.03284 * 252.49908 * 22 4 3 24 24 H 1.08999 * 109.47381 * 299.99640 * 1 2 3 25 25 H 1.08997 * 109.47098 * 60.00509 * 1 2 3 26 26 H 1.09000 * 109.46747 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46999 * 240.00246 * 2 1 3 28 28 H 1.09000 * 109.47165 * 120.00258 * 2 1 3 29 29 H 1.09003 * 109.47166 * 64.98810 * 3 2 1 30 30 H 1.09002 * 109.47230 * 304.98795 * 3 2 1 31 31 H 0.96999 * 120.00320 * 354.78845 * 7 5 4 32 32 H 0.97001 * 120.00135 * 179.97438 * 13 12 10 33 33 H 1.09005 * 117.49375 * 0.02562 * 22 4 3 34 34 H 1.08995 * 117.49862 * 145.00035 * 22 4 3 35 35 H 1.09005 * 117.50076 * 107.49952 * 23 22 4 36 36 H 1.09002 * 117.49832 * 252.51694 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 -0.1255 5 6 4.1024 1.2570 -1.5208 6 8 5.0796 0.5630 -1.7061 7 7 3.4972 1.8608 -2.5628 8 6 4.0843 1.7729 -3.9022 9 1 4.5508 0.7962 -4.0310 10 6 3.0040 1.9540 -4.9371 11 1 1.9823 2.1185 -4.6281 12 6 3.3200 1.9106 -6.2785 13 7 4.5642 1.7108 -6.6548 14 14 1.9807 2.1344 -7.5614 15 1 1.8491 3.5758 -7.8934 16 1 2.3370 1.3747 -8.7866 17 1 0.6913 1.6305 -7.0239 18 6 5.1394 2.8682 -4.0693 19 9 6.1424 2.7001 -3.1086 20 9 5.6997 2.7846 -5.3486 21 9 4.5406 4.1218 -3.9040 22 6 4.3694 0.8423 1.0283 23 6 4.3509 2.3577 0.8184 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.7514 1.9299 0.9313 30 1 1.6055 1.9815 -0.8419 31 1 2.6730 2.3535 -2.4260 32 1 4.7865 1.6800 -7.5984 33 1 3.8122 0.4445 1.8766 34 1 5.2874 0.3107 0.7780 35 1 3.7817 2.9573 1.5289 36 1 5.2568 2.8230 0.4299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928806628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:02 Heat of formation + Delta-G solvation = -185.162697 kcal Electronic energy + Delta-G solvation = -23424.901387 eV Core-core repulsion = 19494.252475 eV Total energy + Delta-G solvation = -3930.648912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.47415 -48.11414 -47.77561 -41.17690 -38.11623 -36.53029 -34.67561 -34.33229 -30.60260 -28.19447 -26.64428 -24.96946 -23.55370 -22.88336 -22.19610 -20.70000 -19.08923 -18.92076 -18.67813 -18.25542 -17.48730 -16.93161 -16.39543 -16.04922 -15.54567 -15.11610 -15.06073 -15.00689 -14.64818 -14.52318 -14.34936 -14.22213 -14.08823 -13.98267 -13.69193 -13.09739 -13.02543 -12.78451 -12.68414 -12.58415 -12.40375 -12.22875 -12.13941 -11.61057 -11.53542 -11.30314 -10.87782 -10.71681 -10.71165 -10.07560 -8.23894 -6.55240 1.44888 1.45117 1.54436 1.57380 2.15254 2.36683 2.48524 2.85698 2.91737 3.60137 3.67379 3.77021 3.85232 3.87865 4.01700 4.17839 4.29052 4.38224 4.54615 4.73027 4.83421 4.87755 4.92592 4.99387 5.05095 5.07399 5.25861 5.32331 5.39094 5.40679 5.51398 5.52651 5.62257 6.49567 6.70354 7.14118 7.33739 8.69059 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.006966 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.922319 B = 4018.499401 C = 5063.194341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.072 4.072 4 C -0.173 4.173 5 C 0.535 3.465 6 O -0.586 6.586 7 N -0.701 5.701 8 C 0.250 3.750 9 H 0.044 0.956 10 C -0.561 4.561 11 H 0.092 0.908 12 C 0.014 3.986 13 N -0.876 5.876 14 Si 0.984 3.016 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.256 1.256 18 C 0.414 3.586 19 F -0.221 7.221 20 F -0.150 7.150 21 F -0.201 7.201 22 C -0.137 4.137 23 C -0.139 4.139 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.411 0.589 32 H 0.269 0.731 33 H 0.135 0.865 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 1.341 13.286 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.110 4.110 4 C -0.176 4.176 5 C 0.324 3.676 6 O -0.466 6.466 7 N -0.351 5.351 8 C 0.143 3.857 9 H 0.062 0.938 10 C -0.597 4.597 11 H 0.110 0.890 12 C -0.191 4.191 13 N -0.510 5.510 14 Si 0.807 3.193 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.180 1.180 18 C 0.358 3.642 19 F -0.203 7.203 20 F -0.131 7.131 21 F -0.183 7.183 22 C -0.174 4.174 23 C -0.176 4.176 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.249 0.751 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.098 0.902 35 H 0.159 0.841 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.996 0.858 12.971 14.763 hybrid contribution 0.082 0.409 -1.239 1.307 sum -6.915 1.267 11.732 13.677 Atomic orbital electron populations 1.21742 0.94376 1.02019 1.02379 1.21492 0.96781 0.96266 1.01474 1.21197 0.87877 0.97815 1.04071 1.21579 0.97133 1.11318 0.87571 1.20443 0.82353 0.77846 0.86977 1.90643 1.29121 1.40518 1.86303 1.45885 1.28164 1.54169 1.06924 1.19313 0.91962 0.91849 0.82601 0.93814 1.21210 0.94309 1.54214 0.89986 0.89023 1.26030 0.98342 0.93642 1.01111 1.70531 1.18614 1.44336 1.17500 0.85152 0.78594 0.78371 0.77196 1.19793 1.20747 1.17966 1.23303 0.82839 0.84215 0.73838 1.93048 1.65584 1.95606 1.66107 1.93381 1.86580 1.95784 1.37343 1.92988 1.83950 1.45931 1.95458 1.23028 1.01026 0.95927 0.97452 1.23199 1.00865 0.93767 0.99746 0.90928 0.93159 0.92592 0.95026 0.90757 0.87698 0.91460 0.75131 0.92124 0.84713 0.90194 0.84073 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.89 16 2 C -0.12 -2.64 5.76 30.59 0.18 -2.46 16 3 C -0.07 -1.52 5.09 30.59 0.16 -1.37 16 4 C -0.17 -4.85 1.99 -52.90 -0.11 -4.96 16 5 C 0.54 21.86 6.77 87.66 0.59 22.45 16 6 O -0.59 -29.27 15.10 -3.03 -0.05 -29.31 16 7 N -0.70 -29.49 4.92 -446.09 -2.20 -31.68 16 8 C 0.25 12.90 2.23 44.24 0.10 13.00 16 9 H 0.04 2.62 7.51 -2.39 -0.02 2.61 16 10 C -0.56 -28.77 8.47 25.60 0.22 -28.56 16 11 H 0.09 4.33 7.74 -2.91 -0.02 4.30 16 12 C 0.01 0.73 5.20 84.65 0.44 1.17 16 13 N -0.88 -49.26 9.50 21.45 0.20 -49.06 16 14 Si 0.98 40.79 29.54 68.60 2.03 42.81 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 C 0.41 21.95 2.81 71.98 0.20 22.15 16 19 F -0.22 -11.69 15.89 44.97 0.71 -10.97 16 20 F -0.15 -8.60 12.91 44.97 0.58 -8.02 16 21 F -0.20 -10.01 16.94 44.97 0.76 -9.25 16 22 C -0.14 -3.31 9.41 30.59 0.29 -3.02 16 23 C -0.14 -3.22 9.89 30.62 0.30 -2.92 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.03 0.88 8.14 -2.38 -0.02 0.87 16 28 H 0.07 1.40 7.84 -2.39 -0.02 1.38 16 29 H 0.10 1.52 7.95 -2.39 -0.02 1.50 16 30 H 0.07 1.47 6.62 -2.39 -0.02 1.46 16 31 H 0.41 14.77 7.02 -92.71 -0.65 14.12 16 32 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.13 2.26 8.00 -2.38 -0.02 2.24 16 34 H 0.08 2.37 7.68 -2.39 -0.02 2.36 16 35 H 0.14 2.16 8.08 -2.38 -0.02 2.14 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.54 311.09 5.58 -60.96 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.45 Total: 20.93 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 3.08 Total: 13.59 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -1.99 Total: -80.74 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 9 Polarization: -30.30 SS G_CDS: 2.06 Total: -28.24 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -66.54 5.58 -60.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.203 kcal (2) G-P(sol) polarization free energy of solvation -66.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds