Wall clock time and date at job start Tue Mar 31 2020 00:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47271 * 2 1 4 4 C 1.53002 * 109.46802 * 119.99848 * 2 1 3 5 5 H 1.09000 * 115.54934 * 30.88351 * 4 2 1 6 6 C 1.53077 * 117.51331 * 245.16290 * 4 2 1 7 7 C 1.52996 * 117.50038 * 176.55158 * 4 2 1 8 8 H 1.08997 * 117.50214 * 215.00505 * 7 4 2 9 9 C 1.50706 * 117.49869 * 0.02562 * 7 4 2 10 10 O 1.21284 * 119.99468 * 342.13737 * 9 7 4 11 11 N 1.34778 * 120.00147 * 162.13698 * 9 7 4 12 12 C 1.46500 * 119.99942 * 180.02562 * 11 9 7 13 13 H 1.08998 * 109.47062 * 34.99389 * 12 11 9 14 14 C 1.50692 * 109.47031 * 154.99777 * 12 11 9 15 15 H 1.08005 * 120.00091 * 90.02001 * 14 12 11 16 16 C 1.37879 * 120.00505 * 270.01709 * 14 12 11 17 17 N 1.31511 * 120.00201 * 184.90542 * 16 14 12 18 18 Si 1.86803 * 119.99518 * 4.90273 * 16 14 12 19 19 H 1.48492 * 109.47262 * 267.38105 * 18 16 14 20 20 H 1.48505 * 109.47138 * 27.38520 * 18 16 14 21 21 H 1.48501 * 109.46821 * 147.38213 * 18 16 14 22 22 C 1.52999 * 109.46926 * 275.00148 * 12 11 9 23 23 F 1.39912 * 109.46863 * 299.14574 * 22 12 11 24 24 F 1.39894 * 109.47502 * 59.14653 * 22 12 11 25 25 F 1.39899 * 109.47154 * 179.15012 * 22 12 11 26 26 H 1.08997 * 109.47577 * 304.45008 * 1 2 3 27 27 H 1.09004 * 109.46727 * 64.44520 * 1 2 3 28 28 H 1.08998 * 109.47296 * 184.44213 * 1 2 3 29 29 H 1.08998 * 109.47071 * 239.99328 * 2 1 3 30 30 H 1.08994 * 109.47348 * 52.84864 * 3 2 1 31 31 H 1.08997 * 109.47408 * 172.85231 * 3 2 1 32 32 H 1.09000 * 109.46911 * 292.84792 * 3 2 1 33 33 H 1.08996 * 117.49810 * 145.03506 * 6 4 2 34 34 H 1.09005 * 117.51076 * 359.97438 * 6 4 2 35 35 H 0.96998 * 119.99604 * 359.97438 * 11 9 7 36 36 H 0.97002 * 119.99621 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.4009 -1.5206 1.6244 6 6 2.8133 0.1075 2.2781 7 6 3.5526 -0.8992 1.3943 8 1 3.9087 -1.8157 1.8648 9 6 4.4263 -0.3502 0.2960 10 8 3.9470 -0.0903 -0.7873 11 7 5.7403 -0.1480 0.5176 12 6 6.5895 0.3862 -0.5499 13 1 6.0189 1.0985 -1.1459 14 6 7.7819 1.0800 0.0565 15 1 8.6877 0.5252 0.2520 16 6 7.7166 2.4230 0.3618 17 7 8.7859 3.0503 0.8004 18 14 6.1092 3.3513 0.1521 19 1 6.0657 3.9671 -1.1984 20 1 4.9705 2.4101 0.3039 21 1 6.0135 4.4146 1.1843 22 6 7.0665 -0.7601 -1.4440 23 9 7.8152 -1.6645 -0.6830 24 9 5.9590 -1.4164 -1.9915 25 9 7.8616 -0.2478 -2.4747 26 1 -0.3634 0.5813 0.8474 27 1 -0.3633 0.4433 -0.9272 28 1 -0.3634 -1.0245 0.0796 29 1 1.8933 -0.5139 -0.8899 30 1 1.5760 1.9919 0.8190 31 1 3.1225 1.4451 0.1279 32 1 1.7849 1.9180 -0.9470 33 1 2.6827 -0.1469 3.3299 34 1 2.9591 1.1664 2.0647 35 1 6.1234 -0.3556 1.3842 36 1 8.7400 3.9953 1.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928808495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:55 Heat of formation + Delta-G solvation = -177.438291 kcal Electronic energy + Delta-G solvation = -23627.661785 eV Core-core repulsion = 19697.347828 eV Total energy + Delta-G solvation = -3930.313957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.06648 -46.58400 -46.55400 -40.01251 -37.08013 -34.66377 -33.04160 -32.42502 -29.20813 -26.96065 -24.98723 -24.02273 -23.35268 -21.11382 -19.75875 -19.06178 -18.02255 -17.53163 -16.83216 -16.82211 -16.34705 -15.29155 -15.14599 -14.68120 -14.32159 -13.73498 -13.55894 -13.38977 -13.29465 -13.02333 -12.83046 -12.76232 -12.67524 -12.57060 -12.34649 -12.24897 -11.79416 -11.48329 -11.15512 -11.12087 -10.89270 -10.62006 -10.47496 -10.12272 -10.07684 -9.82258 -9.74591 -9.15710 -8.87723 -8.32717 -6.53898 -4.68694 3.04155 3.07565 3.20001 3.25882 3.65075 3.85472 4.04913 4.09136 4.73312 4.82818 4.99922 5.03361 5.16258 5.17908 5.25805 5.34099 5.43272 5.53557 5.66080 5.77818 5.82470 5.94874 6.05823 6.11000 6.15137 6.26808 6.33110 6.45096 6.71534 6.80361 6.89720 7.20254 7.84776 8.34785 8.51519 8.89377 9.01643 10.54439 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.008078 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.135741 B = 3465.270681 C = 4317.116301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.114 4.114 5 H 0.106 0.894 6 C -0.163 4.163 7 C -0.188 4.188 8 H 0.122 0.878 9 C 0.529 3.471 10 O -0.533 6.533 11 N -0.710 5.710 12 C 0.207 3.793 13 H 0.088 0.912 14 C -0.538 4.538 15 H 0.093 0.907 16 C 0.098 3.902 17 N -0.860 5.860 18 Si 0.869 3.131 19 H -0.270 1.270 20 H -0.248 1.248 21 H -0.281 1.281 22 C 0.440 3.560 23 F -0.191 7.191 24 F -0.195 7.195 25 F -0.184 7.184 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -5.325 2.425 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.206 4.206 4 C -0.133 4.133 5 H 0.124 0.876 6 C -0.200 4.200 7 C -0.209 4.209 8 H 0.139 0.861 9 C 0.316 3.684 10 O -0.411 6.411 11 N -0.362 5.362 12 C 0.103 3.897 13 H 0.106 0.894 14 C -0.576 4.576 15 H 0.111 0.889 16 C -0.112 4.112 17 N -0.493 5.493 18 Si 0.694 3.306 19 H -0.196 1.196 20 H -0.172 1.172 21 H -0.207 1.207 22 C 0.384 3.616 23 F -0.173 7.173 24 F -0.177 7.177 25 F -0.165 7.165 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.236 0.764 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.536 -4.972 1.689 12.675 hybrid contribution -0.313 0.193 0.333 0.496 sum -11.849 -4.779 2.022 12.936 Atomic orbital electron populations 1.21862 0.96036 1.00976 1.01211 1.20664 0.93790 0.96412 0.97249 1.22153 1.02972 0.95279 1.00187 1.22435 0.91440 1.01276 0.98144 0.87598 1.23200 1.02717 0.97948 0.96144 1.22337 0.94926 1.02286 1.01350 0.86056 1.19822 0.82944 0.77596 0.88079 1.90643 1.73621 1.51093 1.25713 1.47457 1.07471 1.64551 1.16713 1.19990 0.93236 0.88571 0.87863 0.89440 1.20748 0.97359 0.94910 1.44570 0.88910 1.24990 0.96645 0.96985 0.92534 1.69868 1.28400 1.10933 1.40123 0.86941 0.84311 0.80382 0.78921 1.19562 1.17159 1.20677 1.21631 0.74886 0.84749 0.80330 1.93074 1.77867 1.70440 1.75928 1.93139 1.53754 1.83533 1.87254 1.93104 1.75230 1.87072 1.61132 0.93219 0.92986 0.93161 0.88695 0.94225 0.90705 0.93417 0.88385 0.87791 0.76382 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.16 37.16 0.34 -1.33 16 2 C -0.06 -0.91 2.43 -90.62 -0.22 -1.13 16 3 C -0.15 -2.39 6.98 37.15 0.26 -2.13 16 4 C -0.11 -1.51 5.72 -90.58 -0.52 -2.03 16 5 H 0.11 1.17 8.09 -51.93 -0.42 0.75 16 6 C -0.16 -2.11 9.37 -26.69 -0.25 -2.36 16 7 C -0.19 -2.73 6.19 -91.77 -0.57 -3.30 16 8 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 9 C 0.53 9.90 5.38 -10.98 -0.06 9.84 16 10 O -0.53 -11.20 10.41 5.55 0.06 -11.14 16 11 N -0.71 -13.96 4.64 -54.93 -0.25 -14.21 16 12 C 0.21 4.68 1.40 -69.09 -0.10 4.58 16 13 H 0.09 2.10 5.40 -51.93 -0.28 1.82 16 14 C -0.54 -13.62 8.62 -34.44 -0.30 -13.91 16 15 H 0.09 2.56 7.80 -52.48 -0.41 2.15 16 16 C 0.10 2.54 5.47 -17.82 -0.10 2.45 16 17 N -0.86 -23.60 13.96 55.43 0.77 -22.82 16 18 Si 0.87 19.72 26.93 -169.99 -4.58 15.14 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.25 -5.45 5.17 56.52 0.29 -5.16 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.44 9.76 2.82 37.16 0.10 9.87 16 23 F -0.19 -4.14 16.76 2.25 0.04 -4.10 16 24 F -0.20 -4.27 15.65 2.25 0.04 -4.24 16 25 F -0.18 -4.19 17.05 2.25 0.04 -4.15 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.60 6.63 -51.93 -0.34 1.26 16 30 H 0.04 0.56 7.62 -51.93 -0.40 0.17 16 31 H 0.07 1.41 3.07 -51.93 -0.16 1.26 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.51 5.86 -51.93 -0.30 1.21 16 35 H 0.40 7.16 8.59 -40.82 -0.35 6.81 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -27.67 298.51 -5.24 -32.91 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.44 Total: 7.59 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.40 Total: 0.53 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.52 Total: -37.04 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.06 Total: -11.14 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 0.11 Total: -12.49 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.58 Total: 15.14 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.67 -5.24 -32.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.531 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds