Wall clock time and date at job start Tue Mar 31 2020 00:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47271 * 2 1 4 4 C 1.53002 * 109.46802 * 119.99848 * 2 1 3 5 5 H 1.09000 * 115.54934 * 30.88351 * 4 2 1 6 6 C 1.53077 * 117.51331 * 245.16290 * 4 2 1 7 7 C 1.52996 * 117.50038 * 176.55158 * 4 2 1 8 8 H 1.08997 * 117.50214 * 215.00505 * 7 4 2 9 9 C 1.50706 * 117.49869 * 0.02562 * 7 4 2 10 10 O 1.21284 * 119.99468 * 342.13737 * 9 7 4 11 11 N 1.34778 * 120.00147 * 162.13698 * 9 7 4 12 12 C 1.46500 * 119.99942 * 180.02562 * 11 9 7 13 13 H 1.08998 * 109.47062 * 34.99389 * 12 11 9 14 14 C 1.50692 * 109.47031 * 154.99777 * 12 11 9 15 15 H 1.08005 * 120.00091 * 90.02001 * 14 12 11 16 16 C 1.37879 * 120.00505 * 270.01709 * 14 12 11 17 17 N 1.31511 * 120.00201 * 184.90542 * 16 14 12 18 18 Si 1.86803 * 119.99518 * 4.90273 * 16 14 12 19 19 H 1.48492 * 109.47262 * 267.38105 * 18 16 14 20 20 H 1.48505 * 109.47138 * 27.38520 * 18 16 14 21 21 H 1.48501 * 109.46821 * 147.38213 * 18 16 14 22 22 C 1.52999 * 109.46926 * 275.00148 * 12 11 9 23 23 F 1.39912 * 109.46863 * 299.14574 * 22 12 11 24 24 F 1.39894 * 109.47502 * 59.14653 * 22 12 11 25 25 F 1.39899 * 109.47154 * 179.15012 * 22 12 11 26 26 H 1.08997 * 109.47577 * 304.45008 * 1 2 3 27 27 H 1.09004 * 109.46727 * 64.44520 * 1 2 3 28 28 H 1.08998 * 109.47296 * 184.44213 * 1 2 3 29 29 H 1.08998 * 109.47071 * 239.99328 * 2 1 3 30 30 H 1.08994 * 109.47348 * 52.84864 * 3 2 1 31 31 H 1.08997 * 109.47408 * 172.85231 * 3 2 1 32 32 H 1.09000 * 109.46911 * 292.84792 * 3 2 1 33 33 H 1.08996 * 117.49810 * 145.03506 * 6 4 2 34 34 H 1.09005 * 117.51076 * 359.97438 * 6 4 2 35 35 H 0.96998 * 119.99604 * 359.97438 * 11 9 7 36 36 H 0.97002 * 119.99621 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.4009 -1.5206 1.6244 6 6 2.8133 0.1075 2.2781 7 6 3.5526 -0.8992 1.3943 8 1 3.9087 -1.8157 1.8648 9 6 4.4263 -0.3502 0.2960 10 8 3.9470 -0.0903 -0.7873 11 7 5.7403 -0.1480 0.5176 12 6 6.5895 0.3862 -0.5499 13 1 6.0189 1.0985 -1.1459 14 6 7.7819 1.0800 0.0565 15 1 8.6877 0.5252 0.2520 16 6 7.7166 2.4230 0.3618 17 7 8.7859 3.0503 0.8004 18 14 6.1092 3.3513 0.1521 19 1 6.0657 3.9671 -1.1984 20 1 4.9705 2.4101 0.3039 21 1 6.0135 4.4146 1.1843 22 6 7.0665 -0.7601 -1.4440 23 9 7.8152 -1.6645 -0.6830 24 9 5.9590 -1.4164 -1.9915 25 9 7.8616 -0.2478 -2.4747 26 1 -0.3634 0.5813 0.8474 27 1 -0.3633 0.4433 -0.9272 28 1 -0.3634 -1.0245 0.0796 29 1 1.8933 -0.5139 -0.8899 30 1 1.5760 1.9919 0.8190 31 1 3.1225 1.4451 0.1279 32 1 1.7849 1.9180 -0.9470 33 1 2.6827 -0.1469 3.3299 34 1 2.9591 1.1664 2.0647 35 1 6.1234 -0.3556 1.3842 36 1 8.7400 3.9953 1.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928808495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:54 Heat of formation + Delta-G solvation = -194.019506 kcal Electronic energy + Delta-G solvation = -23628.380801 eV Core-core repulsion = 19697.347828 eV Total energy + Delta-G solvation = -3931.032972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.88823 -48.39682 -48.38123 -41.35719 -38.41924 -36.37937 -34.55045 -33.92335 -30.96155 -28.06917 -26.92640 -25.38723 -24.35564 -22.85617 -21.25166 -20.30728 -19.71496 -19.34271 -18.63136 -18.48822 -17.91153 -16.98008 -16.49221 -15.96212 -15.71964 -15.41116 -15.29375 -15.02537 -14.85106 -14.81847 -14.60660 -14.58327 -14.50566 -13.86187 -13.66649 -13.58009 -13.20687 -12.96299 -12.61569 -12.57701 -12.23736 -12.04083 -11.82667 -11.75578 -11.56364 -11.21535 -11.03707 -10.89748 -10.35985 -9.97261 -8.54989 -6.73221 1.24194 1.32136 1.42239 1.61474 2.04032 2.17081 2.19288 2.86316 2.93468 3.30515 3.34453 3.51204 3.71481 3.92056 3.99395 4.15243 4.29995 4.38381 4.48025 4.55761 4.79727 4.82687 4.91069 4.95620 4.98814 5.10151 5.13831 5.25303 5.38328 5.43168 5.61201 5.69005 5.87220 6.43200 6.79622 6.99618 7.40626 8.57333 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.008078 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.135741 B = 3465.270681 C = 4317.116301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.108 4.108 5 H 0.138 0.862 6 C -0.150 4.150 7 C -0.200 4.200 8 H 0.148 0.852 9 C 0.525 3.475 10 O -0.558 6.558 11 N -0.711 5.711 12 C 0.217 3.783 13 H 0.075 0.925 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.060 3.940 17 N -0.902 5.902 18 Si 0.924 3.076 19 H -0.277 1.277 20 H -0.241 1.241 21 H -0.273 1.273 22 C 0.441 3.559 23 F -0.187 7.187 24 F -0.191 7.191 25 F -0.189 7.189 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -6.121 3.748 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 C -0.204 4.204 4 C -0.126 4.126 5 H 0.155 0.845 6 C -0.187 4.187 7 C -0.221 4.221 8 H 0.166 0.834 9 C 0.313 3.687 10 O -0.437 6.437 11 N -0.363 5.363 12 C 0.112 3.888 13 H 0.093 0.907 14 C -0.576 4.576 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.747 3.253 19 H -0.202 1.202 20 H -0.164 1.164 21 H -0.198 1.198 22 C 0.385 3.615 23 F -0.169 7.169 24 F -0.173 7.173 25 F -0.171 7.171 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.150 0.850 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.032 -5.787 3.029 15.478 hybrid contribution 0.470 0.382 -0.135 0.620 sum -13.562 -5.405 2.894 14.884 Atomic orbital electron populations 1.21791 0.93601 1.02292 1.01688 1.20621 0.95830 0.95026 0.96930 1.22114 1.01110 0.96873 1.00308 1.22589 0.90623 1.01875 0.97509 0.84466 1.23290 1.01077 0.96616 0.97718 1.22349 0.95120 1.03795 1.00856 0.83425 1.20525 0.82460 0.76760 0.88947 1.90644 1.73851 1.51948 1.27246 1.47073 1.07969 1.64935 1.16313 1.19630 0.92440 0.88582 0.88183 0.90690 1.20683 0.97365 0.95014 1.44572 0.91898 1.25574 0.99040 0.97670 0.92313 1.69946 1.30185 1.11531 1.42006 0.86098 0.81243 0.79455 0.78494 1.20250 1.16389 1.19845 1.21574 0.74906 0.84838 0.80192 1.93080 1.77776 1.70232 1.75808 1.93144 1.53548 1.83413 1.87188 1.93093 1.75412 1.87180 1.61387 0.91990 0.93206 0.91530 0.91622 0.92524 0.93648 0.94425 0.85048 0.89557 0.75273 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.16 71.98 0.66 -2.09 16 2 C -0.07 -1.76 2.43 -10.79 -0.03 -1.79 16 3 C -0.15 -4.52 6.98 71.98 0.50 -4.02 16 4 C -0.11 -2.44 5.72 -10.77 -0.06 -2.50 16 5 H 0.14 2.30 8.09 -2.39 -0.02 2.28 16 6 C -0.15 -3.32 9.37 30.62 0.29 -3.03 16 7 C -0.20 -5.22 6.19 -11.54 -0.07 -5.29 16 8 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 9 C 0.52 18.91 5.38 87.66 0.47 19.38 16 10 O -0.56 -23.15 10.41 -3.04 -0.03 -23.19 16 11 N -0.71 -27.33 4.64 -446.10 -2.07 -29.40 16 12 C 0.22 9.83 1.40 44.24 0.06 9.89 16 13 H 0.08 3.61 5.40 -2.39 -0.01 3.60 16 14 C -0.54 -27.68 8.62 25.60 0.22 -27.46 16 15 H 0.06 3.57 7.80 -2.91 -0.02 3.55 16 16 C 0.06 3.14 5.47 84.66 0.46 3.60 16 17 N -0.90 -50.30 13.96 21.45 0.30 -50.00 16 18 Si 0.92 41.02 26.93 68.60 1.85 42.87 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.24 -10.31 5.17 99.48 0.51 -9.79 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.44 19.55 2.82 71.98 0.20 19.75 16 23 F -0.19 -8.06 16.76 44.97 0.75 -7.30 16 24 F -0.19 -8.29 15.65 44.97 0.70 -7.58 16 25 F -0.19 -8.68 17.05 44.97 0.77 -7.91 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 2.16 6.63 -2.39 -0.02 2.14 16 30 H 0.06 1.50 7.62 -2.39 -0.02 1.48 16 31 H 0.04 1.66 3.07 -2.39 -0.01 1.66 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.27 5.86 -2.38 -0.01 2.25 16 35 H 0.41 14.24 8.59 -92.71 -0.80 13.45 16 36 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -60.27 298.51 5.11 -55.16 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.13 Total: 20.91 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 2.71 Total: 6.45 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.77 Total: -79.40 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.03 Total: -23.19 kcal Atomic # 9 Polarization: -25.02 SS G_CDS: 2.22 Total: -22.80 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.85 Total: 42.87 kcal Total: -60.27 5.11 -55.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.861 kcal (2) G-P(sol) polarization free energy of solvation -60.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds