Wall clock time and date at job start Tue Mar 31 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47285 * 2 1 4 4 C 1.52995 * 109.47333 * 120.00270 * 2 1 3 5 5 H 1.09002 * 115.55189 * 274.42064 * 4 2 1 6 6 C 1.53005 * 117.50065 * 128.74479 * 4 2 1 7 7 C 1.53005 * 117.49929 * 60.08355 * 4 2 1 8 8 H 1.08999 * 117.49753 * 359.97438 * 7 4 2 9 9 C 1.50699 * 117.50224 * 214.97984 * 7 4 2 10 10 O 1.21283 * 119.99709 * 0.02562 * 9 7 4 11 11 N 1.34774 * 120.00244 * 179.97438 * 9 7 4 12 12 C 1.46494 * 120.00253 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47135 * 325.00643 * 12 11 9 14 14 C 1.50699 * 109.47631 * 204.99902 * 12 11 9 15 15 H 1.07997 * 120.00245 * 265.32931 * 14 12 11 16 16 C 1.37880 * 119.99530 * 85.31835 * 14 12 11 17 17 N 1.31513 * 119.99959 * 185.04926 * 16 14 12 18 18 Si 1.86796 * 120.00126 * 5.06125 * 16 14 12 19 19 H 1.48497 * 109.47757 * 84.63882 * 18 16 14 20 20 H 1.48504 * 109.47152 * 204.64014 * 18 16 14 21 21 H 1.48506 * 109.46853 * 324.63727 * 18 16 14 22 22 C 1.53008 * 109.46978 * 85.00265 * 12 11 9 23 23 F 1.39893 * 109.46967 * 64.13649 * 22 12 11 24 24 F 1.39900 * 109.46751 * 184.13678 * 22 12 11 25 25 F 1.39897 * 109.46936 * 304.13539 * 22 12 11 26 26 H 1.09000 * 109.47127 * 59.99459 * 1 2 3 27 27 H 1.08998 * 109.47416 * 299.99836 * 1 2 3 28 28 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47187 * 240.00624 * 2 1 3 30 30 H 1.09002 * 109.46944 * 60.00497 * 3 2 1 31 31 H 1.09005 * 109.47113 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47479 * 300.00325 * 3 2 1 33 33 H 1.08991 * 117.49825 * 0.02562 * 6 4 2 34 34 H 1.08997 * 117.49916 * 145.02427 * 6 4 2 35 35 H 0.96999 * 119.99441 * 0.02562 * 11 9 7 36 36 H 0.96998 * 120.00634 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1252 -0.1065 2.1452 6 6 3.0763 -1.8294 1.0515 7 6 1.6373 -2.1859 1.4332 8 1 1.0087 -2.6354 0.6645 9 6 1.3896 -2.6681 2.8393 10 8 1.5113 -1.9035 3.7728 11 7 1.0320 -3.9488 3.0593 12 6 0.7907 -4.4174 4.4261 13 1 1.4765 -3.9156 5.1087 14 6 1.0142 -5.9062 4.4937 15 1 0.1799 -6.5831 4.3842 16 6 2.2841 -6.4041 4.6950 17 7 2.4958 -7.7015 4.6550 18 14 3.7039 -5.2359 5.0249 19 1 3.7489 -4.9077 6.4725 20 1 4.9797 -5.8817 4.6239 21 1 3.5120 -3.9896 4.2405 22 6 -0.6514 -4.0996 4.8271 23 9 -1.5314 -4.8179 4.0106 24 9 -0.8543 -4.4614 6.1632 25 9 -0.8866 -2.7291 4.6741 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 3.3950 -2.0443 0.0316 34 1 3.8431 -1.9439 1.8176 35 1 0.9344 -4.5601 2.3126 36 1 3.3890 -8.0519 4.7970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928808496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:03 Heat of formation + Delta-G solvation = -192.400956 kcal Electronic energy + Delta-G solvation = -22980.207142 eV Core-core repulsion = 19049.244356 eV Total energy + Delta-G solvation = -3930.962787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -49.08163 -46.59339 -46.57288 -39.60038 -37.36312 -34.75554 -33.24654 -32.51665 -29.28161 -27.23057 -24.99266 -24.22140 -22.81345 -21.16570 -19.94480 -19.51636 -18.16675 -17.54266 -16.94649 -16.71000 -16.34919 -15.44629 -14.89894 -14.65061 -14.10790 -13.87067 -13.57668 -13.44702 -13.15689 -13.10811 -13.01497 -12.77636 -12.75811 -12.63174 -12.55582 -12.24802 -12.16920 -11.79432 -11.34460 -11.20765 -11.09883 -10.70169 -10.67964 -10.21254 -10.12421 -9.98253 -9.79742 -9.33769 -8.96135 -8.40170 -6.53851 -4.68478 2.97566 3.09569 3.19777 3.28442 3.63650 3.84800 4.06708 4.10642 4.61889 4.82009 4.84704 4.96062 5.08323 5.12432 5.17737 5.25984 5.27928 5.39403 5.56660 5.58700 5.61674 5.79259 5.80882 5.84769 6.00293 6.07363 6.15887 6.26027 6.34761 6.45024 6.89097 7.17103 7.85064 8.34515 8.51718 8.88727 9.01987 10.54588 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.006537 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.453770 B = 4282.311929 C = 5211.414111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 C -0.143 4.143 4 C -0.116 4.116 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.184 4.184 8 H 0.120 0.880 9 C 0.531 3.469 10 O -0.547 6.547 11 N -0.709 5.709 12 C 0.205 3.795 13 H 0.087 0.913 14 C -0.539 4.539 15 H 0.094 0.906 16 C 0.100 3.900 17 N -0.861 5.861 18 Si 0.869 3.131 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.253 1.253 22 C 0.441 3.559 23 F -0.190 7.190 24 F -0.185 7.185 25 F -0.195 7.195 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.401 0.599 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 11.208 -9.073 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.135 4.135 5 H 0.134 0.866 6 C -0.189 4.189 7 C -0.205 4.205 8 H 0.138 0.862 9 C 0.317 3.683 10 O -0.425 6.425 11 N -0.361 5.361 12 C 0.102 3.898 13 H 0.104 0.896 14 C -0.577 4.577 15 H 0.112 0.888 16 C -0.110 4.110 17 N -0.493 5.493 18 Si 0.694 3.306 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.177 1.177 22 C 0.385 3.615 23 F -0.171 7.171 24 F -0.166 7.166 25 F -0.177 7.177 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.237 0.763 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.349 11.576 -8.365 14.286 hybrid contribution 0.432 0.044 -0.082 0.442 sum 0.084 11.619 -8.447 14.365 Atomic orbital electron populations 1.21820 0.94865 1.02087 1.01592 1.20722 0.95852 0.95955 0.95866 1.21797 1.01041 0.95552 1.01684 1.22434 1.01435 0.89623 1.00010 0.86604 1.23051 0.91001 1.02243 1.02573 1.22369 1.00790 1.00568 0.96823 0.86199 1.19855 0.76461 0.82676 0.89326 1.90637 1.52292 1.55073 1.44520 1.47395 1.68141 1.10087 1.10442 1.19988 0.86874 0.98813 0.84121 0.89581 1.20769 0.96828 0.86776 1.53292 0.88767 1.24958 0.98588 0.95193 0.92242 1.69860 1.23291 1.12017 1.44181 0.86919 0.81404 0.81921 0.80318 1.19269 1.20660 1.17725 1.21571 0.92379 0.73002 0.74545 1.93076 1.72592 1.78383 1.73065 1.93100 1.96000 1.91690 1.35848 1.93138 1.95882 1.33233 1.95399 0.92905 0.92401 0.92493 0.91198 0.92497 0.92604 0.92779 0.88118 0.88504 0.76296 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.03 37.15 0.34 -1.20 16 2 C -0.07 -0.69 3.07 -90.63 -0.28 -0.96 16 3 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 4 C -0.12 -1.55 4.66 -90.62 -0.42 -1.97 16 5 H 0.12 1.77 7.64 -51.93 -0.40 1.37 16 6 C -0.15 -1.99 9.88 -26.69 -0.26 -2.25 16 7 C -0.18 -2.76 5.40 -91.73 -0.50 -3.25 16 8 H 0.12 1.53 7.61 -51.93 -0.40 1.14 16 9 C 0.53 10.48 6.91 -10.99 -0.08 10.41 16 10 O -0.55 -12.54 14.86 5.56 0.08 -12.46 16 11 N -0.71 -14.49 4.93 -54.93 -0.27 -14.77 16 12 C 0.21 4.78 1.45 -69.08 -0.10 4.68 16 13 H 0.09 2.13 5.33 -51.93 -0.28 1.85 16 14 C -0.54 -13.82 8.68 -34.44 -0.30 -14.12 16 15 H 0.09 2.62 7.69 -52.49 -0.40 2.21 16 16 C 0.10 2.61 5.47 -17.82 -0.10 2.51 16 17 N -0.86 -23.64 13.96 55.43 0.77 -22.87 16 18 Si 0.87 20.17 26.92 -169.99 -4.58 15.60 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.25 -5.89 6.83 56.52 0.39 -5.51 16 22 C 0.44 9.94 2.83 37.16 0.11 10.04 16 23 F -0.19 -4.15 16.65 2.25 0.04 -4.11 16 24 F -0.18 -4.22 17.12 2.25 0.04 -4.18 16 25 F -0.19 -4.35 15.57 2.25 0.04 -4.32 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.62 7.29 -51.93 -0.38 0.24 16 29 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.40 7.40 8.59 -40.82 -0.35 7.05 16 36 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -28.77 314.86 -5.10 -33.87 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.72 Total: 5.60 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.25 Total: 2.89 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.50 Total: -37.64 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 0.11 Total: -12.61 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.58 Total: 15.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.77 -5.10 -33.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.533 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds