Wall clock time and date at job start Tue Mar 31 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47285 * 2 1 4 4 C 1.52995 * 109.47333 * 120.00270 * 2 1 3 5 5 H 1.09002 * 115.55189 * 274.42064 * 4 2 1 6 6 C 1.53005 * 117.50065 * 128.74479 * 4 2 1 7 7 C 1.53005 * 117.49929 * 60.08355 * 4 2 1 8 8 H 1.08999 * 117.49753 * 359.97438 * 7 4 2 9 9 C 1.50699 * 117.50224 * 214.97984 * 7 4 2 10 10 O 1.21283 * 119.99709 * 0.02562 * 9 7 4 11 11 N 1.34774 * 120.00244 * 179.97438 * 9 7 4 12 12 C 1.46494 * 120.00253 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47135 * 325.00643 * 12 11 9 14 14 C 1.50699 * 109.47631 * 204.99902 * 12 11 9 15 15 H 1.07997 * 120.00245 * 265.32931 * 14 12 11 16 16 C 1.37880 * 119.99530 * 85.31835 * 14 12 11 17 17 N 1.31513 * 119.99959 * 185.04926 * 16 14 12 18 18 Si 1.86796 * 120.00126 * 5.06125 * 16 14 12 19 19 H 1.48497 * 109.47757 * 84.63882 * 18 16 14 20 20 H 1.48504 * 109.47152 * 204.64014 * 18 16 14 21 21 H 1.48506 * 109.46853 * 324.63727 * 18 16 14 22 22 C 1.53008 * 109.46978 * 85.00265 * 12 11 9 23 23 F 1.39893 * 109.46967 * 64.13649 * 22 12 11 24 24 F 1.39900 * 109.46751 * 184.13678 * 22 12 11 25 25 F 1.39897 * 109.46936 * 304.13539 * 22 12 11 26 26 H 1.09000 * 109.47127 * 59.99459 * 1 2 3 27 27 H 1.08998 * 109.47416 * 299.99836 * 1 2 3 28 28 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47187 * 240.00624 * 2 1 3 30 30 H 1.09002 * 109.46944 * 60.00497 * 3 2 1 31 31 H 1.09005 * 109.47113 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47479 * 300.00325 * 3 2 1 33 33 H 1.08991 * 117.49825 * 0.02562 * 6 4 2 34 34 H 1.08997 * 117.49916 * 145.02427 * 6 4 2 35 35 H 0.96999 * 119.99441 * 0.02562 * 11 9 7 36 36 H 0.96998 * 120.00634 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1252 -0.1065 2.1452 6 6 3.0763 -1.8294 1.0515 7 6 1.6373 -2.1859 1.4332 8 1 1.0087 -2.6354 0.6645 9 6 1.3896 -2.6681 2.8393 10 8 1.5113 -1.9035 3.7728 11 7 1.0320 -3.9488 3.0593 12 6 0.7907 -4.4174 4.4261 13 1 1.4765 -3.9156 5.1087 14 6 1.0142 -5.9062 4.4937 15 1 0.1799 -6.5831 4.3842 16 6 2.2841 -6.4041 4.6950 17 7 2.4958 -7.7015 4.6550 18 14 3.7039 -5.2359 5.0249 19 1 3.7489 -4.9077 6.4725 20 1 4.9797 -5.8817 4.6239 21 1 3.5120 -3.9896 4.2405 22 6 -0.6514 -4.0996 4.8271 23 9 -1.5314 -4.8179 4.0106 24 9 -0.8543 -4.4614 6.1632 25 9 -0.8866 -2.7291 4.6741 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 3.3950 -2.0443 0.0316 34 1 3.8431 -1.9439 1.8176 35 1 0.9344 -4.5601 2.3126 36 1 3.3890 -8.0519 4.7970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928808496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:00 Heat of formation + Delta-G solvation = -209.678522 kcal Electronic energy + Delta-G solvation = -22980.956354 eV Core-core repulsion = 19049.244356 eV Total energy + Delta-G solvation = -3931.711998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -50.92625 -48.43760 -48.41150 -41.04509 -38.60026 -36.54784 -34.49464 -34.17362 -31.09212 -27.99370 -26.95330 -25.58136 -23.79041 -22.92222 -21.36503 -20.64918 -19.96346 -19.37925 -18.71120 -18.48492 -18.04452 -17.07621 -16.17997 -16.06842 -15.47908 -15.43307 -15.23541 -15.12369 -14.88932 -14.82347 -14.61596 -14.54598 -14.45404 -13.98461 -13.76249 -13.55139 -13.38942 -13.05113 -12.98271 -12.58005 -12.17661 -12.06292 -12.02234 -11.87680 -11.54497 -11.21501 -11.08064 -10.99694 -10.77421 -10.14036 -8.56651 -6.74806 1.23514 1.30165 1.39518 1.49186 1.97251 2.13822 2.15791 2.85614 2.93073 3.21858 3.30768 3.43629 3.74199 3.78969 3.87248 4.11438 4.21347 4.41025 4.43477 4.49960 4.67988 4.85134 4.87004 4.91682 4.97681 5.04656 5.08822 5.23908 5.29600 5.45667 5.46720 5.56325 5.85753 6.41697 6.71421 6.98074 7.30348 8.55816 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.006537 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.453770 B = 4282.311929 C = 5211.414111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.143 4.143 4 C -0.110 4.110 5 H 0.091 0.909 6 C -0.138 4.138 7 C -0.196 4.196 8 H 0.147 0.853 9 C 0.526 3.474 10 O -0.583 6.583 11 N -0.708 5.708 12 C 0.212 3.788 13 H 0.073 0.927 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.065 3.935 17 N -0.898 5.898 18 Si 0.922 3.078 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.256 1.256 22 C 0.443 3.557 23 F -0.185 7.185 24 F -0.187 7.187 25 F -0.192 7.192 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 12.478 -11.081 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 C -0.200 4.200 4 C -0.129 4.129 5 H 0.109 0.891 6 C -0.175 4.175 7 C -0.217 4.217 8 H 0.165 0.835 9 C 0.315 3.685 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.107 3.893 13 H 0.091 0.909 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.180 1.180 22 C 0.387 3.613 23 F -0.166 7.166 24 F -0.169 7.169 25 F -0.174 7.174 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.250 0.750 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.323 12.843 -10.397 16.527 hybrid contribution 0.148 -0.315 0.556 0.656 sum 0.471 12.528 -9.841 15.938 Atomic orbital electron populations 1.21834 0.94975 1.01851 1.01796 1.20754 0.95682 0.96463 0.94924 1.21794 1.01334 0.94803 1.02056 1.22490 1.01198 0.88712 1.00479 0.89120 1.23186 0.89389 1.01045 1.03886 1.22360 1.03055 1.02177 0.94097 0.83549 1.20618 0.75086 0.81688 0.91158 1.90619 1.53631 1.55769 1.46298 1.47042 1.68453 1.10998 1.09462 1.19683 0.87020 0.97218 0.85356 0.90922 1.20689 0.96066 0.87577 1.53473 0.91548 1.25489 1.00447 0.96147 0.92042 1.69925 1.24186 1.13380 1.45769 0.86098 0.79446 0.80063 0.79794 1.19571 1.19436 1.18015 1.21461 0.92239 0.73129 0.74496 1.93083 1.72367 1.78299 1.72901 1.93093 1.96009 1.91729 1.36072 1.93144 1.95842 1.33002 1.95381 0.90936 0.94010 0.92950 0.89135 0.93543 0.92176 0.91035 0.84595 0.90168 0.75029 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.03 71.98 0.65 -2.07 16 2 C -0.06 -1.07 3.07 -10.80 -0.03 -1.10 16 3 C -0.14 -2.25 9.18 71.98 0.66 -1.59 16 4 C -0.11 -2.70 4.66 -10.79 -0.05 -2.75 16 5 H 0.09 2.72 7.64 -2.39 -0.02 2.70 16 6 C -0.14 -3.22 9.88 30.62 0.30 -2.92 16 7 C -0.20 -5.42 5.40 -11.51 -0.06 -5.49 16 8 H 0.15 3.26 7.61 -2.39 -0.02 3.24 16 9 C 0.53 20.27 6.91 87.66 0.61 20.87 16 10 O -0.58 -26.62 14.86 -3.04 -0.05 -26.66 16 11 N -0.71 -28.38 4.93 -446.10 -2.20 -30.58 16 12 C 0.21 9.86 1.45 44.25 0.06 9.92 16 13 H 0.07 3.60 5.33 -2.39 -0.01 3.59 16 14 C -0.54 -27.95 8.68 25.60 0.22 -27.73 16 15 H 0.07 3.77 7.69 -2.91 -0.02 3.75 16 16 C 0.07 3.41 5.47 84.66 0.46 3.87 16 17 N -0.90 -49.61 13.96 21.45 0.30 -49.31 16 18 Si 0.92 41.52 26.92 68.60 1.85 43.37 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.26 -11.54 6.83 99.48 0.68 -10.86 16 22 C 0.44 19.89 2.83 71.98 0.20 20.09 16 23 F -0.18 -8.03 16.65 44.97 0.75 -7.28 16 24 F -0.19 -8.56 17.12 44.97 0.77 -7.79 16 25 F -0.19 -8.51 15.57 44.97 0.70 -7.81 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 1.01 7.29 -2.39 -0.02 0.99 16 29 H 0.09 1.30 7.90 -2.39 -0.02 1.28 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.14 2.25 8.05 -2.39 -0.02 2.23 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.41 14.76 8.59 -92.71 -0.80 13.96 16 36 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -61.67 314.86 5.43 -56.24 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.28 Total: 18.70 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 3.03 Total: 11.12 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.90 Total: -79.89 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 9 Polarization: -25.11 SS G_CDS: 2.22 Total: -22.89 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.85 Total: 43.37 kcal Total: -61.67 5.43 -56.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.439 kcal (2) G-P(sol) polarization free energy of solvation -61.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds