Wall clock time and date at job start Tue Mar 31 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47126 * 2 1 4 4 C 1.52995 * 109.47377 * 120.00098 * 2 1 3 5 5 H 1.08997 * 115.54849 * 28.24532 * 4 2 1 6 6 C 1.53075 * 117.51490 * 242.53106 * 4 2 1 7 7 C 1.53001 * 59.98451 * 252.51663 * 6 4 2 8 8 H 1.08995 * 117.49989 * 252.49905 * 7 6 4 9 9 C 1.50697 * 117.49551 * 107.49684 * 7 6 4 10 10 O 1.21278 * 120.00443 * 269.00872 * 9 7 6 11 11 N 1.34776 * 119.99945 * 89.01556 * 9 7 6 12 12 C 1.46498 * 120.00257 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47052 * 324.99910 * 12 11 9 14 14 C 1.50696 * 109.47610 * 204.99953 * 12 11 9 15 15 H 1.08006 * 119.99429 * 359.97438 * 14 12 11 16 16 C 1.37870 * 120.00428 * 179.72458 * 14 12 11 17 17 N 1.31520 * 120.00049 * 0.27497 * 16 14 12 18 18 Si 1.86803 * 120.00360 * 180.27237 * 16 14 12 19 19 H 1.48496 * 109.46785 * 89.99894 * 18 16 14 20 20 H 1.48497 * 109.47312 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.46877 * 330.00244 * 18 16 14 22 22 C 1.53000 * 109.47005 * 84.99775 * 12 11 9 23 23 F 1.39905 * 109.47324 * 180.02562 * 22 12 11 24 24 F 1.39904 * 109.47229 * 299.99976 * 22 12 11 25 25 F 1.39897 * 109.47400 * 60.00084 * 22 12 11 26 26 H 1.08991 * 109.47459 * 300.03022 * 1 2 3 27 27 H 1.09005 * 109.47121 * 60.02667 * 1 2 3 28 28 H 1.09005 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47368 * 239.99927 * 2 1 3 30 30 H 1.08994 * 109.46878 * 306.37679 * 3 2 1 31 31 H 1.08997 * 109.47080 * 66.37843 * 3 2 1 32 32 H 1.09000 * 109.46813 * 186.37857 * 3 2 1 33 33 H 1.09003 * 117.49894 * 145.03233 * 6 4 2 34 34 H 1.09004 * 117.51073 * 359.97438 * 6 4 2 35 35 H 0.97006 * 120.00022 * 359.97438 * 11 9 7 36 36 H 0.97002 * 120.00015 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.3800 -1.4903 1.6504 6 6 2.8662 0.0929 2.2481 7 6 3.5478 -0.9539 1.3646 8 1 3.8797 -1.8759 1.8417 9 6 4.4169 -0.4549 0.2391 10 8 3.9391 -0.2710 -0.8603 11 7 5.7253 -0.2132 0.4543 12 6 6.5703 0.2712 -0.6400 13 1 6.2437 -0.1784 -1.5777 14 6 8.0041 -0.1084 -0.3734 15 1 8.2603 -0.6555 0.5219 16 6 8.9881 0.2381 -1.2749 17 7 8.6761 0.9048 -2.3648 18 14 10.7643 -0.2391 -0.9482 19 1 11.0359 -1.5724 -1.5428 20 1 11.6680 0.7687 -1.5588 21 1 11.0009 -0.2929 0.5169 22 6 6.4555 1.7938 -0.7372 23 9 7.2621 2.2565 -1.7826 24 9 5.1244 2.1463 -0.9848 25 9 6.8746 2.3710 0.4662 26 1 -0.3634 0.5142 0.8896 27 1 -0.3634 0.5134 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.5865 1.9882 -0.8274 31 1 1.7729 1.9224 0.9415 32 1 3.1240 1.4446 -0.1142 33 1 2.7493 -0.1406 3.3063 34 1 3.0466 1.1424 2.0150 35 1 6.1074 -0.3601 1.3337 36 1 9.3685 1.1489 -2.9989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928808497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:08 Heat of formation + Delta-G solvation = -156.899466 kcal Electronic energy + Delta-G solvation = -23736.950532 eV Core-core repulsion = 19807.527206 eV Total energy + Delta-G solvation = -3929.423326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -48.36327 -46.02163 -45.62216 -39.89459 -37.02325 -34.55464 -33.02894 -32.37902 -28.54062 -26.90095 -24.67819 -23.89335 -23.31383 -21.21120 -19.67683 -19.01127 -17.39193 -16.84127 -16.66151 -16.53274 -15.82979 -15.16124 -14.92976 -14.64928 -14.36476 -13.66435 -13.27217 -12.94348 -12.82759 -12.54430 -12.45862 -12.41195 -12.28980 -12.16029 -11.97049 -11.81795 -11.45825 -11.19339 -11.05528 -10.88279 -10.83914 -10.64753 -10.41451 -10.38309 -10.09305 -9.74898 -9.66098 -8.86755 -8.72696 -8.22152 -6.25042 -4.48843 3.12491 3.17925 3.24257 3.26987 3.72133 4.03048 4.21383 4.54435 4.77382 4.91839 5.01560 5.08935 5.26693 5.44722 5.51188 5.62078 5.77402 5.82905 5.86270 5.87169 5.97513 6.09385 6.16335 6.20591 6.22194 6.33469 6.49629 6.77622 6.90569 6.95762 7.23043 7.47047 7.62267 8.36019 8.49485 8.93475 9.19537 10.66797 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.005826 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.999674 B = 4804.515942 C = 5153.983728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.155 4.155 4 C -0.112 4.112 5 H 0.106 0.894 6 C -0.165 4.165 7 C -0.187 4.187 8 H 0.122 0.878 9 C 0.534 3.466 10 O -0.526 6.526 11 N -0.709 5.709 12 C 0.245 3.755 13 H 0.085 0.915 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.840 5.840 18 Si 0.915 3.085 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.270 1.270 22 C 0.417 3.583 23 F -0.137 7.137 24 F -0.217 7.217 25 F -0.210 7.210 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.399 0.601 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.229 -1.954 7.347 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.211 4.211 4 C -0.131 4.131 5 H 0.124 0.876 6 C -0.202 4.202 7 C -0.208 4.208 8 H 0.140 0.860 9 C 0.320 3.680 10 O -0.403 6.403 11 N -0.358 5.358 12 C 0.139 3.861 13 H 0.102 0.898 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.741 3.259 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.361 3.639 23 F -0.119 7.119 24 F -0.199 7.199 25 F -0.191 7.191 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.232 0.768 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.481 -1.687 6.337 11.528 hybrid contribution 1.184 0.022 0.644 1.348 sum -8.297 -1.665 6.981 10.970 Atomic orbital electron populations 1.21856 0.96071 1.00934 1.01198 1.20733 0.93902 0.96554 0.97428 1.22154 1.03889 0.95192 0.99909 1.22431 0.91025 1.01347 0.98284 0.87591 1.23244 1.02956 0.97737 0.96278 1.22270 0.95668 1.02047 1.00808 0.85979 1.19621 0.82313 0.77486 0.88610 1.90651 1.72914 1.51651 1.25056 1.46088 1.08563 1.66358 1.14776 1.19702 0.92165 0.84506 0.89712 0.89774 1.20883 0.89096 1.40052 1.08870 0.90499 1.25085 1.00412 0.93979 0.94924 1.70397 1.33937 1.33388 1.09622 0.86217 0.82535 0.78354 0.78771 1.20194 1.20792 1.19514 1.23145 0.71958 0.95154 0.73645 1.93403 1.71298 1.90459 1.56702 1.93042 1.38279 1.94198 1.94336 1.92988 1.90440 1.87472 1.48248 0.93276 0.92933 0.93213 0.88334 0.93470 0.93901 0.90179 0.88450 0.87631 0.76773 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.15 37.16 0.34 -1.35 16 2 C -0.07 -1.00 2.42 -90.62 -0.22 -1.22 16 3 C -0.15 -2.50 7.38 37.16 0.27 -2.23 16 4 C -0.11 -1.47 5.73 -90.58 -0.52 -1.99 16 5 H 0.11 1.16 8.07 -51.93 -0.42 0.74 16 6 C -0.16 -2.07 9.24 -26.69 -0.25 -2.32 16 7 C -0.19 -2.68 6.18 -91.77 -0.57 -3.24 16 8 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 9 C 0.53 10.15 5.78 -10.99 -0.06 10.09 16 10 O -0.53 -11.55 10.73 5.56 0.06 -11.49 16 11 N -0.71 -14.22 4.98 -54.94 -0.27 -14.50 16 12 C 0.24 5.99 2.21 -69.09 -0.15 5.84 16 13 H 0.08 2.31 7.58 -51.93 -0.39 1.92 16 14 C -0.55 -13.98 8.46 -34.44 -0.29 -14.27 16 15 H 0.08 1.84 7.74 -52.48 -0.41 1.44 16 16 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -22.97 9.52 55.43 0.53 -22.44 16 18 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 22 C 0.42 10.55 2.81 37.16 0.10 10.65 16 23 F -0.14 -3.79 12.93 2.25 0.03 -3.76 16 24 F -0.22 -5.33 14.21 2.25 0.03 -5.30 16 25 F -0.21 -5.13 16.94 2.25 0.04 -5.09 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.72 6.38 -51.93 -0.33 1.39 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.61 6.84 -51.93 -0.36 0.26 16 32 H 0.08 1.55 3.44 -51.93 -0.18 1.37 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.48 5.80 -51.93 -0.30 1.18 16 35 H 0.40 7.01 8.54 -40.82 -0.35 6.66 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -28.45 296.28 -5.98 -34.43 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.40 Total: 7.15 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.43 Total: 1.55 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.25 Total: -36.94 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.06 Total: -11.49 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 0.10 Total: -14.16 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.45 -5.98 -34.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.465 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds