Wall clock time and date at job start Tue Mar 31 2020 00:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47126 * 2 1 4 4 C 1.52995 * 109.47377 * 120.00098 * 2 1 3 5 5 H 1.08997 * 115.54849 * 28.24532 * 4 2 1 6 6 C 1.53075 * 117.51490 * 242.53106 * 4 2 1 7 7 C 1.53001 * 59.98451 * 252.51663 * 6 4 2 8 8 H 1.08995 * 117.49989 * 252.49905 * 7 6 4 9 9 C 1.50697 * 117.49551 * 107.49684 * 7 6 4 10 10 O 1.21278 * 120.00443 * 269.00872 * 9 7 6 11 11 N 1.34776 * 119.99945 * 89.01556 * 9 7 6 12 12 C 1.46498 * 120.00257 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47052 * 324.99910 * 12 11 9 14 14 C 1.50696 * 109.47610 * 204.99953 * 12 11 9 15 15 H 1.08006 * 119.99429 * 359.97438 * 14 12 11 16 16 C 1.37870 * 120.00428 * 179.72458 * 14 12 11 17 17 N 1.31520 * 120.00049 * 0.27497 * 16 14 12 18 18 Si 1.86803 * 120.00360 * 180.27237 * 16 14 12 19 19 H 1.48496 * 109.46785 * 89.99894 * 18 16 14 20 20 H 1.48497 * 109.47312 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.46877 * 330.00244 * 18 16 14 22 22 C 1.53000 * 109.47005 * 84.99775 * 12 11 9 23 23 F 1.39905 * 109.47324 * 180.02562 * 22 12 11 24 24 F 1.39904 * 109.47229 * 299.99976 * 22 12 11 25 25 F 1.39897 * 109.47400 * 60.00084 * 22 12 11 26 26 H 1.08991 * 109.47459 * 300.03022 * 1 2 3 27 27 H 1.09005 * 109.47121 * 60.02667 * 1 2 3 28 28 H 1.09005 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47368 * 239.99927 * 2 1 3 30 30 H 1.08994 * 109.46878 * 306.37679 * 3 2 1 31 31 H 1.08997 * 109.47080 * 66.37843 * 3 2 1 32 32 H 1.09000 * 109.46813 * 186.37857 * 3 2 1 33 33 H 1.09003 * 117.49894 * 145.03233 * 6 4 2 34 34 H 1.09004 * 117.51073 * 359.97438 * 6 4 2 35 35 H 0.97006 * 120.00022 * 359.97438 * 11 9 7 36 36 H 0.97002 * 120.00015 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.3800 -1.4903 1.6504 6 6 2.8662 0.0929 2.2481 7 6 3.5478 -0.9539 1.3646 8 1 3.8797 -1.8759 1.8417 9 6 4.4169 -0.4549 0.2391 10 8 3.9391 -0.2710 -0.8603 11 7 5.7253 -0.2132 0.4543 12 6 6.5703 0.2712 -0.6400 13 1 6.2437 -0.1784 -1.5777 14 6 8.0041 -0.1084 -0.3734 15 1 8.2603 -0.6555 0.5219 16 6 8.9881 0.2381 -1.2749 17 7 8.6761 0.9048 -2.3648 18 14 10.7643 -0.2391 -0.9482 19 1 11.0359 -1.5724 -1.5428 20 1 11.6680 0.7687 -1.5588 21 1 11.0009 -0.2929 0.5169 22 6 6.4555 1.7938 -0.7372 23 9 7.2621 2.2565 -1.7826 24 9 5.1244 2.1463 -0.9848 25 9 6.8746 2.3710 0.4662 26 1 -0.3634 0.5142 0.8896 27 1 -0.3634 0.5134 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.5865 1.9882 -0.8274 31 1 1.7729 1.9224 0.9415 32 1 3.1240 1.4446 -0.1142 33 1 2.7493 -0.1406 3.3063 34 1 3.0466 1.1424 2.0150 35 1 6.1074 -0.3601 1.3337 36 1 9.3685 1.1489 -2.9989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928808497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:05 Heat of formation + Delta-G solvation = -173.864660 kcal Electronic energy + Delta-G solvation = -23737.686198 eV Core-core repulsion = 19807.527206 eV Total energy + Delta-G solvation = -3930.158992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.41808 -48.05215 -47.73134 -41.25806 -38.37468 -36.32330 -34.54961 -33.85167 -30.38377 -28.04592 -26.64822 -25.37066 -24.32815 -23.01098 -21.23576 -20.18967 -19.18319 -18.84444 -18.65915 -18.14968 -17.51673 -16.83797 -16.43589 -16.11822 -15.64171 -15.18433 -14.95298 -14.77476 -14.61544 -14.45901 -14.29735 -14.12180 -14.01452 -13.78510 -13.61988 -13.18459 -13.01838 -12.79202 -12.62700 -12.51263 -12.23754 -12.10467 -11.81197 -11.64457 -11.55277 -11.17769 -10.88273 -10.68479 -10.30260 -9.96204 -8.22294 -6.53029 1.45494 1.46460 1.58056 1.69001 2.21597 2.39415 2.54981 2.88672 2.93901 3.64928 3.77091 3.83823 3.94200 3.98474 4.13652 4.25417 4.34066 4.41623 4.53690 4.81952 4.83583 4.89215 4.92699 5.02426 5.13070 5.17297 5.26580 5.40010 5.42232 5.53956 5.60601 5.67272 5.72034 6.52301 6.80463 7.17124 7.45694 8.70540 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.005826 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.999674 B = 4804.515942 C = 5153.983728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.153 4.153 4 C -0.108 4.108 5 H 0.139 0.861 6 C -0.147 4.147 7 C -0.197 4.197 8 H 0.153 0.847 9 C 0.527 3.473 10 O -0.561 6.561 11 N -0.706 5.706 12 C 0.253 3.747 13 H 0.045 0.955 14 C -0.562 4.562 15 H 0.091 0.909 16 C 0.014 3.986 17 N -0.876 5.876 18 Si 0.982 3.018 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.258 1.258 22 C 0.414 3.586 23 F -0.153 7.153 24 F -0.215 7.215 25 F -0.204 7.204 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 -3.101 9.952 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C -0.210 4.210 4 C -0.127 4.127 5 H 0.157 0.843 6 C -0.184 4.184 7 C -0.217 4.217 8 H 0.170 0.830 9 C 0.315 3.685 10 O -0.440 6.440 11 N -0.357 5.357 12 C 0.146 3.854 13 H 0.062 0.938 14 C -0.598 4.598 15 H 0.109 0.891 16 C -0.191 4.191 17 N -0.510 5.510 18 Si 0.806 3.194 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.182 1.182 22 C 0.358 3.642 23 F -0.134 7.134 24 F -0.197 7.197 25 F -0.186 7.186 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.248 0.752 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.045 -2.847 8.979 13.770 hybrid contribution 1.286 0.427 -0.208 1.371 sum -8.759 -2.420 8.771 12.630 Atomic orbital electron populations 1.21784 0.93575 1.02193 1.01773 1.20663 0.95986 0.95093 0.97145 1.22116 1.01564 0.96792 1.00501 1.22582 0.90467 1.02005 0.97620 0.84280 1.23334 1.00945 0.96212 0.97948 1.22285 0.95624 1.03844 0.99985 0.82987 1.20536 0.82023 0.76377 0.89566 1.90648 1.73376 1.52861 1.27106 1.45991 1.08895 1.66527 1.14239 1.19249 0.92827 0.83693 0.89652 0.93771 1.21240 0.89403 1.39895 1.09297 0.89103 1.26011 1.04760 0.93754 0.94583 1.70536 1.35156 1.34688 1.10641 0.85170 0.77134 0.77948 0.79156 1.19519 1.21055 1.18199 1.23285 0.71770 0.95747 0.73381 1.93369 1.71836 1.90707 1.57536 1.93047 1.38098 1.94242 1.94349 1.92982 1.90408 1.87440 1.47773 0.91684 0.93408 0.91604 0.91841 0.94395 0.92020 0.93533 0.84681 0.89513 0.75239 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.15 71.98 0.66 -2.25 16 2 C -0.07 -2.00 2.42 -10.79 -0.03 -2.03 16 3 C -0.15 -4.96 7.38 71.98 0.53 -4.43 16 4 C -0.11 -2.51 5.73 -10.77 -0.06 -2.57 16 5 H 0.14 2.35 8.07 -2.39 -0.02 2.33 16 6 C -0.15 -3.20 9.24 30.62 0.28 -2.91 16 7 C -0.20 -5.16 6.18 -11.54 -0.07 -5.23 16 8 H 0.15 3.09 8.14 -2.39 -0.02 3.07 16 9 C 0.53 20.05 5.78 87.66 0.51 20.56 16 10 O -0.56 -25.57 10.73 -3.02 -0.03 -25.60 16 11 N -0.71 -28.39 4.98 -446.11 -2.22 -30.61 16 12 C 0.25 12.71 2.21 44.24 0.10 12.81 16 13 H 0.04 2.57 7.58 -2.39 -0.02 2.55 16 14 C -0.56 -28.48 8.46 25.60 0.22 -28.26 16 15 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 16 C 0.01 0.73 5.20 84.65 0.44 1.17 16 17 N -0.88 -49.03 9.52 21.45 0.20 -48.82 16 18 Si 0.98 40.67 29.54 68.60 2.03 42.69 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 C 0.41 21.53 2.81 71.98 0.20 21.73 16 23 F -0.15 -8.74 12.93 44.97 0.58 -8.16 16 24 F -0.22 -11.01 14.21 44.97 0.64 -10.37 16 25 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 2.27 6.38 -2.39 -0.02 2.25 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.71 6.84 -2.39 -0.02 1.69 16 32 H 0.05 1.84 3.44 -2.39 -0.01 1.83 16 33 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 2.26 5.80 -2.39 -0.01 2.24 16 35 H 0.41 14.07 8.54 -92.70 -0.79 13.28 16 36 H 0.27 14.23 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -63.79 296.28 5.06 -58.73 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.33 Total: 22.86 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 2.78 Total: 8.58 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.02 Total: -79.43 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.03 Total: -25.60 kcal Atomic # 9 Polarization: -29.81 SS G_CDS: 1.98 Total: -27.83 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -63.79 5.06 -58.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.132 kcal (2) G-P(sol) polarization free energy of solvation -63.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds