Wall clock time and date at job start Tue Mar 31 2020 00:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47477 * 2 1 4 4 C 1.53007 * 109.46791 * 119.99979 * 2 1 3 5 5 H 1.09000 * 115.54331 * 274.32764 * 4 2 1 6 6 C 1.52996 * 117.51892 * 128.62744 * 4 2 1 7 7 C 1.52992 * 60.00179 * 252.51786 * 6 4 2 8 8 H 1.09002 * 117.52293 * 107.48028 * 7 6 4 9 9 C 1.50701 * 117.49834 * 252.51282 * 7 6 4 10 10 O 1.21278 * 120.00071 * 68.61944 * 9 7 6 11 11 N 1.34777 * 119.99788 * 248.61719 * 9 7 6 12 12 C 1.46500 * 119.99995 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46596 * 35.00583 * 12 11 9 14 14 C 1.50696 * 109.47188 * 155.00083 * 12 11 9 15 15 H 1.08003 * 120.00087 * 0.02562 * 14 12 11 16 16 C 1.37880 * 120.00316 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99571 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00268 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46754 * 90.00475 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00306 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00735 * 18 16 14 22 22 C 1.52997 * 109.47473 * 275.00486 * 12 11 9 23 23 F 1.39905 * 109.47157 * 59.99740 * 22 12 11 24 24 F 1.39900 * 109.47010 * 300.00131 * 22 12 11 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 12 11 26 26 H 1.09000 * 109.46894 * 300.00352 * 1 2 3 27 27 H 1.09003 * 109.46772 * 60.00203 * 1 2 3 28 28 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47205 * 239.99244 * 2 1 3 30 30 H 1.08999 * 109.47318 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46453 * 299.99828 * 3 2 1 32 32 H 1.08995 * 109.47025 * 59.99281 * 3 2 1 33 33 H 1.08998 * 117.50178 * 145.02068 * 6 4 2 34 34 H 1.09007 * 117.49892 * 0.02562 * 6 4 2 35 35 H 0.96995 * 120.00034 * 0.02562 * 11 9 7 36 36 H 0.97003 * 119.99476 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1266 -0.1059 2.1448 6 6 3.0742 -1.8314 1.0521 7 6 1.6357 -2.1852 1.4344 8 1 1.0063 -2.6345 0.6662 9 6 1.3878 -2.6661 2.8409 10 8 1.5110 -1.9012 3.7739 11 7 1.0291 -3.9463 3.0620 12 6 0.7886 -4.4140 4.4293 13 1 0.3400 -3.6111 5.0143 14 6 -0.1459 -5.5958 4.3990 15 1 -0.5227 -5.9622 3.4555 16 6 -0.5192 -6.2101 5.5756 17 7 -0.0599 -5.7642 6.7245 18 14 -1.6770 -7.6755 5.5379 19 1 -0.8869 -8.9278 5.4249 20 1 -2.4773 -7.7063 6.7884 21 1 -2.5871 -7.5574 4.3705 22 6 2.1158 -4.8295 5.0671 23 9 2.9834 -3.7324 5.0953 24 9 2.6915 -5.8601 4.3163 25 9 1.8862 -5.2756 6.3730 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.8414 -1.9464 1.8177 34 1 3.3919 -2.0478 0.0320 35 1 0.9308 -4.5582 2.3158 36 1 -0.3228 -6.1962 7.5523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928808498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:11 Heat of formation + Delta-G solvation = -169.183418 kcal Electronic energy + Delta-G solvation = -22929.776715 eV Core-core repulsion = 18999.820716 eV Total energy + Delta-G solvation = -3929.955999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.34664 -46.00187 -45.61105 -39.56271 -37.30591 -34.61994 -33.23872 -32.52486 -28.59985 -27.21632 -24.69491 -24.07502 -22.80196 -21.24382 -19.88393 -19.49816 -17.56675 -16.84006 -16.64614 -16.55617 -15.77428 -15.17992 -14.84963 -14.61357 -14.26048 -13.71507 -13.30381 -13.14360 -12.92090 -12.61181 -12.51392 -12.40745 -12.31566 -12.23393 -12.19226 -11.95178 -11.80493 -11.34305 -11.19639 -11.11947 -10.90050 -10.79868 -10.68106 -10.41660 -10.10786 -9.93921 -9.65355 -9.17102 -8.73272 -8.24808 -6.24154 -4.48208 3.03554 3.18511 3.24487 3.26908 3.72439 4.04913 4.20979 4.56017 4.68858 4.82885 4.91814 4.94749 5.10588 5.27013 5.35341 5.46505 5.58774 5.60867 5.77091 5.81939 5.84793 5.86647 5.87966 6.01944 6.09596 6.17347 6.22804 6.27063 6.46538 6.94524 7.19735 7.47328 7.62659 8.35609 8.49764 8.92523 9.19867 10.67483 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.005034 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.785535 B = 5561.349483 C = 6139.121944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.116 4.116 5 H 0.117 0.883 6 C -0.151 4.151 7 C -0.183 4.183 8 H 0.120 0.880 9 C 0.534 3.466 10 O -0.538 6.538 11 N -0.708 5.708 12 C 0.244 3.756 13 H 0.084 0.916 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.840 5.840 18 Si 0.915 3.085 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.270 1.270 22 C 0.417 3.583 23 F -0.218 7.218 24 F -0.209 7.209 25 F -0.137 7.137 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 6.665 -11.965 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.134 4.134 5 H 0.135 0.865 6 C -0.188 4.188 7 C -0.204 4.204 8 H 0.138 0.862 9 C 0.319 3.681 10 O -0.415 6.415 11 N -0.357 5.357 12 C 0.139 3.861 13 H 0.102 0.898 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.361 3.639 23 F -0.200 7.200 24 F -0.191 7.191 25 F -0.118 7.118 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.614 7.175 -11.024 13.410 hybrid contribution -0.323 -1.339 -0.127 1.383 sum 2.291 5.836 -11.150 12.792 Atomic orbital electron populations 1.21827 0.94861 1.02093 1.01627 1.20727 0.95854 0.95974 0.95838 1.21798 1.01062 0.95543 1.01708 1.22437 1.01376 0.89577 1.00049 0.86508 1.23050 0.91016 1.02215 1.02554 1.22286 1.00817 1.00754 0.96584 0.86247 1.19635 0.76657 0.82428 0.89345 1.90680 1.51433 1.54910 1.44506 1.46004 1.68919 1.10512 1.10235 1.19717 0.88295 0.98378 0.79727 0.89803 1.20879 1.29175 1.14347 0.94471 0.90465 1.25093 0.96167 0.98069 0.95108 1.70406 1.39025 1.39834 0.98046 0.86209 0.80167 0.81558 0.77883 1.20206 1.20786 1.19478 1.23143 0.87969 0.73686 0.79132 1.93066 1.74342 1.55914 1.96699 1.92987 1.87008 1.61718 1.77409 1.93403 1.93149 1.88861 1.36396 0.92354 0.92916 0.92479 0.91239 0.92582 0.92801 0.92445 0.88316 0.88185 0.76742 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.03 37.16 0.34 -1.17 16 2 C -0.07 -0.67 3.07 -90.61 -0.28 -0.95 16 3 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 4 C -0.12 -1.51 4.66 -90.62 -0.42 -1.93 16 5 H 0.12 1.77 7.64 -51.93 -0.40 1.37 16 6 C -0.15 -1.91 9.88 -26.74 -0.26 -2.18 16 7 C -0.18 -2.66 5.39 -91.78 -0.49 -3.16 16 8 H 0.12 1.46 7.61 -51.93 -0.39 1.07 16 9 C 0.53 10.62 7.15 -10.98 -0.08 10.54 16 10 O -0.54 -12.77 14.83 5.56 0.08 -12.69 16 11 N -0.71 -14.63 4.98 -54.93 -0.27 -14.90 16 12 C 0.24 6.13 2.21 -69.09 -0.15 5.98 16 13 H 0.08 2.36 7.58 -51.93 -0.39 1.97 16 14 C -0.55 -14.13 8.47 -34.44 -0.29 -14.42 16 15 H 0.08 1.86 7.74 -52.48 -0.41 1.46 16 16 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 17 N -0.84 -23.15 9.50 55.43 0.53 -22.63 16 18 Si 0.92 20.11 29.54 -169.99 -5.02 15.09 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C 0.42 10.82 2.81 37.16 0.10 10.93 16 23 F -0.22 -5.62 15.68 2.25 0.04 -5.59 16 24 F -0.21 -5.22 16.94 2.25 0.04 -5.18 16 25 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.60 7.29 -51.93 -0.38 0.22 16 29 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.10 1.00 8.05 -51.93 -0.42 0.59 16 35 H 0.40 7.11 8.54 -40.82 -0.35 6.76 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -29.80 312.25 -5.99 -35.79 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.82 Total: 4.94 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.29 Total: 4.27 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.25 Total: -37.53 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 0.10 Total: -14.57 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.80 -5.99 -35.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.390 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds