Wall clock time and date at job start Tue Mar 31 2020 00:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47477 * 2 1 4 4 C 1.53007 * 109.46791 * 119.99979 * 2 1 3 5 5 H 1.09000 * 115.54331 * 274.32764 * 4 2 1 6 6 C 1.52996 * 117.51892 * 128.62744 * 4 2 1 7 7 C 1.52992 * 60.00179 * 252.51786 * 6 4 2 8 8 H 1.09002 * 117.52293 * 107.48028 * 7 6 4 9 9 C 1.50701 * 117.49834 * 252.51282 * 7 6 4 10 10 O 1.21278 * 120.00071 * 68.61944 * 9 7 6 11 11 N 1.34777 * 119.99788 * 248.61719 * 9 7 6 12 12 C 1.46500 * 119.99995 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46596 * 35.00583 * 12 11 9 14 14 C 1.50696 * 109.47188 * 155.00083 * 12 11 9 15 15 H 1.08003 * 120.00087 * 0.02562 * 14 12 11 16 16 C 1.37880 * 120.00316 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99571 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00268 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46754 * 90.00475 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00306 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00735 * 18 16 14 22 22 C 1.52997 * 109.47473 * 275.00486 * 12 11 9 23 23 F 1.39905 * 109.47157 * 59.99740 * 22 12 11 24 24 F 1.39900 * 109.47010 * 300.00131 * 22 12 11 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 12 11 26 26 H 1.09000 * 109.46894 * 300.00352 * 1 2 3 27 27 H 1.09003 * 109.46772 * 60.00203 * 1 2 3 28 28 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47205 * 239.99244 * 2 1 3 30 30 H 1.08999 * 109.47318 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46453 * 299.99828 * 3 2 1 32 32 H 1.08995 * 109.47025 * 59.99281 * 3 2 1 33 33 H 1.08998 * 117.50178 * 145.02068 * 6 4 2 34 34 H 1.09007 * 117.49892 * 0.02562 * 6 4 2 35 35 H 0.96995 * 120.00034 * 0.02562 * 11 9 7 36 36 H 0.97003 * 119.99476 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1266 -0.1059 2.1448 6 6 3.0742 -1.8314 1.0521 7 6 1.6357 -2.1852 1.4344 8 1 1.0063 -2.6345 0.6662 9 6 1.3878 -2.6661 2.8409 10 8 1.5110 -1.9012 3.7739 11 7 1.0291 -3.9463 3.0620 12 6 0.7886 -4.4140 4.4293 13 1 0.3400 -3.6111 5.0143 14 6 -0.1459 -5.5958 4.3990 15 1 -0.5227 -5.9622 3.4555 16 6 -0.5192 -6.2101 5.5756 17 7 -0.0599 -5.7642 6.7245 18 14 -1.6770 -7.6755 5.5379 19 1 -0.8869 -8.9278 5.4249 20 1 -2.4773 -7.7063 6.7884 21 1 -2.5871 -7.5574 4.3705 22 6 2.1158 -4.8295 5.0671 23 9 2.9834 -3.7324 5.0953 24 9 2.6915 -5.8601 4.3163 25 9 1.8862 -5.2756 6.3730 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.8414 -1.9464 1.8177 34 1 3.3919 -2.0478 0.0320 35 1 0.9308 -4.5582 2.3158 36 1 -0.3228 -6.1962 7.5523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928808498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:10 Heat of formation + Delta-G solvation = -187.034000 kcal Electronic energy + Delta-G solvation = -22930.550774 eV Core-core repulsion = 18999.820716 eV Total energy + Delta-G solvation = -3930.730058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.45442 -48.09012 -47.76310 -41.01476 -38.55092 -36.45965 -34.49122 -34.13518 -30.49287 -27.97419 -26.67413 -25.56335 -23.77633 -23.05975 -21.36289 -20.61013 -19.34161 -18.88958 -18.68442 -18.36542 -17.51680 -16.88333 -16.32074 -15.96172 -15.53960 -15.11334 -14.99995 -14.91303 -14.56583 -14.49219 -14.32688 -14.07321 -13.95165 -13.93663 -13.55020 -13.42225 -13.05325 -12.97422 -12.77302 -12.66704 -12.23820 -12.13070 -12.01570 -11.59853 -11.52522 -11.17579 -10.98713 -10.75143 -10.71005 -10.07736 -8.23100 -6.54482 1.45866 1.46047 1.54552 1.58406 2.15774 2.37489 2.50637 2.88616 2.93479 3.59614 3.74391 3.79976 3.80934 3.90975 4.11449 4.18053 4.26485 4.43284 4.49426 4.70059 4.83706 4.88111 4.91494 4.99998 5.07033 5.10877 5.25723 5.31658 5.40494 5.48650 5.53151 5.58297 5.63145 6.50563 6.72802 7.15152 7.36459 8.69789 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.005034 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.785535 B = 5561.349483 C = 6139.121944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.112 4.112 5 H 0.087 0.913 6 C -0.135 4.135 7 C -0.190 4.190 8 H 0.152 0.848 9 C 0.527 3.473 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.251 3.749 13 H 0.043 0.957 14 C -0.561 4.561 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.256 1.256 22 C 0.414 3.586 23 F -0.220 7.220 24 F -0.202 7.202 25 F -0.151 7.151 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.414 0.586 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 6.034 -14.860 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.131 4.131 5 H 0.105 0.895 6 C -0.172 4.172 7 C -0.211 4.211 8 H 0.169 0.831 9 C 0.315 3.685 10 O -0.465 6.465 11 N -0.352 5.352 12 C 0.143 3.857 13 H 0.061 0.939 14 C -0.598 4.598 15 H 0.111 0.889 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.808 3.192 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.179 1.179 22 C 0.357 3.643 23 F -0.202 7.202 24 F -0.184 7.184 25 F -0.132 7.132 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.251 0.749 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.260 6.543 -13.967 15.588 hybrid contribution -0.161 -1.077 0.804 1.353 sum 2.099 5.467 -13.163 14.407 Atomic orbital electron populations 1.21846 0.94967 1.01970 1.01749 1.20755 0.95684 0.96375 0.94893 1.21802 1.01352 0.94926 1.02008 1.22488 1.01444 0.88769 1.00432 0.89516 1.23183 0.89287 1.00781 1.03959 1.22277 1.03165 1.02168 0.93495 0.83085 1.20615 0.75061 0.81505 0.91313 1.90656 1.53219 1.55925 1.46713 1.45897 1.69005 1.11390 1.08942 1.19310 0.87685 0.97214 0.81461 0.93881 1.21233 1.29087 1.14240 0.95230 0.88883 1.26042 0.97606 1.00871 0.94660 1.70541 1.40468 1.41269 0.98728 0.85132 0.78087 0.77732 0.78216 1.19893 1.20805 1.17929 1.23310 0.88430 0.73757 0.78754 1.93057 1.74445 1.56041 1.96688 1.92985 1.86917 1.61388 1.77099 1.93374 1.93290 1.89045 1.37497 0.94174 0.90893 0.92729 0.88866 0.92171 0.90970 0.93713 0.90271 0.84248 0.74902 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.03 71.98 0.65 -2.06 16 2 C -0.06 -1.04 3.07 -10.79 -0.03 -1.07 16 3 C -0.14 -2.29 9.18 71.98 0.66 -1.63 16 4 C -0.11 -2.79 4.66 -10.79 -0.05 -2.84 16 5 H 0.09 2.70 7.64 -2.39 -0.02 2.68 16 6 C -0.13 -3.10 9.88 30.59 0.30 -2.80 16 7 C -0.19 -5.21 5.39 -11.54 -0.06 -5.27 16 8 H 0.15 3.18 7.61 -2.39 -0.02 3.16 16 9 C 0.53 21.10 7.15 87.66 0.63 21.73 16 10 O -0.58 -28.88 14.83 -3.02 -0.04 -28.93 16 11 N -0.70 -28.97 4.98 -446.11 -2.22 -31.19 16 12 C 0.25 12.83 2.21 44.24 0.10 12.93 16 13 H 0.04 2.56 7.58 -2.39 -0.02 2.54 16 14 C -0.56 -28.60 8.47 25.60 0.22 -28.38 16 15 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 16 C 0.01 0.69 5.20 84.66 0.44 1.14 16 17 N -0.88 -49.17 9.50 21.45 0.20 -48.97 16 18 Si 0.99 40.63 29.54 68.60 2.03 42.65 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 C 0.41 21.90 2.81 71.98 0.20 22.10 16 23 F -0.22 -11.67 15.68 44.97 0.71 -10.96 16 24 F -0.20 -10.04 16.94 44.97 0.76 -9.28 16 25 F -0.15 -8.68 12.91 44.97 0.58 -8.10 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.02 7.29 -2.39 -0.02 1.00 16 29 H 0.09 1.27 7.90 -2.39 -0.02 1.25 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.14 2.15 8.05 -2.38 -0.02 2.13 16 35 H 0.41 14.22 8.54 -92.71 -0.79 13.43 16 36 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -66.12 312.25 5.37 -60.75 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.31 Total: 20.17 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 3.05 Total: 13.84 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.02 Total: -80.16 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.04 Total: -28.93 kcal Atomic # 9 Polarization: -30.39 SS G_CDS: 2.05 Total: -28.34 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -66.12 5.37 -60.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.280 kcal (2) G-P(sol) polarization free energy of solvation -66.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds