Wall clock time and date at job start Tue Mar 31 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47205 * 2 1 4 4 C 1.52998 * 109.46917 * 240.00197 * 2 1 3 5 5 C 1.50705 * 109.47143 * 64.99875 * 4 2 1 6 6 O 1.21279 * 119.99792 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00108 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99461 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47709 * 35.00112 * 8 7 5 10 10 C 1.50702 * 109.46713 * 155.00372 * 8 7 5 11 11 H 1.07999 * 120.00631 * 114.76122 * 10 8 7 12 12 C 1.37884 * 119.99889 * 294.75605 * 10 8 7 13 13 N 1.31505 * 120.00065 * 184.89538 * 12 10 8 14 14 Si 1.86803 * 119.99684 * 4.89837 * 12 10 8 15 15 H 1.48498 * 109.46965 * 84.90603 * 14 12 10 16 16 H 1.48505 * 109.47006 * 204.90360 * 14 12 10 17 17 H 1.48500 * 109.47189 * 324.90436 * 14 12 10 18 18 C 1.53003 * 109.47070 * 274.99277 * 8 7 5 19 19 F 1.39906 * 109.46512 * 65.02370 * 18 8 7 20 20 F 1.39894 * 109.47181 * 185.01884 * 18 8 7 21 21 F 1.39900 * 109.47255 * 305.02546 * 18 8 7 22 22 C 1.53001 * 109.47483 * 120.00367 * 2 1 3 23 23 C 1.52999 * 117.49773 * 248.62000 * 22 2 1 24 24 C 1.53000 * 117.49858 * 179.97438 * 22 2 1 25 25 H 1.09005 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46945 * 299.99282 * 1 2 3 27 27 H 1.08995 * 109.47351 * 59.99908 * 1 2 3 28 28 H 1.09003 * 109.47574 * 184.99697 * 4 2 1 29 29 H 1.09003 * 109.47434 * 304.99894 * 4 2 1 30 30 H 0.96994 * 119.99696 * 359.97438 * 7 5 4 31 31 H 0.97001 * 120.00271 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.54693 * 34.33134 * 22 2 1 33 33 H 1.08992 * 117.50173 * 0.02562 * 23 22 2 34 34 H 1.09003 * 117.49701 * 145.01652 * 23 22 2 35 35 H 1.09001 * 117.49660 * 214.97467 * 24 22 2 36 36 H 1.08994 * 117.50295 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9851 -0.3913 -3.7002 8 6 1.5979 0.3658 -4.8932 9 1 1.6291 1.4327 -4.6725 10 6 2.5542 0.0569 -6.0163 11 1 2.2020 -0.4535 -6.9005 12 6 3.8788 0.4261 -5.9151 13 7 4.6918 0.2439 -6.9325 14 14 4.5184 1.1852 -4.3326 15 1 4.8919 0.1072 -3.3822 16 1 5.7115 2.0181 -4.6301 17 1 3.4606 2.0340 -3.7278 18 6 0.1791 -0.0280 -5.3088 19 9 -0.7236 0.3628 -4.3139 20 9 -0.1481 0.6081 -6.5111 21 9 0.1115 -1.4147 -5.4813 22 6 2.0401 -0.7213 1.2492 23 6 2.7420 0.1225 2.3150 24 6 3.5551 -0.8286 1.4338 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.1263 -0.7994 -1.2057 29 1 1.6053 -1.7198 -1.2952 30 1 2.4896 -1.2147 -3.7908 31 1 5.6237 0.5033 -6.8612 32 1 1.4311 -1.5586 1.5901 33 1 2.8401 1.1916 2.1266 34 1 2.5948 -0.1594 3.3576 35 1 3.9426 -1.7361 1.8969 36 1 4.1884 -0.3850 0.6657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928814369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:08 Heat of formation + Delta-G solvation = -186.596881 kcal Electronic energy + Delta-G solvation = -23162.516838 eV Core-core repulsion = 19231.805735 eV Total energy + Delta-G solvation = -3930.711103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.09972 -46.61228 -46.58613 -39.52559 -37.74638 -34.96767 -32.95553 -32.50825 -29.63057 -27.16850 -25.02360 -23.48157 -22.42333 -21.41448 -20.15812 -19.46533 -18.16028 -17.57426 -16.89801 -16.61272 -16.33459 -15.80549 -15.13537 -14.67731 -14.53159 -13.92746 -13.55748 -13.49839 -13.31522 -13.05528 -12.91520 -12.80768 -12.78866 -12.68433 -12.57367 -12.07436 -11.65081 -11.62331 -11.25155 -11.16195 -11.09926 -10.71575 -10.63845 -10.24889 -10.21488 -9.98658 -9.83911 -9.32408 -8.94142 -8.43945 -6.51549 -4.65124 3.03154 3.07475 3.24037 3.27906 3.58878 3.79028 3.92099 4.09681 4.60392 4.83277 4.85862 4.93596 4.96735 5.09961 5.17789 5.26413 5.28273 5.42211 5.53641 5.61538 5.68502 5.78835 5.82750 5.93278 6.04512 6.12291 6.19520 6.42719 6.46970 6.62683 6.90066 7.10936 7.85063 8.26097 8.50978 8.81661 9.02337 10.56973 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.007111 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.211452 B = 3936.707568 C = 5110.634018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.498 3.502 6 O -0.537 6.537 7 N -0.719 5.719 8 C 0.204 3.796 9 H 0.091 0.909 10 C -0.539 4.539 11 H 0.094 0.906 12 C 0.095 3.905 13 N -0.864 5.864 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.288 1.288 17 H -0.257 1.257 18 C 0.442 3.558 19 F -0.194 7.194 20 F -0.184 7.184 21 F -0.191 7.191 22 C -0.146 4.146 23 C -0.180 4.180 24 C -0.184 4.184 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.401 0.599 31 H 0.274 0.726 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -3.090 13.312 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.063 4.063 3 H 0.095 0.905 4 C -0.180 4.180 5 C 0.285 3.715 6 O -0.414 6.414 7 N -0.373 5.373 8 C 0.101 3.899 9 H 0.109 0.891 10 C -0.577 4.577 11 H 0.112 0.888 12 C -0.114 4.114 13 N -0.497 5.497 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.215 1.215 17 H -0.181 1.181 18 C 0.387 3.613 19 F -0.175 7.175 20 F -0.166 7.166 21 F -0.172 7.172 22 C -0.164 4.164 23 C -0.217 4.217 24 C -0.221 4.221 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.391 -2.336 13.284 13.908 hybrid contribution 0.563 -0.241 0.612 0.866 sum -2.828 -2.577 13.896 14.414 Atomic orbital electron populations 1.21908 0.94242 1.01342 1.03075 1.20450 0.96600 0.98805 0.90445 0.90456 1.21803 1.02769 1.00445 0.92993 1.20903 0.79302 0.86059 0.85271 1.90629 1.39603 1.24385 1.86816 1.47540 1.56156 1.28149 1.05426 1.20263 0.87133 0.96177 0.86362 0.89125 1.20794 0.93292 1.41983 1.01590 0.88781 1.24917 0.96377 0.93490 0.96604 1.69865 1.05807 1.43924 1.30104 0.86816 0.79105 0.80236 0.83288 1.19651 1.21489 1.18118 1.21482 0.91092 0.74309 0.74426 1.93144 1.71594 1.90832 1.61955 1.93108 1.93873 1.82090 1.47482 1.93079 1.97111 1.31632 1.95403 1.22419 0.94544 1.01765 0.97667 1.22998 1.04918 0.97732 0.96056 1.22972 0.94214 1.01662 1.03259 0.93470 0.93183 0.90108 0.89285 0.88970 0.76268 0.91564 0.87853 0.88836 0.89103 0.88934 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.92 37.16 0.33 -1.70 16 2 C -0.04 -0.60 2.19 -90.62 -0.20 -0.80 16 3 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 4 C -0.14 -2.01 5.09 -27.88 -0.14 -2.16 16 5 C 0.50 9.40 6.75 -10.98 -0.07 9.32 16 6 O -0.54 -11.57 12.54 5.56 0.07 -11.50 16 7 N -0.72 -14.34 2.89 -54.93 -0.16 -14.50 16 8 C 0.20 4.65 1.42 -69.08 -0.10 4.55 16 9 H 0.09 2.21 6.52 -51.93 -0.34 1.87 16 10 C -0.54 -13.75 8.65 -34.44 -0.30 -14.05 16 11 H 0.09 2.63 7.95 -52.49 -0.42 2.21 16 12 C 0.10 2.47 5.47 -17.82 -0.10 2.37 16 13 N -0.86 -23.79 13.96 55.43 0.77 -23.01 16 14 Si 0.88 19.98 25.78 -169.99 -4.38 15.60 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.26 -6.05 6.57 56.52 0.37 -5.68 16 18 C 0.44 9.71 2.79 37.16 0.10 9.82 16 19 F -0.19 -4.19 15.83 2.25 0.04 -4.15 16 20 F -0.18 -4.13 16.86 2.25 0.04 -4.09 16 21 F -0.19 -4.06 16.97 2.25 0.04 -4.02 16 22 C -0.15 -1.60 5.15 -90.62 -0.47 -2.07 16 23 C -0.18 -1.82 10.18 -26.71 -0.27 -2.09 16 24 C -0.18 -1.90 9.67 -26.71 -0.26 -2.16 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 28 H 0.09 1.20 7.12 -51.93 -0.37 0.83 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.40 7.32 8.58 -40.82 -0.35 6.97 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -28.06 308.49 -5.10 -33.17 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.70 Total: 6.81 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.47 Total: 1.05 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.61 Total: -37.51 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 0.11 Total: -12.27 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.38 Total: 15.60 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.06 -5.10 -33.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.430 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds