Wall clock time and date at job start Tue Mar 31 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47205 * 2 1 4 4 C 1.52998 * 109.46917 * 240.00197 * 2 1 3 5 5 C 1.50705 * 109.47143 * 64.99875 * 4 2 1 6 6 O 1.21279 * 119.99792 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00108 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99461 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47709 * 35.00112 * 8 7 5 10 10 C 1.50702 * 109.46713 * 155.00372 * 8 7 5 11 11 H 1.07999 * 120.00631 * 114.76122 * 10 8 7 12 12 C 1.37884 * 119.99889 * 294.75605 * 10 8 7 13 13 N 1.31505 * 120.00065 * 184.89538 * 12 10 8 14 14 Si 1.86803 * 119.99684 * 4.89837 * 12 10 8 15 15 H 1.48498 * 109.46965 * 84.90603 * 14 12 10 16 16 H 1.48505 * 109.47006 * 204.90360 * 14 12 10 17 17 H 1.48500 * 109.47189 * 324.90436 * 14 12 10 18 18 C 1.53003 * 109.47070 * 274.99277 * 8 7 5 19 19 F 1.39906 * 109.46512 * 65.02370 * 18 8 7 20 20 F 1.39894 * 109.47181 * 185.01884 * 18 8 7 21 21 F 1.39900 * 109.47255 * 305.02546 * 18 8 7 22 22 C 1.53001 * 109.47483 * 120.00367 * 2 1 3 23 23 C 1.52999 * 117.49773 * 248.62000 * 22 2 1 24 24 C 1.53000 * 117.49858 * 179.97438 * 22 2 1 25 25 H 1.09005 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46945 * 299.99282 * 1 2 3 27 27 H 1.08995 * 109.47351 * 59.99908 * 1 2 3 28 28 H 1.09003 * 109.47574 * 184.99697 * 4 2 1 29 29 H 1.09003 * 109.47434 * 304.99894 * 4 2 1 30 30 H 0.96994 * 119.99696 * 359.97438 * 7 5 4 31 31 H 0.97001 * 120.00271 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.54693 * 34.33134 * 22 2 1 33 33 H 1.08992 * 117.50173 * 0.02562 * 23 22 2 34 34 H 1.09003 * 117.49701 * 145.01652 * 23 22 2 35 35 H 1.09001 * 117.49660 * 214.97467 * 24 22 2 36 36 H 1.08994 * 117.50295 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9851 -0.3913 -3.7002 8 6 1.5979 0.3658 -4.8932 9 1 1.6291 1.4327 -4.6725 10 6 2.5542 0.0569 -6.0163 11 1 2.2020 -0.4535 -6.9005 12 6 3.8788 0.4261 -5.9151 13 7 4.6918 0.2439 -6.9325 14 14 4.5184 1.1852 -4.3326 15 1 4.8919 0.1072 -3.3822 16 1 5.7115 2.0181 -4.6301 17 1 3.4606 2.0340 -3.7278 18 6 0.1791 -0.0280 -5.3088 19 9 -0.7236 0.3628 -4.3139 20 9 -0.1481 0.6081 -6.5111 21 9 0.1115 -1.4147 -5.4813 22 6 2.0401 -0.7213 1.2492 23 6 2.7420 0.1225 2.3150 24 6 3.5551 -0.8286 1.4338 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.1263 -0.7994 -1.2057 29 1 1.6053 -1.7198 -1.2952 30 1 2.4896 -1.2147 -3.7908 31 1 5.6237 0.5033 -6.8612 32 1 1.4311 -1.5586 1.5901 33 1 2.8401 1.1916 2.1266 34 1 2.5948 -0.1594 3.3576 35 1 3.9426 -1.7361 1.8969 36 1 4.1884 -0.3850 0.6657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928814369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:08 Heat of formation + Delta-G solvation = -202.569569 kcal Electronic energy + Delta-G solvation = -23163.209466 eV Core-core repulsion = 19231.805735 eV Total energy + Delta-G solvation = -3931.403731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.90079 -48.41019 -48.38383 -40.97302 -38.76229 -36.69563 -34.43643 -34.04534 -31.30951 -28.46673 -26.95637 -24.56445 -23.28054 -23.02541 -21.56779 -20.63208 -19.96139 -19.36462 -18.67069 -18.39341 -17.93076 -17.12343 -16.41490 -16.06758 -15.88859 -15.41355 -15.28321 -15.19033 -14.85564 -14.77455 -14.63393 -14.57976 -14.52499 -14.13379 -13.83749 -13.67682 -13.01872 -12.91603 -12.52456 -12.40771 -12.23536 -12.13368 -12.06912 -11.86077 -11.75379 -11.14088 -11.04578 -10.85659 -10.62115 -10.12317 -8.52895 -6.71042 1.24136 1.32154 1.42756 1.61620 2.00782 2.17887 2.20052 2.90074 2.99383 3.17342 3.35075 3.47799 3.72824 3.85033 4.01831 4.10849 4.21430 4.34841 4.48446 4.62263 4.63441 4.74516 4.83777 4.89895 4.96987 5.04787 5.17092 5.22023 5.30802 5.39062 5.44485 5.57833 5.87445 6.42037 6.67678 6.99551 7.29877 8.59568 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.007111 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.211452 B = 3936.707568 C = 5110.634018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 H 0.055 0.945 4 C -0.133 4.133 5 C 0.494 3.506 6 O -0.565 6.565 7 N -0.719 5.719 8 C 0.214 3.786 9 H 0.075 0.925 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.905 5.905 14 Si 0.933 3.067 15 H -0.239 1.239 16 H -0.291 1.291 17 H -0.271 1.271 18 C 0.445 3.555 19 F -0.190 7.190 20 F -0.189 7.189 21 F -0.185 7.185 22 C -0.147 4.147 23 C -0.179 4.179 24 C -0.182 4.182 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.412 0.588 31 H 0.279 0.721 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -4.188 15.954 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 H 0.074 0.926 4 C -0.172 4.172 5 C 0.283 3.717 6 O -0.444 6.444 7 N -0.373 5.373 8 C 0.108 3.892 9 H 0.092 0.908 10 C -0.580 4.580 11 H 0.080 0.920 12 C -0.148 4.148 13 N -0.540 5.540 14 Si 0.758 3.242 15 H -0.163 1.163 16 H -0.217 1.217 17 H -0.196 1.196 18 C 0.390 3.610 19 F -0.171 7.171 20 F -0.170 7.170 21 F -0.167 7.167 22 C -0.165 4.165 23 C -0.216 4.216 24 C -0.219 4.219 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.250 0.750 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.012 -3.466 15.943 16.591 hybrid contribution 0.354 0.127 -0.236 0.444 sum -2.658 -3.339 15.708 16.277 Atomic orbital electron populations 1.21843 0.94508 1.01967 1.01894 1.20402 0.96379 0.97953 0.91406 0.92625 1.21871 1.03900 1.00889 0.90575 1.21699 0.78357 0.85882 0.85798 1.90630 1.40725 1.25853 1.87160 1.47196 1.56697 1.28376 1.05053 1.19836 0.86990 0.95678 0.86666 0.90774 1.20721 0.93933 1.41731 1.01600 0.92035 1.25528 0.96422 0.93716 0.99129 1.69952 1.06411 1.45662 1.32010 0.85966 0.77824 0.80008 0.80419 1.16265 1.21735 1.19635 1.21341 0.90848 0.74523 0.74309 1.93153 1.71385 1.90838 1.61750 1.93098 1.93883 1.82233 1.47819 1.93086 1.97075 1.31118 1.95373 1.22318 0.95246 1.02273 0.96709 1.23072 1.04357 0.97326 0.96845 1.23042 0.93476 1.02314 1.03078 0.91896 0.92149 0.93473 0.87703 0.86303 0.75020 0.91162 0.86273 0.89668 0.87368 0.87208 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.92 71.98 0.64 -3.04 16 2 C -0.04 -1.04 2.19 -10.80 -0.02 -1.07 16 3 H 0.06 1.61 7.71 -2.39 -0.02 1.59 16 4 C -0.13 -3.42 5.09 29.85 0.15 -3.26 16 5 C 0.49 17.80 6.75 87.66 0.59 18.39 16 6 O -0.56 -24.00 12.54 -3.03 -0.04 -24.04 16 7 N -0.72 -27.64 2.89 -446.08 -1.29 -28.93 16 8 C 0.21 9.71 1.42 44.25 0.06 9.78 16 9 H 0.07 3.65 6.52 -2.39 -0.02 3.63 16 10 C -0.54 -28.01 8.65 25.60 0.22 -27.79 16 11 H 0.06 3.54 7.95 -2.91 -0.02 3.52 16 12 C 0.06 2.98 5.47 84.66 0.46 3.45 16 13 N -0.91 -50.39 13.96 21.45 0.30 -50.09 16 14 Si 0.93 40.67 25.78 68.60 1.77 42.44 16 15 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 16 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.42 6.57 99.48 0.65 -11.77 16 18 C 0.45 19.50 2.79 71.98 0.20 19.70 16 19 F -0.19 -8.12 15.83 44.97 0.71 -7.41 16 20 F -0.19 -8.55 16.86 44.97 0.76 -7.79 16 21 F -0.18 -7.76 16.97 44.97 0.76 -7.00 16 22 C -0.15 -2.72 5.15 -10.79 -0.06 -2.78 16 23 C -0.18 -3.07 10.18 30.61 0.31 -2.75 16 24 C -0.18 -3.11 9.67 30.61 0.30 -2.82 16 25 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.52 5.95 -2.39 -0.01 1.51 16 28 H 0.10 2.42 7.12 -2.39 -0.02 2.41 16 29 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.41 14.18 8.58 -92.71 -0.80 13.39 16 31 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.12 1.87 8.11 -2.39 -0.02 1.85 16 33 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 34 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.63 7.58 -2.39 -0.02 1.61 16 Total: -1.00 -60.50 308.49 6.10 -54.40 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.26 Total: 20.61 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 2.86 Total: 7.81 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -0.99 Total: -79.03 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.04 Total: -24.04 kcal Atomic # 9 Polarization: -24.43 SS G_CDS: 2.23 Total: -22.20 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.77 Total: 42.44 kcal Total: -60.50 6.10 -54.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.167 kcal (2) G-P(sol) polarization free energy of solvation -60.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds