Wall clock time and date at job start Tue Mar 31 2020 01:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.52997 * 109.47174 * 119.99970 * 2 1 3 5 5 C 1.50699 * 109.47219 * 294.99708 * 4 2 1 6 6 O 1.21281 * 119.99977 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00132 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00053 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.47343 * 34.99641 * 8 7 5 10 10 C 1.50701 * 109.47434 * 154.99925 * 8 7 5 11 11 H 1.08003 * 120.00150 * 116.79961 * 10 8 7 12 12 C 1.37876 * 119.99815 * 296.80086 * 10 8 7 13 13 N 1.31520 * 119.99630 * 174.08846 * 12 10 8 14 14 Si 1.86799 * 120.00303 * 354.09247 * 12 10 8 15 15 H 1.48494 * 109.47134 * 85.15681 * 14 12 10 16 16 H 1.48492 * 109.47166 * 205.16043 * 14 12 10 17 17 H 1.48505 * 109.46789 * 325.15864 * 14 12 10 18 18 C 1.53007 * 109.47135 * 275.00025 * 8 7 5 19 19 F 1.39906 * 109.46706 * 305.24930 * 18 8 7 20 20 F 1.39898 * 109.47236 * 185.24839 * 18 8 7 21 21 F 1.39900 * 109.47110 * 65.24276 * 18 8 7 22 22 C 1.52997 * 109.47045 * 239.99932 * 2 1 3 23 23 C 1.53007 * 117.49983 * 128.61947 * 22 2 1 24 24 C 1.52995 * 59.99950 * 252.51037 * 23 22 2 25 25 H 1.09003 * 109.46773 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46880 * 300.00005 * 1 2 3 27 27 H 1.08997 * 109.47081 * 60.00019 * 1 2 3 28 28 H 1.09000 * 109.47104 * 174.99983 * 4 2 1 29 29 H 1.09002 * 109.47342 * 55.00349 * 4 2 1 30 30 H 0.97004 * 119.99846 * 359.97438 * 7 5 4 31 31 H 0.97001 * 119.99251 * 179.97438 * 13 12 10 32 32 H 1.09001 * 115.55412 * 274.32868 * 22 2 1 33 33 H 1.08997 * 117.49769 * 0.02562 * 23 22 2 34 34 H 1.08999 * 117.50122 * 145.01590 * 23 22 2 35 35 H 1.09005 * 117.49830 * 252.50560 * 24 23 22 36 36 H 1.09000 * 117.52054 * 107.48351 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9845 -0.3918 3.7001 8 6 1.5966 0.3645 4.8933 9 1 0.6205 0.8221 4.7320 10 6 1.5259 -0.5657 6.0768 11 1 2.1933 -0.4258 6.9143 12 6 0.6091 -1.5955 6.0904 13 7 0.6241 -2.4763 7.0671 14 14 -0.6540 -1.7398 4.7218 15 1 -0.0613 -2.4769 3.5770 16 1 -1.8434 -2.4750 5.2215 17 1 -1.0612 -0.3821 4.2790 18 6 2.6333 1.4567 5.1642 19 9 3.9052 0.8807 5.2525 20 9 2.3284 2.1007 6.3681 21 9 2.6143 2.3871 4.1197 22 6 2.0400 -0.7213 -1.2492 23 6 3.0741 0.0052 -2.1117 24 6 1.6357 -0.1495 -2.6096 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7994 1.2055 29 1 1.6054 -1.7198 1.2951 30 1 2.4878 -1.2162 3.7908 31 1 -0.0211 -3.2005 7.0768 32 1 2.1267 -1.8045 -1.1642 33 1 3.3914 0.9967 -1.7890 34 1 3.8416 -0.6001 -2.5942 35 1 1.4568 -0.8566 -3.4197 36 1 1.0060 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928814371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:11 Heat of formation + Delta-G solvation = -203.047294 kcal Electronic energy + Delta-G solvation = -23069.583458 eV Core-core repulsion = 19138.159012 eV Total energy + Delta-G solvation = -3931.424446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.90494 -48.41713 -48.38606 -40.94354 -38.76776 -36.68881 -34.41647 -34.06562 -31.27306 -28.42430 -26.95250 -24.79944 -23.10572 -23.05491 -21.44666 -20.64588 -20.01161 -19.36137 -18.70001 -18.39141 -17.87115 -17.04065 -16.51595 -16.04685 -15.96625 -15.35084 -15.29487 -15.10069 -14.86122 -14.75644 -14.59609 -14.54240 -14.49215 -14.21463 -13.97311 -13.65421 -13.13907 -12.90741 -12.53701 -12.40312 -12.23234 -12.10022 -12.01793 -11.88561 -11.69730 -11.18578 -11.02926 -10.76765 -10.66962 -10.11337 -8.52782 -6.69930 1.24470 1.32264 1.43227 1.61501 2.00689 2.19203 2.19891 2.93485 2.98438 3.16442 3.35735 3.46647 3.75417 3.78503 4.05293 4.11161 4.25174 4.37788 4.49848 4.59879 4.67878 4.72588 4.84146 4.91797 4.95630 5.02864 5.09005 5.25680 5.32710 5.37487 5.47264 5.54824 5.88383 6.42359 6.69046 7.00174 7.30594 8.59887 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.018020 B = 0.006590 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.472713 B = 4247.625341 C = 5218.951707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 H 0.061 0.939 4 C -0.132 4.132 5 C 0.494 3.506 6 O -0.566 6.566 7 N -0.718 5.718 8 C 0.212 3.788 9 H 0.075 0.925 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.904 5.904 14 Si 0.928 3.072 15 H -0.241 1.241 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.445 3.555 19 F -0.185 7.185 20 F -0.188 7.188 21 F -0.190 7.190 22 C -0.152 4.152 23 C -0.179 4.179 24 C -0.176 4.176 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.412 0.588 31 H 0.279 0.721 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 0.295 -16.217 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.059 4.059 3 H 0.079 0.921 4 C -0.171 4.171 5 C 0.283 3.717 6 O -0.445 6.445 7 N -0.372 5.372 8 C 0.106 3.894 9 H 0.092 0.908 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.539 5.539 14 Si 0.752 3.248 15 H -0.165 1.165 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.389 3.611 19 F -0.167 7.167 20 F -0.170 7.170 21 F -0.172 7.172 22 C -0.170 4.170 23 C -0.216 4.216 24 C -0.213 4.213 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.127 0.873 30 H 0.250 0.750 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.566 0.873 -16.206 16.431 hybrid contribution -0.224 -0.132 0.290 0.390 sum 2.342 0.741 -15.916 16.104 Atomic orbital electron populations 1.21892 0.95321 1.01645 1.01804 1.20380 0.95709 0.98342 0.91495 0.92094 1.21839 1.04579 1.00231 0.90456 1.21694 0.78525 0.85732 0.85774 1.90633 1.40819 1.25972 1.87124 1.47151 1.57276 1.27762 1.04967 1.19805 0.92456 0.89822 0.87271 0.90750 1.20724 1.21971 1.13587 1.01770 0.92019 1.25457 0.97640 0.93751 0.97547 1.69957 1.36355 1.14115 1.33451 0.86005 0.79214 0.79049 0.80500 1.16456 1.21128 1.19828 1.21364 0.82988 0.83398 0.73316 1.93088 1.43069 1.84516 1.95997 1.93097 1.93141 1.83345 1.47419 1.93151 1.96678 1.68867 1.58500 1.22286 1.04390 0.99577 0.90730 1.23082 0.92800 1.01938 1.03782 1.22980 0.97980 1.03360 0.96971 0.92497 0.93734 0.91946 0.86415 0.87286 0.75005 0.91123 0.86474 0.89484 0.87504 0.87530 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 8.77 71.98 0.63 -3.35 16 2 C -0.04 -0.99 2.19 -10.80 -0.02 -1.02 16 3 H 0.06 1.72 7.71 -2.39 -0.02 1.70 16 4 C -0.13 -3.36 5.16 29.85 0.15 -3.20 16 5 C 0.49 17.79 6.94 87.66 0.61 18.40 16 6 O -0.57 -24.02 12.54 -3.03 -0.04 -24.06 16 7 N -0.72 -27.68 3.20 -446.09 -1.43 -29.11 16 8 C 0.21 9.64 1.41 44.25 0.06 9.70 16 9 H 0.07 3.65 6.29 -2.38 -0.01 3.63 16 10 C -0.54 -28.01 8.64 25.60 0.22 -27.79 16 11 H 0.06 3.54 7.91 -2.91 -0.02 3.52 16 12 C 0.06 3.18 5.46 84.65 0.46 3.65 16 13 N -0.90 -49.83 13.96 21.45 0.30 -49.53 16 14 Si 0.93 40.65 26.13 68.60 1.79 42.44 16 15 H -0.24 -9.36 7.11 99.48 0.71 -8.65 16 16 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.27 -12.59 6.55 99.48 0.65 -11.94 16 18 C 0.44 19.54 2.79 71.98 0.20 19.74 16 19 F -0.19 -7.83 16.97 44.97 0.76 -7.07 16 20 F -0.19 -8.50 16.83 44.97 0.76 -7.75 16 21 F -0.19 -8.20 15.84 44.97 0.71 -7.49 16 22 C -0.15 -2.80 5.15 -10.79 -0.06 -2.86 16 23 C -0.18 -2.98 10.18 30.59 0.31 -2.67 16 24 C -0.18 -2.91 9.73 30.59 0.30 -2.61 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.49 5.95 -2.39 -0.01 1.48 16 27 H 0.06 1.47 7.29 -2.39 -0.02 1.45 16 28 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.41 14.34 8.59 -92.71 -0.80 13.54 16 31 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.12 1.88 8.11 -2.39 -0.02 1.86 16 33 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.09 1.56 7.61 -2.39 -0.02 1.54 16 Total: -1.00 -60.02 309.19 5.99 -54.03 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.26 Total: 20.54 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 2.87 Total: 7.99 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.13 Total: -78.64 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.04 Total: -24.06 kcal Atomic # 9 Polarization: -24.54 SS G_CDS: 2.23 Total: -22.31 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.79 Total: 42.44 kcal Total: -60.02 5.99 -54.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.013 kcal (2) G-P(sol) polarization free energy of solvation -60.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds