Wall clock time and date at job start Tue Mar 31 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47401 * 2 1 4 4 C 1.53007 * 109.46955 * 239.99499 * 2 1 3 5 5 C 1.50705 * 109.46741 * 65.00307 * 4 2 1 6 6 O 1.21277 * 120.00089 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99557 * 180.02562 * 5 4 2 8 8 C 1.46495 * 119.99664 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.47232 * 324.99313 * 8 7 5 10 10 C 1.50707 * 109.46930 * 204.99876 * 8 7 5 11 11 H 1.07994 * 119.99813 * 354.16580 * 10 8 7 12 12 C 1.37875 * 119.99980 * 174.17196 * 10 8 7 13 13 N 1.31513 * 120.00140 * 332.17027 * 12 10 8 14 14 Si 1.86802 * 120.00281 * 152.44859 * 12 10 8 15 15 H 1.48492 * 109.47369 * 179.72603 * 14 12 10 16 16 H 1.48506 * 109.46678 * 299.72544 * 14 12 10 17 17 H 1.48495 * 109.46822 * 59.71918 * 14 12 10 18 18 C 1.53002 * 109.47646 * 84.99443 * 8 7 5 19 19 F 1.39904 * 109.47165 * 176.81193 * 18 8 7 20 20 F 1.39899 * 109.46745 * 296.81131 * 18 8 7 21 21 F 1.39898 * 109.46934 * 56.81232 * 18 8 7 22 22 C 1.52999 * 109.46864 * 120.00163 * 2 1 3 23 23 C 1.53003 * 117.49993 * 248.61715 * 22 2 1 24 24 C 1.53004 * 117.49802 * 179.97438 * 22 2 1 25 25 H 1.09004 * 109.47196 * 59.99765 * 1 2 3 26 26 H 1.08998 * 109.47884 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47096 * 300.00293 * 1 2 3 28 28 H 1.08995 * 109.46951 * 305.00827 * 4 2 1 29 29 H 1.08991 * 109.46898 * 185.00383 * 4 2 1 30 30 H 0.96997 * 119.99856 * 359.97438 * 7 5 4 31 31 H 0.96997 * 120.00172 * 354.74589 * 13 12 10 32 32 H 1.09005 * 115.55357 * 34.32325 * 22 2 1 33 33 H 1.09008 * 117.49547 * 359.97438 * 23 22 2 34 34 H 1.08994 * 117.49880 * 145.01703 * 23 22 2 35 35 H 1.09004 * 117.49442 * 214.97643 * 24 22 2 36 36 H 1.08995 * 117.50095 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6412 0.0569 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9843 -0.3921 -3.7002 8 6 1.5973 0.3647 -4.8932 9 1 0.6215 0.8229 -4.7321 10 6 1.5262 -0.5654 -6.0770 11 1 1.8375 -1.5944 -5.9746 12 6 1.0638 -0.1025 -7.2906 13 7 0.2077 0.8951 -7.3310 14 14 1.6472 -0.8972 -8.8772 15 1 1.0021 -0.2255 -10.0337 16 1 3.1221 -0.7615 -8.9855 17 1 1.2816 -2.3364 -8.8734 18 6 2.6348 1.4562 -5.1638 19 9 2.3042 2.1317 -6.3435 20 9 2.6490 2.3608 -4.0967 21 9 3.8997 0.8740 -5.2986 22 6 2.0399 -0.7213 1.2492 23 6 2.7419 0.1225 2.3152 24 6 3.5549 -0.8287 1.4340 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6052 -1.7198 -1.2951 29 1 3.1262 -0.7997 -1.2055 30 1 2.4882 -1.2161 -3.7907 31 1 -0.1569 1.2550 -6.5073 32 1 1.4309 -1.5585 1.5903 33 1 2.8408 1.1915 2.1262 34 1 2.5946 -0.1594 3.3577 35 1 3.9423 -1.7362 1.8972 36 1 4.1883 -0.3851 0.6659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928814380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:18 Heat of formation + Delta-G solvation = -205.300277 kcal Electronic energy + Delta-G solvation = -23004.023817 eV Core-core repulsion = 19072.501674 eV Total energy + Delta-G solvation = -3931.522143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.80276 -48.33933 -48.28171 -40.94701 -38.74944 -36.74746 -34.58178 -34.04608 -30.69080 -28.34742 -26.50463 -24.64742 -23.52098 -23.11827 -21.62216 -20.64168 -19.74996 -19.27526 -19.04378 -18.41776 -17.83868 -16.59190 -16.42531 -15.96994 -15.68857 -15.41839 -15.27460 -15.17924 -14.80066 -14.65507 -14.52096 -14.49671 -14.34802 -14.32509 -13.84975 -13.34280 -13.01947 -12.93576 -12.53161 -12.40629 -12.24631 -12.10150 -11.93563 -11.76149 -11.46781 -11.09374 -10.87728 -10.69429 -10.45686 -10.12525 -8.88334 -6.59122 1.54108 1.58218 1.66432 1.82986 2.08300 2.27843 2.50254 2.86380 2.94213 3.40706 3.54416 3.59317 3.77845 3.83377 4.02227 4.11982 4.21694 4.35235 4.50557 4.62149 4.66602 4.72293 4.84156 4.89504 5.03669 5.15107 5.20103 5.31511 5.32787 5.38492 5.42769 5.54486 6.03145 6.27876 6.67703 7.12852 7.33491 8.44862 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.004851 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.985390 B = 5770.416566 C = 5937.680012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 H 0.052 0.948 4 C -0.122 4.122 5 C 0.496 3.504 6 O -0.575 6.575 7 N -0.704 5.704 8 C 0.241 3.759 9 H 0.042 0.958 10 C -0.653 4.653 11 H 0.085 0.915 12 C 0.008 3.992 13 N -0.873 5.873 14 Si 1.103 2.897 15 H -0.285 1.285 16 H -0.271 1.271 17 H -0.257 1.257 18 C 0.414 3.586 19 F -0.190 7.190 20 F -0.207 7.207 21 F -0.189 7.189 22 C -0.148 4.148 23 C -0.182 4.182 24 C -0.177 4.177 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.415 0.585 31 H 0.261 0.739 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -7.046 13.696 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.060 4.060 3 H 0.071 0.929 4 C -0.161 4.161 5 C 0.285 3.715 6 O -0.454 6.454 7 N -0.355 5.355 8 C 0.133 3.867 9 H 0.060 0.940 10 C -0.688 4.688 11 H 0.103 0.897 12 C -0.200 4.200 13 N -0.503 5.503 14 Si 0.923 3.077 15 H -0.211 1.211 16 H -0.197 1.197 17 H -0.181 1.181 18 C 0.358 3.642 19 F -0.171 7.171 20 F -0.188 7.188 21 F -0.171 7.171 22 C -0.166 4.166 23 C -0.219 4.219 24 C -0.214 4.214 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.252 0.748 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.222 -6.171 12.166 14.607 hybrid contribution 0.299 0.457 1.344 1.451 sum 5.521 -5.713 13.510 15.673 Atomic orbital electron populations 1.21853 0.94916 1.01955 1.01641 1.20379 0.96068 0.97912 0.91664 0.92899 1.21764 1.04148 1.00439 0.89758 1.21747 0.78381 0.85678 0.85679 1.90650 1.41278 1.26417 1.87053 1.45912 1.57521 1.27513 1.04585 1.19249 0.90310 0.89970 0.87214 0.94009 1.21845 1.52875 0.99012 0.95060 0.89704 1.27281 0.91504 0.95436 1.05769 1.70878 1.22278 1.25345 1.31762 0.83167 0.76792 0.76261 0.71508 1.21068 1.19672 1.18126 1.23068 0.83958 0.84099 0.73033 1.93123 1.92469 1.82056 1.49498 1.93092 1.96826 1.71319 1.57602 1.93020 1.44002 1.84311 1.95728 1.22297 0.95469 1.02223 0.96594 1.23077 1.04650 0.97327 0.96877 1.23044 0.93229 1.02173 1.02927 0.94001 0.91726 0.92212 0.86376 0.86988 0.74815 0.92907 0.86316 0.89836 0.87431 0.87097 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.92 71.98 0.64 -3.22 16 2 C -0.04 -1.02 2.19 -10.79 -0.02 -1.04 16 3 H 0.05 1.57 7.71 -2.39 -0.02 1.55 16 4 C -0.12 -3.02 5.09 29.85 0.15 -2.87 16 5 C 0.50 18.40 7.15 87.66 0.63 19.03 16 6 O -0.57 -26.16 12.53 -3.02 -0.04 -26.20 16 7 N -0.70 -27.57 4.94 -446.09 -2.20 -29.77 16 8 C 0.24 11.83 2.00 44.25 0.09 11.92 16 9 H 0.04 2.37 6.46 -2.39 -0.02 2.36 16 10 C -0.65 -32.98 8.32 25.60 0.21 -32.77 16 11 H 0.08 4.02 7.86 -2.91 -0.02 3.99 16 12 C 0.01 0.43 4.23 84.65 0.36 0.79 16 13 N -0.87 -50.02 12.35 21.45 0.26 -49.76 16 14 Si 1.10 46.01 29.99 68.60 2.06 48.06 16 15 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 18 C 0.41 20.73 2.82 71.98 0.20 20.94 16 19 F -0.19 -10.32 14.71 44.97 0.66 -9.66 16 20 F -0.21 -10.32 15.77 44.97 0.71 -9.61 16 21 F -0.19 -8.79 16.97 44.97 0.76 -8.03 16 22 C -0.15 -2.67 5.15 -10.79 -0.06 -2.72 16 23 C -0.18 -3.08 10.18 30.61 0.31 -2.77 16 24 C -0.18 -2.81 9.67 30.61 0.30 -2.51 16 25 H 0.04 1.42 5.95 -2.38 -0.01 1.41 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.11 2.33 7.12 -2.39 -0.02 2.31 16 30 H 0.42 13.55 8.53 -92.71 -0.79 12.76 16 31 H 0.26 15.52 7.25 -92.71 -0.67 14.84 16 32 H 0.12 1.83 8.11 -2.38 -0.02 1.81 16 33 H 0.08 1.58 8.05 -2.38 -0.02 1.56 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.53 7.58 -2.39 -0.02 1.51 16 Total: -1.00 -64.04 309.64 5.44 -58.59 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.42 Total: 21.60 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 2.81 Total: 4.77 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.94 Total: -79.53 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.04 Total: -26.20 kcal Atomic # 9 Polarization: -29.44 SS G_CDS: 2.13 Total: -27.30 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.06 Total: 48.06 kcal Total: -64.04 5.44 -58.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928814380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.707 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds