Wall clock time and date at job start Tue Mar 31 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99942 * 2 1 4 4 O 1.21516 * 119.99775 * 175.79621 * 3 2 1 5 5 C 1.48153 * 119.99976 * 355.78664 * 3 2 1 6 6 C 1.39907 * 120.90632 * 219.44906 * 5 3 2 7 7 C 1.38034 * 119.06078 * 179.73193 * 6 5 3 8 8 N 1.31881 * 120.93954 * 0.55983 * 7 6 5 9 9 C 1.31957 * 122.01123 * 359.71055 * 8 7 6 10 10 F 1.35105 * 119.58859 * 180.02562 * 9 8 7 11 11 C 1.38530 * 120.82598 * 0.02562 * 9 8 7 12 12 C 1.46506 * 120.00113 * 179.97438 * 2 1 3 13 13 C 1.53490 * 114.20617 * 300.00667 * 12 2 1 14 14 N 1.47069 * 87.98861 * 87.71272 * 13 12 2 15 15 C 1.36931 * 136.05861 * 207.08220 * 14 13 12 16 16 H 1.08004 * 119.99877 * 7.30581 * 15 14 13 17 17 C 1.38815 * 120.00241 * 187.30436 * 15 14 13 18 18 N 1.31618 * 120.00134 * 194.81923 * 17 15 14 19 19 Si 1.86797 * 119.99543 * 14.82357 * 17 15 14 20 20 H 1.48500 * 109.46986 * 269.99498 * 19 17 15 21 21 H 1.48497 * 109.47435 * 29.99664 * 19 17 15 22 22 H 1.48500 * 109.46991 * 149.99901 * 19 17 15 23 23 C 1.47068 * 87.88311 * 27.34203 * 14 13 12 24 24 H 1.09003 * 109.47539 * 274.70730 * 1 2 3 25 25 H 1.09000 * 109.47255 * 34.70625 * 1 2 3 26 26 H 1.09001 * 109.47063 * 154.70327 * 1 2 3 27 27 H 1.07996 * 120.46750 * 359.97438 * 6 5 3 28 28 H 1.08005 * 119.52826 * 180.29123 * 7 6 5 29 29 H 1.08001 * 120.50775 * 179.97438 * 11 9 8 30 30 H 1.09001 * 113.28386 * 166.93038 * 12 2 1 31 31 H 1.09000 * 113.46908 * 332.93317 * 13 12 2 32 32 H 1.08999 * 113.46800 * 202.49447 * 13 12 2 33 33 H 0.97000 * 119.99871 * 354.94257 * 18 17 15 34 34 H 1.08996 * 113.46894 * 87.43683 * 23 14 13 35 35 H 1.09000 * 113.46437 * 217.87906 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1686 0.0771 5 6 1.4010 2.4485 -0.0943 6 6 1.8934 3.5061 -0.8666 7 6 1.1721 4.6812 -0.9320 8 7 0.0394 4.8191 -0.2707 9 6 -0.4586 3.8499 0.4736 10 9 -1.6234 4.0442 1.1300 11 6 0.1981 2.6358 0.5905 12 6 2.1975 -1.2688 0.0006 13 6 1.9059 -2.1633 1.2133 14 7 0.7771 -2.7291 0.4591 15 6 -0.4242 -3.3086 0.7691 16 1 -0.7685 -3.3233 1.7927 17 6 -1.1995 -3.8772 -0.2322 18 7 -2.4619 -4.1690 -0.0013 19 14 -0.4508 -4.2282 -1.9072 20 1 -0.6272 -3.0443 -2.7861 21 1 0.9973 -4.5177 -1.7514 22 1 -1.1275 -5.4017 -2.5157 23 6 1.5094 -2.4047 -0.7743 24 1 -0.3634 0.0843 1.0242 25 1 -0.3634 0.8448 -0.5851 26 1 -0.3633 -0.9291 -0.4391 27 1 2.8226 3.4031 -1.4072 28 1 1.5427 5.5008 -1.5297 29 1 -0.2138 1.8462 1.2015 30 1 3.2576 -1.1543 -0.2259 31 1 1.6004 -1.6071 2.0995 32 1 2.6956 -2.8857 1.4197 33 1 -2.8311 -4.0555 0.8885 34 1 2.1946 -3.1906 -1.0918 35 1 0.8662 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042525601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:57 Heat of formation + Delta-G solvation = 48.425431 kcal Electronic energy + Delta-G solvation = -21787.447423 eV Core-core repulsion = 18317.616839 eV Total energy + Delta-G solvation = -3469.830584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.19017 -40.93399 -39.63174 -38.06397 -34.74169 -32.98264 -32.25494 -31.17365 -28.38463 -26.74577 -25.43187 -25.16243 -23.90457 -22.55069 -20.78382 -19.08246 -18.10637 -17.55662 -17.48450 -16.65406 -16.41023 -16.22279 -15.98904 -15.34116 -14.86814 -14.36006 -14.23683 -13.86637 -13.65726 -13.45040 -13.29533 -13.09963 -12.85287 -12.37442 -12.13560 -11.49836 -11.46427 -10.98630 -10.71107 -10.48677 -10.31688 -10.21447 -9.75331 -9.72984 -9.35241 -9.29292 -8.81974 -8.40567 -7.31383 -6.41031 -3.35170 0.43193 0.60437 2.56068 2.88462 3.25071 3.30382 3.38015 3.39074 3.52688 4.06715 4.37925 4.47278 4.56407 4.59387 4.62466 4.98969 5.13669 5.22510 5.28335 5.40320 5.44333 5.62555 5.71267 5.77998 5.83644 6.10272 6.11266 6.21347 6.23707 6.28325 6.52296 6.79561 6.97150 7.28592 7.46663 8.04532 8.13094 8.85791 9.37686 10.23887 11.08141 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.005375 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.704338 B = 5208.122963 C = 5856.944416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.567 5.567 3 C 0.556 3.444 4 O -0.533 6.533 5 C -0.047 4.047 6 C -0.134 4.134 7 C 0.133 3.867 8 N -0.505 5.505 9 C 0.306 3.694 10 F -0.108 7.108 11 C -0.166 4.166 12 C 0.096 3.904 13 C 0.107 3.893 14 N -0.622 5.622 15 C -0.306 4.306 16 H 0.083 0.917 17 C -0.021 4.021 18 N -0.928 5.928 19 Si 1.057 2.943 20 H -0.294 1.294 21 H -0.281 1.281 22 H -0.294 1.294 23 C 0.091 3.909 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.153 0.847 28 H 0.174 0.826 29 H 0.163 0.837 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.110 14.479 -2.179 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.297 5.297 3 C 0.343 3.657 4 O -0.411 6.411 5 C -0.058 4.058 6 C -0.155 4.155 7 C -0.023 4.023 8 N -0.220 5.220 9 C 0.152 3.848 10 F -0.087 7.087 11 C -0.188 4.188 12 C -0.008 4.008 13 C -0.021 4.021 14 N -0.350 5.350 15 C -0.432 4.432 16 H 0.100 0.900 17 C -0.221 4.221 18 N -0.570 5.570 19 Si 0.889 3.111 20 H -0.221 1.221 21 H -0.207 1.207 22 H -0.221 1.221 23 C -0.035 4.035 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.171 0.829 28 H 0.191 0.809 29 H 0.180 0.820 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.622 14.537 -3.594 16.803 hybrid contribution 0.397 -0.421 1.849 1.938 sum 8.019 14.116 -1.745 16.328 Atomic orbital electron populations 1.22266 0.77995 1.04844 1.01990 1.47314 1.07804 1.04559 1.70002 1.18085 0.86920 0.83090 0.77614 1.90778 1.13035 1.86973 1.50289 1.20248 0.93724 0.95315 0.96527 1.22277 1.01535 0.92670 0.99020 1.22514 0.88228 0.96793 0.94805 1.66873 1.14601 1.32240 1.08245 1.17975 0.83845 0.90232 0.92698 1.91659 1.44163 1.95462 1.77410 1.22439 0.95570 0.98172 1.02580 1.22614 0.95712 0.82571 0.99948 1.22800 0.90793 0.93506 0.94967 1.46455 1.15004 1.72467 1.01124 1.20126 0.91249 1.35202 0.96611 0.89966 1.25723 0.95150 0.97650 1.03576 1.70902 1.10949 1.51797 1.23346 0.83853 0.75043 0.76702 0.75537 1.22136 1.20749 1.22149 1.23125 0.94341 0.93547 0.92478 0.92094 0.92237 0.87242 0.82905 0.80852 0.81971 0.87338 0.93321 0.93373 0.92712 0.92159 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 8.10 59.84 0.48 1.62 16 2 N -0.57 -9.10 3.12 -174.55 -0.54 -9.64 16 3 C 0.56 8.48 7.40 -12.19 -0.09 8.39 16 4 O -0.53 -9.29 16.48 5.35 0.09 -9.20 16 5 C -0.05 -0.60 5.22 -104.66 -0.55 -1.14 16 6 C -0.13 -1.38 9.76 -39.03 -0.38 -1.76 16 7 C 0.13 1.25 11.17 -17.61 -0.20 1.05 16 8 N -0.50 -6.15 10.35 -13.64 -0.14 -6.30 16 9 C 0.31 3.88 8.41 -17.39 -0.15 3.73 16 10 F -0.11 -1.42 17.29 2.25 0.04 -1.38 16 11 C -0.17 -2.04 7.68 -38.94 -0.30 -2.34 16 12 C 0.10 1.63 4.66 -67.67 -0.32 1.31 16 13 C 0.11 1.98 8.31 -8.51 -0.07 1.90 16 14 N -0.62 -13.78 2.33 -184.62 -0.43 -14.21 16 15 C -0.31 -8.04 10.50 -15.06 -0.16 -8.19 16 16 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 17 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 18 N -0.93 -27.65 13.70 55.49 0.76 -26.89 16 19 Si 1.06 24.94 25.49 -169.99 -4.33 20.61 16 20 H -0.29 -6.60 6.97 56.52 0.39 -6.21 16 21 H -0.28 -6.14 5.62 56.52 0.32 -5.82 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.09 1.76 4.63 -8.37 -0.04 1.72 16 24 H 0.06 0.95 6.90 -51.93 -0.36 0.59 16 25 H 0.06 0.82 5.92 -51.93 -0.31 0.51 16 26 H 0.11 2.14 5.13 -51.93 -0.27 1.87 16 27 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.16 1.92 5.49 -52.49 -0.29 1.63 16 30 H 0.11 1.71 7.32 -51.93 -0.38 1.33 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.26 7.75 8.73 -40.82 -0.36 7.40 16 34 H 0.06 1.13 7.03 -51.93 -0.37 0.76 16 35 H 0.06 1.12 5.38 -51.93 -0.28 0.84 16 LS Contribution 292.13 15.07 4.40 4.40 Total: -1.00 -31.01 292.13 -5.61 -36.62 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.60 Total: 0.37 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.85 Total: 5.62 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.35 Total: -57.03 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.33 Total: 20.61 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.01 -5.61 -36.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042525601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.045 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds