Wall clock time and date at job start Tue Mar 31 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99942 * 2 1 4 4 O 1.21516 * 119.99775 * 175.79621 * 3 2 1 5 5 C 1.48153 * 119.99976 * 355.78664 * 3 2 1 6 6 C 1.39907 * 120.90632 * 219.44906 * 5 3 2 7 7 C 1.38034 * 119.06078 * 179.73193 * 6 5 3 8 8 N 1.31881 * 120.93954 * 0.55983 * 7 6 5 9 9 C 1.31957 * 122.01123 * 359.71055 * 8 7 6 10 10 F 1.35105 * 119.58859 * 180.02562 * 9 8 7 11 11 C 1.38530 * 120.82598 * 0.02562 * 9 8 7 12 12 C 1.46506 * 120.00113 * 179.97438 * 2 1 3 13 13 C 1.53490 * 114.20617 * 300.00667 * 12 2 1 14 14 N 1.47069 * 87.98861 * 87.71272 * 13 12 2 15 15 C 1.36931 * 136.05861 * 207.08220 * 14 13 12 16 16 H 1.08004 * 119.99877 * 7.30581 * 15 14 13 17 17 C 1.38815 * 120.00241 * 187.30436 * 15 14 13 18 18 N 1.31618 * 120.00134 * 194.81923 * 17 15 14 19 19 Si 1.86797 * 119.99543 * 14.82357 * 17 15 14 20 20 H 1.48500 * 109.46986 * 269.99498 * 19 17 15 21 21 H 1.48497 * 109.47435 * 29.99664 * 19 17 15 22 22 H 1.48500 * 109.46991 * 149.99901 * 19 17 15 23 23 C 1.47068 * 87.88311 * 27.34203 * 14 13 12 24 24 H 1.09003 * 109.47539 * 274.70730 * 1 2 3 25 25 H 1.09000 * 109.47255 * 34.70625 * 1 2 3 26 26 H 1.09001 * 109.47063 * 154.70327 * 1 2 3 27 27 H 1.07996 * 120.46750 * 359.97438 * 6 5 3 28 28 H 1.08005 * 119.52826 * 180.29123 * 7 6 5 29 29 H 1.08001 * 120.50775 * 179.97438 * 11 9 8 30 30 H 1.09001 * 113.28386 * 166.93038 * 12 2 1 31 31 H 1.09000 * 113.46908 * 332.93317 * 13 12 2 32 32 H 1.08999 * 113.46800 * 202.49447 * 13 12 2 33 33 H 0.97000 * 119.99871 * 354.94257 * 18 17 15 34 34 H 1.08996 * 113.46894 * 87.43683 * 23 14 13 35 35 H 1.09000 * 113.46437 * 217.87906 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1686 0.0771 5 6 1.4010 2.4485 -0.0943 6 6 1.8934 3.5061 -0.8666 7 6 1.1721 4.6812 -0.9320 8 7 0.0394 4.8191 -0.2707 9 6 -0.4586 3.8499 0.4736 10 9 -1.6234 4.0442 1.1300 11 6 0.1981 2.6358 0.5905 12 6 2.1975 -1.2688 0.0006 13 6 1.9059 -2.1633 1.2133 14 7 0.7771 -2.7291 0.4591 15 6 -0.4242 -3.3086 0.7691 16 1 -0.7685 -3.3233 1.7927 17 6 -1.1995 -3.8772 -0.2322 18 7 -2.4619 -4.1690 -0.0013 19 14 -0.4508 -4.2282 -1.9072 20 1 -0.6272 -3.0443 -2.7861 21 1 0.9973 -4.5177 -1.7514 22 1 -1.1275 -5.4017 -2.5157 23 6 1.5094 -2.4047 -0.7743 24 1 -0.3634 0.0843 1.0242 25 1 -0.3634 0.8448 -0.5851 26 1 -0.3633 -0.9291 -0.4391 27 1 2.8226 3.4031 -1.4072 28 1 1.5427 5.5008 -1.5297 29 1 -0.2138 1.8462 1.2015 30 1 3.2576 -1.1543 -0.2259 31 1 1.6004 -1.6071 2.0995 32 1 2.6956 -2.8857 1.4197 33 1 -2.8311 -4.0555 0.8885 34 1 2.1946 -3.1906 -1.0918 35 1 0.8662 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042525601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:57 Heat of formation + Delta-G solvation = 27.322152 kcal Electronic energy + Delta-G solvation = -21788.362530 eV Core-core repulsion = 18317.616839 eV Total energy + Delta-G solvation = -3470.745691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.16147 -42.05982 -40.81882 -39.42211 -36.07319 -34.59456 -33.67600 -32.05646 -30.11493 -28.06840 -26.96185 -26.38363 -24.80722 -24.09935 -22.16121 -20.51763 -19.56360 -19.03009 -18.53512 -17.82801 -17.43563 -17.23896 -17.20535 -16.64882 -16.33385 -15.77697 -15.61149 -15.21107 -15.15615 -14.70569 -14.46272 -14.29627 -14.09762 -13.53813 -13.36599 -13.26392 -12.81928 -12.68346 -12.35670 -12.02737 -11.60283 -11.47621 -11.29229 -11.17068 -10.85774 -10.71245 -10.16939 -9.75557 -9.22555 -8.56835 -5.42839 -0.51476 -0.25345 1.40797 1.42236 1.52347 1.66584 1.69369 2.36925 2.47371 2.55258 2.95468 3.04939 3.21359 3.52154 3.54532 3.67452 3.72459 4.13108 4.17908 4.28205 4.33483 4.38257 4.50635 4.62827 4.64562 4.66431 4.76769 4.82271 4.84780 5.08562 5.20675 5.38383 5.44193 5.98493 6.20254 6.44627 6.72863 6.81293 7.35488 8.29057 8.94276 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.005375 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.704338 B = 5208.122963 C = 5856.944416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.573 5.573 3 C 0.564 3.436 4 O -0.552 6.552 5 C -0.063 4.063 6 C -0.121 4.121 7 C 0.146 3.854 8 N -0.519 5.519 9 C 0.291 3.709 10 F -0.117 7.117 11 C -0.168 4.168 12 C 0.115 3.885 13 C 0.106 3.894 14 N -0.646 5.646 15 C -0.280 4.280 16 H 0.048 0.952 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 1.093 2.907 20 H -0.277 1.277 21 H -0.251 1.251 22 H -0.309 1.309 23 C 0.088 3.912 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.175 0.825 28 H 0.218 0.782 29 H 0.159 0.841 30 H 0.131 0.869 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.247 0.753 34 H 0.079 0.921 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.690 16.363 -3.744 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.303 5.303 3 C 0.352 3.648 4 O -0.431 6.431 5 C -0.074 4.074 6 C -0.141 4.141 7 C -0.010 4.010 8 N -0.235 5.235 9 C 0.139 3.861 10 F -0.096 7.096 11 C -0.189 4.189 12 C 0.010 3.990 13 C -0.020 4.020 14 N -0.375 5.375 15 C -0.407 4.407 16 H 0.066 0.934 17 C -0.269 4.269 18 N -0.614 5.614 19 Si 0.919 3.081 20 H -0.204 1.204 21 H -0.175 1.175 22 H -0.238 1.238 23 C -0.037 4.037 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.193 0.807 28 H 0.235 0.765 29 H 0.177 0.823 30 H 0.149 0.851 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.249 16.460 -5.134 20.058 hybrid contribution -0.310 -0.877 2.419 2.592 sum 9.939 15.582 -2.715 18.681 Atomic orbital electron populations 1.22094 0.78166 1.03859 1.01867 1.47361 1.07671 1.04808 1.70424 1.18325 0.86666 0.83387 0.76415 1.90767 1.13908 1.87322 1.51124 1.20134 0.94030 0.94933 0.98261 1.22590 1.01963 0.91871 0.97718 1.23241 0.86710 0.97498 0.93582 1.66960 1.15770 1.32204 1.08535 1.18048 0.83948 0.90659 0.93441 1.91632 1.44723 1.95529 1.77748 1.22323 0.95659 0.98122 1.02810 1.22435 0.96568 0.82207 0.97785 1.22985 0.89787 0.93916 0.95331 1.46379 1.15160 1.72107 1.03820 1.19856 0.92981 1.33031 0.94863 0.93376 1.26851 0.94864 0.98223 1.07006 1.71012 1.12677 1.55218 1.22531 0.83438 0.75910 0.76483 0.72271 1.20370 1.17499 1.23764 1.23313 0.94142 0.94793 0.91434 0.92476 0.90027 0.90665 0.80726 0.76534 0.82325 0.85131 0.93916 0.91317 0.94386 0.90394 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.58 8.10 127.77 1.03 3.61 16 2 N -0.57 -17.29 3.12 -824.45 -2.57 -19.86 16 3 C 0.56 15.82 7.40 86.88 0.64 16.46 16 4 O -0.55 -17.65 16.48 -3.77 -0.06 -17.71 16 5 C -0.06 -1.44 5.22 -19.89 -0.10 -1.54 16 6 C -0.12 -2.03 9.76 22.63 0.22 -1.81 16 7 C 0.15 2.16 11.17 84.64 0.95 3.11 16 8 N -0.52 -11.37 10.35 -197.08 -2.04 -13.41 16 9 C 0.29 7.02 8.41 84.74 0.71 7.74 16 10 F -0.12 -3.05 17.29 44.97 0.78 -2.27 16 11 C -0.17 -3.90 7.68 22.69 0.17 -3.73 16 12 C 0.11 3.59 4.66 45.55 0.21 3.80 16 13 C 0.11 3.74 8.31 83.18 0.69 4.43 16 14 N -0.65 -28.05 2.33 -738.01 -1.72 -29.76 16 15 C -0.28 -14.99 10.50 84.04 0.88 -14.11 16 16 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 17 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 18 N -0.97 -59.92 13.70 21.65 0.30 -59.62 16 19 Si 1.09 49.91 25.49 68.60 1.75 51.66 16 20 H -0.28 -11.79 6.97 99.48 0.69 -11.09 16 21 H -0.25 -10.04 5.62 99.48 0.56 -9.48 16 22 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 23 C 0.09 3.18 4.63 83.27 0.39 3.57 16 24 H 0.06 1.80 6.90 -2.39 -0.02 1.78 16 25 H 0.08 2.16 5.92 -2.39 -0.01 2.14 16 26 H 0.07 2.93 5.13 -2.39 -0.01 2.91 16 27 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.22 1.23 8.06 -2.91 -0.02 1.20 16 29 H 0.16 3.71 5.49 -2.91 -0.02 3.69 16 30 H 0.13 3.62 7.32 -2.39 -0.02 3.60 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.25 15.40 8.73 -92.71 -0.81 14.59 16 34 H 0.08 2.59 7.03 -2.39 -0.02 2.58 16 35 H 0.05 1.96 5.38 -2.39 -0.01 1.95 16 Total: -1.00 -68.44 292.13 3.63 -64.81 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.93 Total: 8.48 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 6.26 Total: 17.70 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -6.03 Total: -122.66 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.06 Total: -17.71 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 1.75 Total: 51.66 kcal Total: -68.44 3.63 -64.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042525601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.131 kcal (2) G-P(sol) polarization free energy of solvation -68.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds