Wall clock time and date at job start Tue Mar 31 2020 01:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99663 * 2 1 4 4 O 1.21570 * 119.99717 * 184.86374 * 3 2 1 5 5 C 1.47724 * 120.00424 * 4.86836 * 3 2 1 6 6 C 1.40151 * 120.53155 * 201.59633 * 5 3 2 7 7 C 1.38151 * 118.32158 * 179.97438 * 6 5 3 8 8 C 1.38748 * 119.28714 * 359.97438 * 7 6 5 9 9 F 1.35096 * 119.49729 * 179.97438 * 8 7 6 10 10 N 1.32153 * 121.01607 * 359.97438 * 8 7 6 11 11 C 1.31696 * 121.83747 * 359.77261 * 10 8 7 12 12 C 1.46500 * 120.00127 * 180.02562 * 2 1 3 13 13 C 1.53495 * 114.20636 * 59.99822 * 12 2 1 14 14 N 1.47066 * 87.98513 * 220.14874 * 13 12 2 15 15 C 1.36940 * 136.05786 * 207.08420 * 14 13 12 16 16 H 1.08000 * 120.00108 * 8.48065 * 15 14 13 17 17 C 1.38813 * 120.00116 * 188.47973 * 15 14 13 18 18 N 1.31615 * 119.99599 * 195.50526 * 17 15 14 19 19 Si 1.86799 * 119.99982 * 15.50141 * 17 15 14 20 20 H 1.48499 * 109.47191 * 270.00239 * 19 17 15 21 21 H 1.48506 * 109.47023 * 30.00280 * 19 17 15 22 22 H 1.48506 * 109.46901 * 150.00005 * 19 17 15 23 23 C 1.47060 * 87.88661 * 27.34563 * 14 13 12 24 24 H 1.09007 * 109.47191 * 264.73293 * 1 2 3 25 25 H 1.08998 * 109.47186 * 24.73524 * 1 2 3 26 26 H 1.09000 * 109.47262 * 144.73483 * 1 2 3 27 27 H 1.08000 * 120.83558 * 359.95452 * 6 5 3 28 28 H 1.08004 * 120.35424 * 179.97438 * 7 6 5 29 29 H 1.07997 * 119.69987 * 180.26430 * 11 10 8 30 30 H 1.09001 * 113.28389 * 193.06683 * 12 2 1 31 31 H 1.09004 * 113.46821 * 105.37063 * 13 12 2 32 32 H 1.08997 * 113.46802 * 334.92885 * 13 12 2 33 33 H 0.97000 * 120.00429 * 354.91809 * 18 17 15 34 34 H 1.08992 * 113.47180 * 87.43672 * 23 14 13 35 35 H 1.09005 * 113.47126 * 217.87767 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3512 1.1691 -0.0893 5 6 1.4042 2.4442 0.1086 6 6 1.9878 3.6408 -0.3295 7 6 1.2597 4.8085 -0.2069 8 6 -0.0143 4.7596 0.3404 9 9 -0.7298 5.8990 0.4628 10 7 -0.5387 3.6157 0.7438 11 6 0.1157 2.4773 0.6423 12 6 2.1975 -1.2687 -0.0006 13 6 1.9060 -2.1632 -1.2134 14 7 1.9169 -3.3160 -0.3003 15 6 2.1884 -4.6542 -0.4048 16 1 2.6084 -5.0503 -1.3176 17 6 1.9239 -5.5016 0.6623 18 7 2.4516 -6.7069 0.6919 19 14 0.8191 -4.9310 2.0564 20 1 1.6424 -4.2747 3.1035 21 1 -0.1790 -3.9639 1.5329 22 1 0.1155 -6.1010 2.6408 23 6 1.5015 -2.4006 0.7731 24 1 -0.3634 -0.0943 1.0234 25 1 -0.3633 0.9334 -0.4300 26 1 -0.3634 -0.8391 -0.5933 27 1 2.9817 3.6498 -0.7519 28 1 1.6778 5.7492 -0.5335 29 1 -0.3478 1.5618 0.9792 30 1 3.2576 -1.1543 0.2259 31 1 2.7145 -2.1807 -1.9442 32 1 0.9320 -1.9771 -1.6659 33 1 2.9645 -7.0306 -0.0651 34 1 0.4209 -2.2771 0.8443 35 1 1.9654 -2.6202 1.7348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042535732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:51 Heat of formation + Delta-G solvation = 58.587300 kcal Electronic energy + Delta-G solvation = -21245.095555 eV Core-core repulsion = 17775.705622 eV Total energy + Delta-G solvation = -3469.389933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.45078 -41.16131 -39.57553 -38.04635 -35.19460 -33.13855 -32.49337 -31.37153 -28.13714 -27.40841 -25.40614 -24.87078 -24.25865 -22.58746 -20.42701 -19.31470 -18.43077 -18.22417 -17.50532 -17.23322 -16.55838 -16.34896 -15.60455 -15.26382 -15.10518 -14.63218 -14.10312 -13.91238 -13.64053 -13.53347 -13.36295 -13.35014 -13.07243 -12.16959 -12.07986 -11.87712 -11.74489 -11.29051 -10.70709 -10.50762 -10.41104 -10.28189 -9.87661 -9.76840 -9.41714 -9.31376 -8.79162 -8.51543 -7.28673 -6.38672 -3.32059 0.11495 0.62142 2.50498 2.78949 3.07181 3.29019 3.35287 3.40801 3.56269 3.98255 4.14918 4.32369 4.40519 4.52552 4.72803 4.83702 4.86099 4.94189 5.13152 5.26508 5.31043 5.39508 5.47061 5.50003 5.68249 5.78344 6.04429 6.06277 6.19963 6.27979 6.31131 6.82348 7.00090 7.08654 7.30461 8.00309 8.16951 8.89203 9.41531 10.25591 11.11194 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037810 B = 0.003881 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.366686 B = 7212.829943 C = 7661.528285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.591 5.591 3 C 0.563 3.437 4 O -0.531 6.531 5 C -0.194 4.194 6 C 0.010 3.990 7 C -0.202 4.202 8 C 0.324 3.676 9 F -0.109 7.109 10 N -0.517 5.517 11 C 0.148 3.852 12 C 0.102 3.898 13 C 0.107 3.893 14 N -0.615 5.615 15 C -0.308 4.308 16 H 0.084 0.916 17 C -0.021 4.021 18 N -0.927 5.927 19 Si 1.062 2.938 20 H -0.292 1.292 21 H -0.282 1.282 22 H -0.293 1.293 23 C 0.093 3.907 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.196 0.804 30 H 0.128 0.872 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.051 0.949 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 22.930 -1.522 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.323 5.323 3 C 0.350 3.650 4 O -0.408 6.408 5 C -0.199 4.199 6 C -0.016 4.016 7 C -0.223 4.223 8 C 0.171 3.829 9 F -0.088 7.088 10 N -0.231 5.231 11 C -0.009 4.009 12 C -0.002 4.002 13 C -0.021 4.021 14 N -0.343 5.343 15 C -0.434 4.434 16 H 0.102 0.898 17 C -0.221 4.221 18 N -0.569 5.569 19 Si 0.893 3.107 20 H -0.219 1.219 21 H -0.209 1.209 22 H -0.221 1.221 23 C -0.034 4.034 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.176 0.824 28 H 0.173 0.827 29 H 0.212 0.788 30 H 0.146 0.854 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.495 22.233 0.218 23.163 hybrid contribution 0.998 0.654 -1.878 2.225 sum -5.496 22.887 -1.660 23.597 Atomic orbital electron populations 1.22554 0.80126 1.04073 1.02361 1.47795 1.06834 1.05974 1.71704 1.17919 0.87008 0.82935 0.77139 1.90803 1.13293 1.86948 1.49750 1.21106 0.96979 0.95629 1.06223 1.21634 0.99597 0.89490 0.90905 1.21825 0.94251 1.01242 1.04947 1.18490 0.87680 0.82296 0.94442 1.91647 1.78405 1.45664 1.93081 1.67178 1.38369 0.98028 1.19509 1.24068 0.89881 0.95460 0.91447 1.23686 0.97806 0.79093 0.99598 1.22785 0.98780 0.86654 0.93844 1.45877 1.79607 1.03853 1.04939 1.20105 1.39765 0.79545 1.03963 0.89827 1.25823 1.00810 0.94661 1.00780 1.70894 1.35549 1.18878 1.31536 0.83774 0.76661 0.74757 0.75504 1.21944 1.20874 1.22064 1.23119 0.97729 0.87917 0.94654 0.91116 0.89857 0.89627 0.82421 0.82716 0.78750 0.85450 0.93079 0.94418 0.92673 0.93183 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 7.24 59.85 0.43 0.94 16 2 N -0.59 -8.01 3.12 -174.71 -0.54 -8.55 16 3 C 0.56 7.72 7.54 -12.39 -0.09 7.63 16 4 O -0.53 -9.05 16.15 5.30 0.09 -8.96 16 5 C -0.19 -2.07 5.59 -104.83 -0.59 -2.66 16 6 C 0.01 0.09 9.71 -38.90 -0.38 -0.29 16 7 C -0.20 -1.57 10.07 -39.42 -0.40 -1.97 16 8 C 0.32 3.18 8.41 -17.23 -0.14 3.04 16 9 F -0.11 -1.08 17.29 2.25 0.04 -1.04 16 10 N -0.52 -5.59 10.36 -13.22 -0.14 -5.73 16 11 C 0.15 1.44 8.76 -17.14 -0.15 1.29 16 12 C 0.10 1.75 4.55 -67.67 -0.31 1.44 16 13 C 0.11 2.03 8.26 -8.51 -0.07 1.96 16 14 N -0.61 -14.60 3.61 -184.63 -0.67 -15.27 16 15 C -0.31 -8.67 11.03 -15.06 -0.17 -8.83 16 16 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 17 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 18 N -0.93 -28.78 13.70 55.49 0.76 -28.02 16 19 Si 1.06 25.66 25.52 -169.99 -4.34 21.32 16 20 H -0.29 -6.79 6.96 56.52 0.39 -6.40 16 21 H -0.28 -6.15 5.70 56.52 0.32 -5.83 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C 0.09 1.83 5.06 -8.37 -0.04 1.78 16 24 H 0.07 0.58 7.20 -51.93 -0.37 0.21 16 25 H 0.08 0.66 4.95 -51.93 -0.26 0.40 16 26 H 0.09 0.90 6.42 -51.93 -0.33 0.57 16 27 H 0.16 1.26 7.88 -52.49 -0.41 0.85 16 28 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 29 H 0.20 1.54 4.10 -52.49 -0.22 1.32 16 30 H 0.13 2.38 7.33 -51.93 -0.38 2.00 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.66 6.91 -51.93 -0.36 0.30 16 33 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 34 H 0.05 0.91 5.56 -51.93 -0.29 0.63 16 35 H 0.06 1.21 6.30 -51.93 -0.33 0.88 16 LS Contribution 290.85 15.07 4.38 4.38 Total: -1.00 -33.57 290.85 -5.87 -39.44 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -3.46 Total: -1.20 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.00 Total: 3.63 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.59 Total: -57.57 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -4.34 Total: 21.32 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.57 -5.87 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042535732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.032 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds