Wall clock time and date at job start Tue Mar 31 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99663 * 2 1 4 4 O 1.21570 * 119.99717 * 184.86374 * 3 2 1 5 5 C 1.47724 * 120.00424 * 4.86836 * 3 2 1 6 6 C 1.40151 * 120.53155 * 201.59633 * 5 3 2 7 7 C 1.38151 * 118.32158 * 179.97438 * 6 5 3 8 8 C 1.38748 * 119.28714 * 359.97438 * 7 6 5 9 9 F 1.35096 * 119.49729 * 179.97438 * 8 7 6 10 10 N 1.32153 * 121.01607 * 359.97438 * 8 7 6 11 11 C 1.31696 * 121.83747 * 359.77261 * 10 8 7 12 12 C 1.46500 * 120.00127 * 180.02562 * 2 1 3 13 13 C 1.53495 * 114.20636 * 59.99822 * 12 2 1 14 14 N 1.47066 * 87.98513 * 220.14874 * 13 12 2 15 15 C 1.36940 * 136.05786 * 207.08420 * 14 13 12 16 16 H 1.08000 * 120.00108 * 8.48065 * 15 14 13 17 17 C 1.38813 * 120.00116 * 188.47973 * 15 14 13 18 18 N 1.31615 * 119.99599 * 195.50526 * 17 15 14 19 19 Si 1.86799 * 119.99982 * 15.50141 * 17 15 14 20 20 H 1.48499 * 109.47191 * 270.00239 * 19 17 15 21 21 H 1.48506 * 109.47023 * 30.00280 * 19 17 15 22 22 H 1.48506 * 109.46901 * 150.00005 * 19 17 15 23 23 C 1.47060 * 87.88661 * 27.34563 * 14 13 12 24 24 H 1.09007 * 109.47191 * 264.73293 * 1 2 3 25 25 H 1.08998 * 109.47186 * 24.73524 * 1 2 3 26 26 H 1.09000 * 109.47262 * 144.73483 * 1 2 3 27 27 H 1.08000 * 120.83558 * 359.95452 * 6 5 3 28 28 H 1.08004 * 120.35424 * 179.97438 * 7 6 5 29 29 H 1.07997 * 119.69987 * 180.26430 * 11 10 8 30 30 H 1.09001 * 113.28389 * 193.06683 * 12 2 1 31 31 H 1.09004 * 113.46821 * 105.37063 * 13 12 2 32 32 H 1.08997 * 113.46802 * 334.92885 * 13 12 2 33 33 H 0.97000 * 120.00429 * 354.91809 * 18 17 15 34 34 H 1.08992 * 113.47180 * 87.43672 * 23 14 13 35 35 H 1.09005 * 113.47126 * 217.87767 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3512 1.1691 -0.0893 5 6 1.4042 2.4442 0.1086 6 6 1.9878 3.6408 -0.3295 7 6 1.2597 4.8085 -0.2069 8 6 -0.0143 4.7596 0.3404 9 9 -0.7298 5.8990 0.4628 10 7 -0.5387 3.6157 0.7438 11 6 0.1157 2.4773 0.6423 12 6 2.1975 -1.2687 -0.0006 13 6 1.9060 -2.1632 -1.2134 14 7 1.9169 -3.3160 -0.3003 15 6 2.1884 -4.6542 -0.4048 16 1 2.6084 -5.0503 -1.3176 17 6 1.9239 -5.5016 0.6623 18 7 2.4516 -6.7069 0.6919 19 14 0.8191 -4.9310 2.0564 20 1 1.6424 -4.2747 3.1035 21 1 -0.1790 -3.9639 1.5329 22 1 0.1155 -6.1010 2.6408 23 6 1.5015 -2.4006 0.7731 24 1 -0.3634 -0.0943 1.0234 25 1 -0.3633 0.9334 -0.4300 26 1 -0.3634 -0.8391 -0.5933 27 1 2.9817 3.6498 -0.7519 28 1 1.6778 5.7492 -0.5335 29 1 -0.3478 1.5618 0.9792 30 1 3.2576 -1.1543 0.2259 31 1 2.7145 -2.1807 -1.9442 32 1 0.9320 -1.9771 -1.6659 33 1 2.9645 -7.0306 -0.0651 34 1 0.4209 -2.2771 0.8443 35 1 1.9654 -2.6202 1.7348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042535732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:50 Heat of formation + Delta-G solvation = 33.795511 kcal Electronic energy + Delta-G solvation = -21246.170608 eV Core-core repulsion = 17775.705622 eV Total energy + Delta-G solvation = -3470.464985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.17861 -42.09997 -40.71796 -39.36018 -36.38239 -34.50745 -33.87284 -32.33816 -29.77702 -28.42925 -26.98579 -25.96818 -24.97762 -24.04705 -21.82335 -20.63448 -19.60826 -19.14834 -19.03238 -18.15913 -17.58914 -17.23597 -16.94789 -16.65795 -15.89180 -15.72352 -15.67104 -15.25781 -14.89453 -14.41911 -14.35948 -14.18374 -14.02860 -13.60761 -13.57439 -13.37552 -13.03800 -12.69321 -12.50500 -11.97982 -11.53651 -11.33445 -11.29977 -11.22314 -10.85217 -10.76055 -10.16611 -9.70572 -9.27494 -8.64694 -5.50234 -0.65560 -0.05106 1.41848 1.52882 1.55363 1.68826 1.70950 2.36376 2.49424 2.56506 3.00248 3.15431 3.25409 3.38564 3.51960 3.62987 3.76471 4.05200 4.12499 4.14873 4.25678 4.50150 4.51969 4.56819 4.58702 4.70799 4.73118 4.84171 4.87899 5.01531 5.16667 5.35872 5.49190 5.93273 6.23757 6.37053 6.66939 6.93957 7.30185 8.22514 8.86902 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037810 B = 0.003881 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.366686 B = 7212.829943 C = 7661.528285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.590 5.590 3 C 0.565 3.435 4 O -0.571 6.571 5 C -0.204 4.204 6 C 0.011 3.989 7 C -0.184 4.184 8 C 0.315 3.685 9 F -0.112 7.112 10 N -0.536 5.536 11 C 0.156 3.844 12 C 0.127 3.873 13 C 0.108 3.892 14 N -0.649 5.649 15 C -0.295 4.295 16 H 0.048 0.952 17 C -0.082 4.082 18 N -0.966 5.966 19 Si 1.100 2.900 20 H -0.279 1.279 21 H -0.240 1.240 22 H -0.303 1.303 23 C 0.092 3.908 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.187 0.813 29 H 0.214 0.786 30 H 0.109 0.891 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.247 0.753 34 H 0.081 0.919 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 26.145 -0.949 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.320 5.320 3 C 0.355 3.645 4 O -0.451 6.451 5 C -0.209 4.209 6 C -0.015 4.015 7 C -0.205 4.205 8 C 0.162 3.838 9 F -0.091 7.091 10 N -0.250 5.250 11 C -0.001 4.001 12 C 0.021 3.979 13 C -0.018 4.018 14 N -0.378 5.378 15 C -0.423 4.423 16 H 0.066 0.934 17 C -0.274 4.274 18 N -0.611 5.611 19 Si 0.924 3.076 20 H -0.205 1.205 21 H -0.164 1.164 22 H -0.231 1.231 23 C -0.034 4.034 24 H 0.114 0.886 25 H 0.125 0.875 26 H 0.103 0.897 27 H 0.184 0.816 28 H 0.204 0.796 29 H 0.230 0.770 30 H 0.127 0.873 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.501 25.532 0.758 26.920 hybrid contribution 1.654 -0.206 -2.177 2.742 sum -6.846 25.326 -1.420 26.274 Atomic orbital electron populations 1.22905 0.77476 1.05406 1.04274 1.47702 1.08292 1.04486 1.71533 1.18289 0.86593 0.83699 0.75939 1.90789 1.15185 1.87546 1.51585 1.20877 0.97470 0.94487 1.08074 1.21811 1.00002 0.89321 0.90395 1.22043 0.93063 1.02048 1.03354 1.18758 0.88329 0.82085 0.94585 1.91644 1.78570 1.45749 1.93096 1.67189 1.39008 0.98571 1.20280 1.24256 0.89270 0.95812 0.90756 1.22928 0.97048 0.80432 0.97443 1.22958 0.99759 0.85058 0.94061 1.45825 1.80497 1.03162 1.08296 1.19909 1.37942 0.82055 1.02366 0.93412 1.27237 1.01964 0.94307 1.03918 1.71018 1.37816 1.20762 1.31478 0.83373 0.75931 0.75146 0.73135 1.20542 1.16398 1.23062 1.23323 0.99339 0.87307 0.93408 0.88584 0.87534 0.89692 0.81622 0.79604 0.76995 0.87335 0.94072 0.91593 0.94414 0.90154 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 7.24 127.77 0.92 1.54 16 2 N -0.59 -14.22 3.12 -824.93 -2.57 -16.79 16 3 C 0.57 14.27 7.54 86.75 0.65 14.92 16 4 O -0.57 -18.89 16.15 -3.94 -0.06 -18.95 16 5 C -0.20 -3.76 5.59 -20.00 -0.11 -3.88 16 6 C 0.01 0.16 9.71 22.71 0.22 0.38 16 7 C -0.18 -2.23 10.07 22.37 0.23 -2.01 16 8 C 0.32 5.23 8.41 84.77 0.71 5.94 16 9 F -0.11 -1.92 17.29 44.97 0.78 -1.14 16 10 N -0.54 -9.91 10.36 -195.73 -2.03 -11.93 16 11 C 0.16 2.48 8.76 85.02 0.74 3.22 16 12 C 0.13 4.12 4.55 45.55 0.21 4.33 16 13 C 0.11 3.96 8.26 83.18 0.69 4.64 16 14 N -0.65 -30.28 3.61 -738.04 -2.67 -32.95 16 15 C -0.30 -16.98 11.03 84.03 0.93 -16.06 16 16 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 17 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 18 N -0.97 -62.15 13.70 21.65 0.30 -61.86 16 19 Si 1.10 50.70 25.52 68.60 1.75 52.45 16 20 H -0.28 -12.17 6.96 99.48 0.69 -11.47 16 21 H -0.24 -9.26 5.70 99.48 0.57 -8.69 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 C 0.09 3.37 5.06 83.27 0.42 3.79 16 24 H 0.10 1.06 7.20 -2.38 -0.02 1.04 16 25 H 0.11 1.20 4.95 -2.39 -0.01 1.19 16 26 H 0.08 1.38 6.42 -2.39 -0.02 1.37 16 27 H 0.17 2.24 7.88 -2.91 -0.02 2.21 16 28 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.21 2.41 4.10 -2.91 -0.01 2.40 16 30 H 0.11 4.00 7.33 -2.39 -0.02 3.99 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.07 2.10 6.91 -2.39 -0.02 2.08 16 33 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 34 H 0.08 2.52 5.56 -2.39 -0.01 2.51 16 35 H 0.05 1.95 6.30 -2.38 -0.02 1.93 16 Total: -1.00 -75.59 290.85 2.52 -73.06 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.95 Total: 5.66 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.08 Total: 12.46 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -6.97 Total: -123.53 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.06 Total: -18.95 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.78 Total: -1.14 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 1.75 Total: 52.45 kcal Total: -75.59 2.52 -73.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042535732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.857 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds