Wall clock time and date at job start Tue Mar 31 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 120.00043 * 2 1 4 4 O 1.21547 * 119.99875 * 175.64861 * 3 2 1 5 5 C 1.47849 * 120.00046 * 355.65222 * 3 2 1 6 6 C 1.39552 * 120.54402 * 220.16847 * 5 3 2 7 7 N 1.31657 * 120.61848 * 179.67862 * 6 5 3 8 8 C 1.31936 * 121.90965 * 0.63485 * 7 6 5 9 9 C 1.38538 * 121.04458 * 359.65052 * 8 7 6 10 10 F 1.35105 * 120.37648 * 179.97438 * 9 8 7 11 11 C 1.38618 * 119.25105 * 0.03003 * 9 8 7 12 12 C 1.46500 * 119.99927 * 180.02562 * 2 1 3 13 13 C 1.53501 * 114.20245 * 299.99564 * 12 2 1 14 14 N 1.47069 * 87.98354 * 87.71994 * 13 12 2 15 15 C 1.36941 * 136.05682 * 207.08607 * 14 13 12 16 16 H 1.08001 * 119.99762 * 5.70327 * 15 14 13 17 17 C 1.38806 * 120.00089 * 185.70907 * 15 14 13 18 18 N 1.31619 * 119.99969 * 5.53929 * 17 15 14 19 19 Si 1.86803 * 120.00221 * 185.54815 * 17 15 14 20 20 H 1.48507 * 109.46817 * 265.00138 * 19 17 15 21 21 H 1.48503 * 109.47048 * 24.99742 * 19 17 15 22 22 H 1.48493 * 109.47684 * 145.00115 * 19 17 15 23 23 C 1.47060 * 87.88841 * 27.33948 * 14 13 12 24 24 H 1.08995 * 109.47043 * 274.67410 * 1 2 3 25 25 H 1.09004 * 109.47193 * 34.67403 * 1 2 3 26 26 H 1.08995 * 109.47145 * 154.67185 * 1 2 3 27 27 H 1.07993 * 119.69147 * 359.97438 * 6 5 3 28 28 H 1.08004 * 119.48231 * 179.67826 * 8 7 6 29 29 H 1.07996 * 120.86420 * 180.02562 * 11 9 8 30 30 H 1.08990 * 113.28430 * 166.93279 * 12 2 1 31 31 H 1.09001 * 113.46710 * 332.94183 * 13 12 2 32 32 H 1.08994 * 113.46684 * 202.49830 * 13 12 2 33 33 H 0.97003 * 119.99834 * 180.02562 * 18 17 15 34 34 H 1.09004 * 113.46719 * 87.43816 * 23 14 13 35 35 H 1.09001 * 113.46928 * 217.87958 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1687 0.0799 5 6 1.4029 2.4458 -0.0971 6 6 1.8950 3.4896 -0.8818 7 7 1.2375 4.6265 -0.9743 8 6 0.1057 4.8321 -0.3283 9 6 -0.4467 3.8487 0.4760 10 9 -1.6062 4.0739 1.1319 11 6 0.2042 2.6312 0.6012 12 6 2.1975 -1.2687 -0.0006 13 6 1.9060 -2.1642 1.2116 14 7 0.7773 -2.7295 0.4570 15 6 -0.4242 -3.3092 0.7666 16 1 -0.7565 -3.3476 1.7935 17 6 -1.2147 -3.8475 -0.2393 18 7 -0.7632 -3.8994 -1.4745 19 14 -2.9196 -4.4982 0.1599 20 1 -2.8472 -5.9621 0.3992 21 1 -3.4347 -3.8225 1.3779 22 1 -3.8323 -4.2275 -0.9797 23 6 1.5093 -2.4041 -0.7762 24 1 -0.3633 0.0837 1.0242 25 1 -0.3634 0.8452 -0.5847 26 1 -0.3633 -0.9288 -0.4396 27 1 2.8213 3.3618 -1.4221 28 1 -0.3984 5.7820 -0.4284 29 1 -0.2033 1.8462 1.2208 30 1 3.2575 -1.1542 -0.2269 31 1 1.6006 -1.6087 2.0983 32 1 2.6957 -2.8867 1.4174 33 1 -1.3158 -4.2753 -2.1776 34 1 2.1946 -3.1898 -1.0944 35 1 0.8661 -2.0528 -1.5830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042599146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:54 Heat of formation + Delta-G solvation = 38.376128 kcal Electronic energy + Delta-G solvation = -21705.077298 eV Core-core repulsion = 18234.810944 eV Total energy + Delta-G solvation = -3470.266355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.18931 -40.80364 -39.39390 -37.73501 -34.56509 -32.75151 -31.96382 -31.14178 -28.05628 -26.58725 -25.05693 -24.72912 -23.88110 -22.97548 -20.76677 -18.71763 -17.82770 -17.40588 -17.20730 -16.88108 -16.36609 -15.97337 -15.63487 -14.94405 -14.87168 -14.22084 -13.96016 -13.87563 -13.59110 -13.44633 -12.82850 -12.68456 -12.60189 -12.42770 -11.88269 -11.41846 -11.10460 -10.95934 -10.74246 -10.38931 -10.23915 -10.05433 -9.96882 -9.58509 -9.54449 -9.23301 -8.91509 -8.18281 -7.02921 -5.92096 -3.24141 0.40503 0.75067 2.69656 3.10487 3.30006 3.36148 3.37883 3.43686 3.75657 4.14633 4.33618 4.36366 4.46949 4.54844 4.92145 5.14081 5.31362 5.34617 5.38942 5.46160 5.57672 5.68283 5.95839 5.98617 6.05869 6.27705 6.36131 6.42660 6.56195 6.78701 7.02454 7.11639 7.36848 7.46959 7.70429 7.82231 8.25966 8.89776 9.55666 10.48980 11.25703 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.005277 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.583325 B = 5304.861549 C = 6278.495513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.564 5.564 3 C 0.558 3.442 4 O -0.538 6.538 5 C -0.141 4.141 6 C 0.141 3.859 7 N -0.460 5.460 8 C 0.088 3.912 9 C 0.042 3.958 10 F -0.127 7.127 11 C -0.081 4.081 12 C 0.080 3.920 13 C 0.105 3.895 14 N -0.607 5.607 15 C -0.220 4.220 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.279 1.279 22 H -0.289 1.289 23 C 0.152 3.848 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.118 0.882 27 H 0.173 0.827 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.255 0.745 34 H 0.044 0.956 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 13.946 1.844 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.293 5.293 3 C 0.344 3.656 4 O -0.417 6.417 5 C -0.146 4.146 6 C -0.017 4.017 7 N -0.168 5.168 8 C -0.070 4.070 9 C 0.021 3.979 10 F -0.105 7.105 11 C -0.108 4.108 12 C -0.024 4.024 13 C -0.022 4.022 14 N -0.333 5.333 15 C -0.347 4.347 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.205 1.205 22 H -0.215 1.215 23 C 0.025 3.975 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.137 0.863 27 H 0.190 0.810 28 H 0.188 0.812 29 H 0.179 0.821 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.116 14.416 1.316 14.630 hybrid contribution -1.632 -1.328 0.898 2.288 sum 0.484 13.088 2.213 13.283 Atomic orbital electron populations 1.22244 0.78450 1.05211 1.01246 1.47282 1.07602 1.04649 1.69768 1.17958 0.86918 0.83044 0.77667 1.90775 1.13129 1.87056 1.50722 1.20966 0.95813 0.97135 1.00726 1.23000 0.98360 0.86478 0.93895 1.67819 1.06709 1.22411 1.19818 1.23094 0.92615 0.98903 0.92390 1.18656 0.85427 0.95907 0.97917 1.91553 1.45214 1.94845 1.78909 1.22265 0.93504 0.96737 0.98247 1.22819 0.95730 0.83036 1.00848 1.22839 0.91092 0.93522 0.94780 1.45890 1.14191 1.71182 1.02058 1.18927 0.91030 1.31290 0.93494 0.90083 1.24805 0.99058 1.00573 0.95726 1.69835 1.36666 1.50001 0.99954 0.86151 0.83768 0.78879 0.77281 1.21569 1.20473 1.21549 1.22431 0.92478 0.90543 0.92013 0.92761 0.92792 0.86343 0.80954 0.81243 0.82062 0.87940 0.93936 0.93778 0.93457 0.93827 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 8.11 59.85 0.49 1.65 16 2 N -0.56 -9.63 3.12 -174.67 -0.54 -10.18 16 3 C 0.56 9.09 7.36 -12.33 -0.09 9.00 16 4 O -0.54 -10.04 16.48 5.32 0.09 -9.95 16 5 C -0.14 -1.90 5.19 -104.83 -0.54 -2.45 16 6 C 0.14 1.75 10.81 -17.14 -0.19 1.56 16 7 N -0.46 -5.49 10.34 -12.86 -0.13 -5.62 16 8 C 0.09 0.91 11.16 -17.40 -0.19 0.72 16 9 C 0.04 0.47 7.33 -39.33 -0.29 0.18 16 10 F -0.13 -1.43 17.28 2.25 0.04 -1.39 16 11 C -0.08 -0.98 7.72 -38.80 -0.30 -1.28 16 12 C 0.08 1.48 4.66 -67.67 -0.32 1.17 16 13 C 0.10 2.06 8.31 -8.50 -0.07 1.99 16 14 N -0.61 -14.13 2.46 -184.60 -0.45 -14.59 16 15 C -0.22 -5.64 10.20 -15.06 -0.15 -5.80 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.92 -25.41 11.76 55.49 0.65 -24.76 16 19 Si 0.91 20.81 29.56 -169.99 -5.02 15.78 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.15 3.29 6.27 -8.37 -0.05 3.24 16 24 H 0.05 0.85 6.90 -51.93 -0.36 0.49 16 25 H 0.05 0.77 5.93 -51.93 -0.31 0.46 16 26 H 0.12 2.44 5.13 -51.93 -0.27 2.17 16 27 H 0.17 1.94 8.06 -52.49 -0.42 1.51 16 28 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 29 H 0.16 1.90 5.54 -52.49 -0.29 1.61 16 30 H 0.10 1.82 7.32 -51.93 -0.38 1.44 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.62 6.74 -51.93 -0.35 1.27 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -29.22 299.16 -6.29 -35.51 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.61 Total: 0.91 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -1.80 Total: 9.77 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.48 Total: -55.14 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.22 -6.29 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042599146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.886 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds