Wall clock time and date at job start Tue Mar 31 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 120.00043 * 2 1 4 4 O 1.21547 * 119.99875 * 175.64861 * 3 2 1 5 5 C 1.47849 * 120.00046 * 355.65222 * 3 2 1 6 6 C 1.39552 * 120.54402 * 220.16847 * 5 3 2 7 7 N 1.31657 * 120.61848 * 179.67862 * 6 5 3 8 8 C 1.31936 * 121.90965 * 0.63485 * 7 6 5 9 9 C 1.38538 * 121.04458 * 359.65052 * 8 7 6 10 10 F 1.35105 * 120.37648 * 179.97438 * 9 8 7 11 11 C 1.38618 * 119.25105 * 0.03003 * 9 8 7 12 12 C 1.46500 * 119.99927 * 180.02562 * 2 1 3 13 13 C 1.53501 * 114.20245 * 299.99564 * 12 2 1 14 14 N 1.47069 * 87.98354 * 87.71994 * 13 12 2 15 15 C 1.36941 * 136.05682 * 207.08607 * 14 13 12 16 16 H 1.08001 * 119.99762 * 5.70327 * 15 14 13 17 17 C 1.38806 * 120.00089 * 185.70907 * 15 14 13 18 18 N 1.31619 * 119.99969 * 5.53929 * 17 15 14 19 19 Si 1.86803 * 120.00221 * 185.54815 * 17 15 14 20 20 H 1.48507 * 109.46817 * 265.00138 * 19 17 15 21 21 H 1.48503 * 109.47048 * 24.99742 * 19 17 15 22 22 H 1.48493 * 109.47684 * 145.00115 * 19 17 15 23 23 C 1.47060 * 87.88841 * 27.33948 * 14 13 12 24 24 H 1.08995 * 109.47043 * 274.67410 * 1 2 3 25 25 H 1.09004 * 109.47193 * 34.67403 * 1 2 3 26 26 H 1.08995 * 109.47145 * 154.67185 * 1 2 3 27 27 H 1.07993 * 119.69147 * 359.97438 * 6 5 3 28 28 H 1.08004 * 119.48231 * 179.67826 * 8 7 6 29 29 H 1.07996 * 120.86420 * 180.02562 * 11 9 8 30 30 H 1.08990 * 113.28430 * 166.93279 * 12 2 1 31 31 H 1.09001 * 113.46710 * 332.94183 * 13 12 2 32 32 H 1.08994 * 113.46684 * 202.49830 * 13 12 2 33 33 H 0.97003 * 119.99834 * 180.02562 * 18 17 15 34 34 H 1.09004 * 113.46719 * 87.43816 * 23 14 13 35 35 H 1.09001 * 113.46928 * 217.87958 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1687 0.0799 5 6 1.4029 2.4458 -0.0971 6 6 1.8950 3.4896 -0.8818 7 7 1.2375 4.6265 -0.9743 8 6 0.1057 4.8321 -0.3283 9 6 -0.4467 3.8487 0.4760 10 9 -1.6062 4.0739 1.1319 11 6 0.2042 2.6312 0.6012 12 6 2.1975 -1.2687 -0.0006 13 6 1.9060 -2.1642 1.2116 14 7 0.7773 -2.7295 0.4570 15 6 -0.4242 -3.3092 0.7666 16 1 -0.7565 -3.3476 1.7935 17 6 -1.2147 -3.8475 -0.2393 18 7 -0.7632 -3.8994 -1.4745 19 14 -2.9196 -4.4982 0.1599 20 1 -2.8472 -5.9621 0.3992 21 1 -3.4347 -3.8225 1.3779 22 1 -3.8323 -4.2275 -0.9797 23 6 1.5093 -2.4041 -0.7762 24 1 -0.3633 0.0837 1.0242 25 1 -0.3634 0.8452 -0.5847 26 1 -0.3633 -0.9288 -0.4396 27 1 2.8213 3.3618 -1.4221 28 1 -0.3984 5.7820 -0.4284 29 1 -0.2033 1.8462 1.2208 30 1 3.2575 -1.1542 -0.2269 31 1 1.6006 -1.6087 2.0983 32 1 2.6957 -2.8867 1.4174 33 1 -1.3158 -4.2753 -2.1776 34 1 2.1946 -3.1898 -1.0944 35 1 0.8661 -2.0528 -1.5830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042599146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:53 Heat of formation + Delta-G solvation = 20.755761 kcal Electronic energy + Delta-G solvation = -21705.841375 eV Core-core repulsion = 18234.810944 eV Total energy + Delta-G solvation = -3471.030431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.06799 -41.96711 -40.67155 -39.21087 -35.96052 -34.32525 -33.37192 -32.08878 -29.82993 -27.98687 -26.40639 -26.31823 -24.90412 -24.49200 -22.13946 -20.17815 -19.08547 -18.55559 -18.39332 -18.13123 -17.63087 -17.05694 -16.88272 -16.66485 -16.26974 -15.65239 -15.39555 -15.11999 -14.59884 -14.58814 -14.38093 -14.24005 -13.88209 -13.44504 -13.31203 -13.26673 -12.79480 -12.62447 -12.46333 -12.00819 -11.76101 -11.55492 -11.34701 -11.02777 -10.92328 -10.62457 -10.15842 -9.62499 -8.92901 -7.91368 -5.23264 -0.54684 -0.17811 1.47473 1.48122 1.49602 1.57845 1.81368 2.46354 2.47509 2.80963 3.18929 3.31285 3.36093 3.45464 3.58016 3.60350 3.74564 3.98040 4.24131 4.38829 4.40327 4.51122 4.56107 4.66255 4.77791 4.80178 4.87306 4.99128 5.17952 5.26102 5.37705 5.46119 5.60984 5.87873 6.33723 6.57952 6.90704 6.93100 7.59828 8.59054 9.26702 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.005277 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.583325 B = 5304.861549 C = 6278.495513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.570 5.570 3 C 0.564 3.436 4 O -0.563 6.563 5 C -0.157 4.157 6 C 0.144 3.856 7 N -0.469 5.469 8 C 0.104 3.896 9 C 0.043 3.957 10 F -0.125 7.125 11 C -0.080 4.080 12 C 0.102 3.898 13 C 0.108 3.892 14 N -0.626 5.626 15 C -0.220 4.220 16 H 0.084 0.916 17 C -0.055 4.055 18 N -0.950 5.950 19 Si 0.969 3.031 20 H -0.293 1.293 21 H -0.266 1.266 22 H -0.295 1.295 23 C 0.154 3.846 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.180 0.820 28 H 0.205 0.795 29 H 0.164 0.836 30 H 0.114 0.886 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.249 0.751 34 H 0.034 0.966 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 15.784 2.721 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.299 5.299 3 C 0.352 3.648 4 O -0.443 6.443 5 C -0.162 4.162 6 C -0.014 4.014 7 N -0.177 5.177 8 C -0.054 4.054 9 C 0.022 3.978 10 F -0.104 7.104 11 C -0.106 4.106 12 C -0.003 4.003 13 C -0.018 4.018 14 N -0.352 5.352 15 C -0.348 4.348 16 H 0.102 0.898 17 C -0.249 4.249 18 N -0.598 5.598 19 Si 0.798 3.202 20 H -0.221 1.221 21 H -0.190 1.190 22 H -0.222 1.222 23 C 0.027 3.973 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.197 0.803 28 H 0.222 0.778 29 H 0.181 0.819 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.599 16.276 2.221 16.504 hybrid contribution -1.447 -1.804 0.655 2.403 sum 0.153 14.472 2.877 14.756 Atomic orbital electron populations 1.22096 0.78073 1.03956 1.01804 1.47312 1.07797 1.04527 1.70220 1.18261 0.86648 0.83459 0.76390 1.90757 1.14315 1.87491 1.51751 1.20680 0.96650 0.96069 1.02785 1.23126 0.98564 0.86296 0.93394 1.67926 1.07401 1.21966 1.20383 1.23648 0.91638 0.99741 0.90419 1.18641 0.85417 0.95688 0.98095 1.91564 1.45117 1.94783 1.78921 1.22274 0.93040 0.97413 0.97884 1.22514 0.95986 0.82913 0.98889 1.22936 0.90072 0.93661 0.95151 1.46063 1.14693 1.70961 1.03502 1.19208 0.92013 1.30016 0.93531 0.89803 1.25474 1.02208 1.01592 0.95650 1.69995 1.37660 1.51495 1.00689 0.85198 0.79988 0.77812 0.77161 1.22096 1.19028 1.22203 1.22337 0.91963 0.91621 0.91349 0.91820 0.90634 0.90298 0.80306 0.77836 0.81872 0.86826 0.93181 0.92545 0.94241 0.94825 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.69 8.11 127.77 1.04 3.73 16 2 N -0.57 -19.07 3.12 -824.80 -2.57 -21.64 16 3 C 0.56 17.78 7.36 86.79 0.64 18.42 16 4 O -0.56 -20.45 16.48 -3.86 -0.06 -20.51 16 5 C -0.16 -3.97 5.19 -20.00 -0.10 -4.07 16 6 C 0.14 3.30 10.81 85.04 0.92 4.22 16 7 N -0.47 -9.93 10.34 -194.60 -2.01 -11.94 16 8 C 0.10 1.79 11.16 84.75 0.95 2.74 16 9 C 0.04 0.84 7.33 22.43 0.16 1.00 16 10 F -0.13 -2.47 17.28 44.97 0.78 -1.69 16 11 C -0.08 -1.77 7.72 22.78 0.18 -1.59 16 12 C 0.10 3.73 4.66 45.55 0.21 3.94 16 13 C 0.11 4.15 8.31 83.18 0.69 4.84 16 14 N -0.63 -29.26 2.46 -737.96 -1.82 -31.08 16 15 C -0.22 -11.27 10.20 84.03 0.86 -10.42 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.06 -2.93 5.50 84.86 0.47 -2.47 16 18 N -0.95 -53.84 11.76 21.65 0.25 -53.58 16 19 Si 0.97 43.03 29.56 68.60 2.03 45.05 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 23 C 0.15 6.80 6.27 83.27 0.52 7.33 16 24 H 0.06 1.92 6.90 -2.39 -0.02 1.90 16 25 H 0.08 2.09 5.93 -2.39 -0.01 2.07 16 26 H 0.08 3.29 5.13 -2.39 -0.01 3.27 16 27 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.16 3.52 5.54 -2.91 -0.02 3.51 16 30 H 0.11 3.94 7.32 -2.39 -0.02 3.92 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.25 13.86 8.31 -92.71 -0.77 13.08 16 34 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.04 2.15 6.74 -2.39 -0.02 2.13 16 Total: -1.00 -62.18 299.16 4.25 -57.93 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.13 Total: 9.79 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 6.53 Total: 27.66 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -6.15 Total: -118.24 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.18 4.25 -57.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042599146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.685 kcal (2) G-P(sol) polarization free energy of solvation -62.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds