Wall clock time and date at job start Tue Mar 31 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34778 * 119.99839 * 2 1 4 4 O 1.21534 * 120.00067 * 185.07381 * 3 2 1 5 5 C 1.48000 * 119.99964 * 5.07881 * 3 2 1 6 6 N 1.32803 * 119.75217 * 6.54115 * 5 3 2 7 7 C 1.31432 * 121.66687 * 180.02562 * 6 5 3 8 8 C 1.38685 * 120.98130 * 0.02562 * 7 6 5 9 9 C 1.38447 * 119.39223 * 359.97438 * 8 7 6 10 10 C 1.38965 * 118.47071 * 359.72980 * 9 8 7 11 11 F 1.35101 * 120.50672 * 180.25609 * 10 9 8 12 12 C 1.46501 * 120.00163 * 180.27775 * 2 1 3 13 13 C 1.53951 * 113.73939 * 42.14743 * 12 2 1 14 14 N 1.47811 * 86.03332 * 222.08513 * 13 12 2 15 15 C 1.36943 * 134.45276 * 204.64018 * 14 13 12 16 16 H 1.07997 * 119.99470 * 179.86485 * 15 14 13 17 17 C 1.38811 * 120.00155 * 359.87049 * 15 14 13 18 18 N 1.31615 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46956 * 60.00386 * 19 17 15 21 21 H 1.48508 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47592 * 299.99861 * 19 17 15 23 23 C 1.47578 * 91.05327 * 24.55011 * 14 13 12 24 24 H 1.08997 * 109.47324 * 276.54571 * 1 2 3 25 25 H 1.09003 * 109.47573 * 36.54773 * 1 2 3 26 26 H 1.09008 * 109.47273 * 156.54244 * 1 2 3 27 27 H 1.07996 * 119.51206 * 179.97438 * 7 6 5 28 28 H 1.07996 * 120.30372 * 180.02562 * 8 7 6 29 29 H 1.08005 * 120.76597 * 180.02562 * 9 8 7 30 30 H 1.08998 * 112.94259 * 173.73639 * 12 2 1 31 31 H 1.09000 * 113.77071 * 336.34829 * 13 12 2 32 32 H 1.08997 * 113.77076 * 107.74314 * 13 12 2 33 33 H 0.97000 * 119.99854 * 179.97438 * 18 17 15 34 34 H 1.09002 * 113.76630 * 221.15191 * 23 14 13 35 35 H 1.08997 * 113.77102 * 89.75456 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3506 1.1693 -0.0931 5 6 1.4031 2.4464 0.1135 6 7 0.0956 2.4363 0.3455 7 6 -0.5948 3.5496 0.4526 8 6 0.0203 4.7861 0.3260 9 6 1.3821 4.8459 0.0836 10 6 2.0897 3.6542 -0.0191 11 9 3.4208 3.6647 -0.2498 12 6 2.1975 -1.2687 -0.0062 13 6 1.6025 -2.3233 -0.9569 14 7 1.8515 -3.2940 0.1296 15 6 2.0506 -4.6480 0.1789 16 1 2.2186 -5.1348 1.1282 17 6 2.0367 -5.3947 -0.9912 18 7 1.8326 -4.8013 -2.1481 19 14 2.3090 -7.2415 -0.9238 20 1 1.2542 -7.8671 -0.0864 21 1 2.2465 -7.8015 -2.2978 22 1 3.6421 -7.5242 -0.3337 23 6 1.8016 -2.2185 1.1388 24 1 -0.3634 0.1171 1.0209 25 1 -0.3634 0.8256 -0.6120 26 1 -0.3634 -0.9428 -0.4091 27 1 -1.6570 3.5008 0.6413 28 1 -0.5575 5.6940 0.4164 29 1 1.8839 5.7968 -0.0184 30 1 3.2740 -1.1372 -0.1150 31 1 0.5458 -2.1708 -1.1762 32 1 2.2026 -2.4981 -1.8499 33 1 1.8233 -5.3230 -2.9658 34 1 2.5604 -2.3099 1.9160 35 1 0.8035 -2.0351 1.5365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044086472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:48 Heat of formation + Delta-G solvation = 44.195663 kcal Electronic energy + Delta-G solvation = -21455.762904 eV Core-core repulsion = 17985.748903 eV Total energy + Delta-G solvation = -3470.014001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.04831 -40.71323 -39.21982 -37.49414 -34.54076 -32.83875 -31.89088 -31.19487 -27.69838 -26.61931 -25.15601 -24.79511 -23.85310 -22.85225 -20.54993 -18.63000 -17.88066 -17.63798 -17.06229 -16.81785 -16.21443 -15.93694 -15.42060 -15.06900 -14.67474 -14.26224 -13.83031 -13.79472 -13.55719 -13.47573 -12.86930 -12.69479 -12.33948 -11.95376 -11.78061 -11.41520 -11.24595 -10.86965 -10.68329 -10.34880 -10.18823 -10.12801 -10.02739 -9.53320 -9.36612 -9.27337 -8.77275 -8.07185 -6.89227 -5.76789 -3.09702 0.28014 0.69904 2.70995 3.09894 3.41745 3.45367 3.46755 3.55982 3.77262 3.95544 4.30890 4.39955 4.48633 4.51398 4.94336 5.19953 5.30898 5.41653 5.49692 5.52613 5.56618 5.68290 6.02126 6.06072 6.10465 6.21838 6.35353 6.48903 6.63729 6.79802 7.21553 7.28705 7.40991 7.53659 7.75096 7.96756 8.36007 9.03855 9.70124 10.57225 11.40403 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040876 B = 0.003810 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.831337 B = 7347.677662 C = 7680.912483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.575 5.575 3 C 0.558 3.442 4 O -0.529 6.529 5 C 0.055 3.945 6 N -0.421 5.421 7 C 0.079 3.921 8 C -0.124 4.124 9 C -0.121 4.121 10 C 0.108 3.892 11 F -0.105 7.105 12 C 0.086 3.914 13 C 0.156 3.844 14 N -0.606 5.606 15 C -0.224 4.224 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.921 5.921 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.111 3.889 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.170 0.830 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.255 0.745 34 H 0.047 0.953 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 21.110 4.489 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.305 5.305 3 C 0.343 3.657 4 O -0.405 6.405 5 C -0.085 4.085 6 N -0.132 5.132 7 C -0.080 4.080 8 C -0.145 4.145 9 C -0.148 4.148 10 C 0.085 3.915 11 F -0.083 7.083 12 C -0.017 4.017 13 C 0.030 3.970 14 N -0.332 5.332 15 C -0.351 4.351 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.016 4.016 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.135 0.865 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.396 19.896 4.366 21.350 hybrid contribution 0.465 -0.090 -0.091 0.482 sum -5.931 19.806 4.275 21.113 Atomic orbital electron populations 1.22121 0.78490 1.02858 1.02224 1.47901 1.07871 1.05379 1.69378 1.17769 0.86604 0.82868 0.78448 1.90834 1.12829 1.86506 1.50365 1.21633 0.90800 0.93637 1.02402 1.68299 1.05422 1.30652 1.08842 1.23059 1.01055 0.87340 0.96578 1.22284 0.94149 1.00279 0.97744 1.21709 0.95068 0.97706 1.00277 1.18687 0.79332 0.94123 0.99309 1.91633 1.28891 1.97085 1.90702 1.24166 0.98096 0.79462 0.99959 1.22706 0.97456 0.83151 0.93651 1.45684 1.83042 1.02382 1.02129 1.18952 1.42326 0.80287 0.93573 0.90073 1.24799 1.02007 0.98266 0.95218 1.69805 1.55249 1.34547 0.97128 0.86163 0.78106 0.84628 0.76625 1.21153 1.21527 1.20998 1.22955 0.98090 0.87292 0.93277 0.92474 0.89965 0.90833 0.81271 0.83396 0.82967 0.86472 0.94729 0.90408 0.93497 0.93474 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 8.14 59.84 0.49 1.76 16 2 N -0.57 -10.32 3.10 -176.81 -0.55 -10.87 16 3 C 0.56 10.12 7.65 -12.26 -0.09 10.03 16 4 O -0.53 -11.24 14.81 5.34 0.08 -11.16 16 5 C 0.05 0.78 6.57 -82.95 -0.55 0.24 16 6 N -0.42 -4.93 6.16 -9.76 -0.06 -4.99 16 7 C 0.08 0.61 11.18 -17.56 -0.20 0.41 16 8 C -0.12 -0.76 10.11 -39.34 -0.40 -1.16 16 9 C -0.12 -0.99 10.16 -39.24 -0.40 -1.39 16 10 C 0.11 1.38 7.31 -38.82 -0.28 1.10 16 11 F -0.11 -1.59 15.57 2.25 0.04 -1.55 16 12 C 0.09 1.81 4.42 -70.15 -0.31 1.50 16 13 C 0.16 3.77 7.00 -2.84 -0.02 3.75 16 14 N -0.61 -15.91 3.70 -177.90 -0.66 -16.57 16 15 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.11 2.39 8.53 -2.97 -0.03 2.36 16 24 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 25 H 0.08 1.10 5.85 -51.93 -0.30 0.80 16 26 H 0.07 1.17 5.74 -51.92 -0.30 0.88 16 27 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 29 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 30 H 0.12 2.65 7.18 -51.93 -0.37 2.28 16 31 H 0.04 0.82 5.96 -51.93 -0.31 0.51 16 32 H 0.08 2.10 7.16 -51.93 -0.37 1.73 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.76 7.52 -51.93 -0.39 0.37 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -34.18 298.70 -6.78 -40.96 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.70 Total: -2.52 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -2.04 Total: 11.79 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.63 Total: -59.31 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.18 -6.78 -40.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044086472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.159 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds