Wall clock time and date at job start Tue Mar 31 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34778 * 119.99839 * 2 1 4 4 O 1.21534 * 120.00067 * 185.07381 * 3 2 1 5 5 C 1.48000 * 119.99964 * 5.07881 * 3 2 1 6 6 N 1.32803 * 119.75217 * 6.54115 * 5 3 2 7 7 C 1.31432 * 121.66687 * 180.02562 * 6 5 3 8 8 C 1.38685 * 120.98130 * 0.02562 * 7 6 5 9 9 C 1.38447 * 119.39223 * 359.97438 * 8 7 6 10 10 C 1.38965 * 118.47071 * 359.72980 * 9 8 7 11 11 F 1.35101 * 120.50672 * 180.25609 * 10 9 8 12 12 C 1.46501 * 120.00163 * 180.27775 * 2 1 3 13 13 C 1.53951 * 113.73939 * 42.14743 * 12 2 1 14 14 N 1.47811 * 86.03332 * 222.08513 * 13 12 2 15 15 C 1.36943 * 134.45276 * 204.64018 * 14 13 12 16 16 H 1.07997 * 119.99470 * 179.86485 * 15 14 13 17 17 C 1.38811 * 120.00155 * 359.87049 * 15 14 13 18 18 N 1.31615 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46956 * 60.00386 * 19 17 15 21 21 H 1.48508 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47592 * 299.99861 * 19 17 15 23 23 C 1.47578 * 91.05327 * 24.55011 * 14 13 12 24 24 H 1.08997 * 109.47324 * 276.54571 * 1 2 3 25 25 H 1.09003 * 109.47573 * 36.54773 * 1 2 3 26 26 H 1.09008 * 109.47273 * 156.54244 * 1 2 3 27 27 H 1.07996 * 119.51206 * 179.97438 * 7 6 5 28 28 H 1.07996 * 120.30372 * 180.02562 * 8 7 6 29 29 H 1.08005 * 120.76597 * 180.02562 * 9 8 7 30 30 H 1.08998 * 112.94259 * 173.73639 * 12 2 1 31 31 H 1.09000 * 113.77071 * 336.34829 * 13 12 2 32 32 H 1.08997 * 113.77076 * 107.74314 * 13 12 2 33 33 H 0.97000 * 119.99854 * 179.97438 * 18 17 15 34 34 H 1.09002 * 113.76630 * 221.15191 * 23 14 13 35 35 H 1.08997 * 113.77102 * 89.75456 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3506 1.1693 -0.0931 5 6 1.4031 2.4464 0.1135 6 7 0.0956 2.4363 0.3455 7 6 -0.5948 3.5496 0.4526 8 6 0.0203 4.7861 0.3260 9 6 1.3821 4.8459 0.0836 10 6 2.0897 3.6542 -0.0191 11 9 3.4208 3.6647 -0.2498 12 6 2.1975 -1.2687 -0.0062 13 6 1.6025 -2.3233 -0.9569 14 7 1.8515 -3.2940 0.1296 15 6 2.0506 -4.6480 0.1789 16 1 2.2186 -5.1348 1.1282 17 6 2.0367 -5.3947 -0.9912 18 7 1.8326 -4.8013 -2.1481 19 14 2.3090 -7.2415 -0.9238 20 1 1.2542 -7.8671 -0.0864 21 1 2.2465 -7.8015 -2.2978 22 1 3.6421 -7.5242 -0.3337 23 6 1.8016 -2.2185 1.1388 24 1 -0.3634 0.1171 1.0209 25 1 -0.3634 0.8256 -0.6120 26 1 -0.3634 -0.9428 -0.4091 27 1 -1.6570 3.5008 0.6413 28 1 -0.5575 5.6940 0.4164 29 1 1.8839 5.7968 -0.0184 30 1 3.2740 -1.1372 -0.1150 31 1 0.5458 -2.1708 -1.1762 32 1 2.2026 -2.4981 -1.8499 33 1 1.8233 -5.3230 -2.9658 34 1 2.5604 -2.3099 1.9160 35 1 0.8035 -2.0351 1.5365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044086472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:48 Heat of formation + Delta-G solvation = 20.692977 kcal Electronic energy + Delta-G solvation = -21456.782057 eV Core-core repulsion = 17985.748903 eV Total energy + Delta-G solvation = -3471.033154 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.03887 -41.77396 -40.51054 -39.14213 -36.04811 -34.18034 -33.39445 -32.06775 -29.63438 -27.95195 -26.66900 -26.37652 -24.82560 -24.24526 -21.97006 -20.27125 -19.00559 -18.70462 -18.62247 -18.01527 -17.49072 -17.19163 -16.93942 -16.30592 -16.20758 -15.72937 -15.21138 -14.90228 -14.80148 -14.39837 -14.26376 -13.84390 -13.66583 -13.44706 -13.40424 -13.16630 -12.84910 -12.78423 -12.56104 -12.10879 -11.99557 -11.57492 -11.40402 -10.95388 -10.88185 -10.35279 -10.14439 -9.56272 -8.98572 -7.93652 -5.28920 -0.56148 0.02311 1.45395 1.49861 1.55908 1.59944 1.80113 2.47187 2.64963 2.88453 3.06225 3.24224 3.38486 3.57796 3.64640 3.78810 3.93729 4.17404 4.30685 4.40669 4.45195 4.63032 4.71239 4.81729 4.83972 4.85986 4.96554 5.03175 5.19882 5.24240 5.43305 5.55502 5.65598 5.85823 6.30974 6.60396 6.86396 6.98894 7.55378 8.48540 9.23376 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040876 B = 0.003810 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.831337 B = 7347.677662 C = 7680.912483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.579 5.579 3 C 0.551 3.449 4 O -0.575 6.575 5 C 0.022 3.978 6 N -0.439 5.439 7 C 0.085 3.915 8 C -0.092 4.092 9 C -0.112 4.112 10 C 0.082 3.918 11 F -0.131 7.131 12 C 0.108 3.892 13 C 0.161 3.839 14 N -0.634 5.634 15 C -0.240 4.240 16 H 0.088 0.912 17 C -0.065 4.065 18 N -0.954 5.954 19 Si 0.985 3.015 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.120 3.880 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.212 0.788 28 H 0.201 0.799 29 H 0.183 0.817 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.250 0.750 34 H 0.053 0.947 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.248 23.511 5.830 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.308 5.308 3 C 0.339 3.661 4 O -0.455 6.455 5 C -0.115 4.115 6 N -0.151 5.151 7 C -0.076 4.076 8 C -0.111 4.111 9 C -0.138 4.138 10 C 0.059 3.941 11 F -0.109 7.109 12 C 0.003 3.997 13 C 0.035 3.965 14 N -0.362 5.362 15 C -0.368 4.368 16 H 0.106 0.894 17 C -0.258 4.258 18 N -0.602 5.602 19 Si 0.813 3.187 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.203 1.203 23 C -0.006 4.006 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.228 0.772 28 H 0.218 0.782 29 H 0.201 0.799 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.923 22.322 5.739 24.715 hybrid contribution 1.114 -0.615 -0.462 1.354 sum -7.808 21.707 5.277 23.665 Atomic orbital electron populations 1.22229 0.76355 1.02753 1.03534 1.47866 1.08977 1.04327 1.69673 1.18444 0.86421 0.84175 0.77011 1.90788 1.14970 1.87420 1.52293 1.20952 0.92094 0.91807 1.06631 1.68143 1.04122 1.33082 1.09723 1.23878 1.02562 0.86804 0.94334 1.22895 0.93174 1.01656 0.93367 1.22139 0.95924 0.96984 0.98798 1.19131 0.78639 0.95458 1.00896 1.91563 1.30847 1.97254 1.91236 1.23459 0.96924 0.80803 0.98466 1.22553 0.97195 0.84225 0.92564 1.45983 1.83429 1.02613 1.04134 1.19387 1.41770 0.81651 0.94006 0.89419 1.25700 1.02282 1.02944 0.94841 1.70009 1.56628 1.35985 0.97555 0.85061 0.78337 0.78961 0.76385 1.19892 1.21905 1.20284 1.23024 0.99278 0.85487 0.92802 0.90797 0.88159 0.92265 0.77165 0.78156 0.79926 0.88824 0.94133 0.94249 0.94079 0.92831 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.69 8.14 127.77 1.04 3.73 16 2 N -0.58 -21.32 3.10 -831.57 -2.57 -23.89 16 3 C 0.55 20.82 7.65 86.83 0.66 21.48 16 4 O -0.57 -26.11 14.81 -3.82 -0.06 -26.17 16 5 C 0.02 0.61 6.57 41.91 0.28 0.89 16 6 N -0.44 -9.17 6.16 -184.78 -1.14 -10.31 16 7 C 0.08 0.87 11.18 84.86 0.95 1.82 16 8 C -0.09 -0.58 10.11 22.43 0.23 -0.35 16 9 C -0.11 -1.42 10.16 22.49 0.23 -1.19 16 10 C 0.08 2.02 7.31 22.76 0.17 2.19 16 11 F -0.13 -4.10 15.57 44.97 0.70 -3.40 16 12 C 0.11 4.75 4.42 46.75 0.21 4.96 16 13 C 0.16 8.14 7.00 86.44 0.60 8.74 16 14 N -0.63 -34.22 3.70 -716.74 -2.65 -36.88 16 15 C -0.24 -13.92 10.70 84.03 0.90 -13.02 16 16 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 17 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 18 N -0.95 -58.95 11.39 21.65 0.25 -58.70 16 19 Si 0.99 46.54 29.55 68.60 2.03 48.57 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 C 0.12 5.22 8.53 86.49 0.74 5.96 16 24 H 0.07 1.89 7.96 -2.39 -0.02 1.87 16 25 H 0.10 2.56 5.85 -2.39 -0.01 2.55 16 26 H 0.06 1.88 5.74 -2.38 -0.01 1.86 16 27 H 0.21 0.40 8.06 -2.91 -0.02 0.37 16 28 H 0.20 -0.70 8.06 -2.91 -0.02 -0.72 16 29 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.09 4.55 7.18 -2.39 -0.02 4.53 16 31 H 0.04 2.00 5.96 -2.39 -0.01 1.99 16 32 H 0.04 2.27 7.16 -2.39 -0.02 2.26 16 33 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 2.39 7.52 -2.39 -0.02 2.37 16 Total: -1.00 -80.25 298.70 4.14 -76.11 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.12 Total: 2.76 kcal Atomic # 6 Polarization: 25.46 SS G_CDS: 6.47 Total: 31.92 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -6.12 Total: -129.78 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.06 Total: -26.17 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.70 Total: -3.40 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -80.25 4.14 -76.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044086472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.799 kcal (2) G-P(sol) polarization free energy of solvation -80.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds