Wall clock time and date at job start Tue Mar 31 2020 00:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.53006 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.56020 * 29.30642 * 4 3 2 6 6 C 1.52997 * 117.49537 * 243.62514 * 4 3 2 7 7 C 1.53000 * 117.49776 * 175.00059 * 4 3 2 8 8 H 1.08990 * 117.49990 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.49504 * 214.97638 * 7 4 3 10 10 O 1.21286 * 120.00129 * 359.97438 * 9 7 4 11 11 N 1.34782 * 119.99988 * 179.97438 * 9 7 4 12 12 C 1.46499 * 119.99906 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.47263 * 35.00873 * 12 11 9 14 14 C 1.50703 * 109.46406 * 155.00122 * 12 11 9 15 15 H 1.08000 * 120.00595 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99680 * 180.02562 * 14 12 11 17 17 N 1.31520 * 120.00270 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00214 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47154 * 59.99724 * 18 16 14 20 20 H 1.48495 * 109.47517 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47017 * 299.99915 * 18 16 14 22 22 C 1.52996 * 109.47373 * 275.00149 * 12 11 9 23 23 F 1.39895 * 109.47205 * 60.00481 * 22 12 11 24 24 F 1.39904 * 109.46995 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47021 * 300.00128 * 22 12 11 26 26 H 1.09006 * 109.47462 * 59.99603 * 1 2 3 27 27 H 1.08995 * 109.47588 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.99960 * 1 2 3 29 29 H 1.09004 * 109.46965 * 240.00040 * 2 1 3 30 30 H 1.08996 * 109.47631 * 120.00408 * 2 1 3 31 31 H 1.08997 * 109.47180 * 60.00528 * 3 2 1 32 32 H 1.09003 * 109.47209 * 300.00001 * 3 2 1 33 33 H 1.08999 * 117.49685 * 145.02116 * 6 4 3 34 34 H 1.08999 * 117.52022 * 359.97438 * 6 4 3 35 35 H 0.97001 * 119.99599 * 0.02562 * 11 9 7 36 36 H 0.96998 * 120.00434 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5851 -0.4823 6 6 4.2769 2.0452 1.2150 7 6 4.2764 2.7945 -0.1190 8 1 3.6512 3.6838 -0.1968 9 6 5.5689 2.8388 -0.8926 10 8 6.0115 1.8263 -1.3926 11 7 6.2331 4.0037 -1.0290 12 6 7.4899 4.0466 -1.7805 13 1 7.4397 3.3446 -2.6129 14 6 7.7103 5.4398 -2.3112 15 1 6.9869 6.2157 -2.1085 16 6 8.8356 5.7239 -3.0555 17 7 9.7169 4.7793 -3.3020 18 14 9.1093 7.4509 -3.7127 19 1 9.1785 8.4070 -2.5786 20 1 10.3831 7.4946 -4.4747 21 1 7.9840 7.8243 -4.6069 22 6 8.6489 3.6627 -0.8586 23 9 8.4443 2.3694 -0.3660 24 9 9.8491 3.7043 -1.5763 25 9 8.7133 4.5639 0.2096 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.2121 1.5844 1.5331 34 1 3.6523 2.4422 2.0152 35 1 5.8793 4.8133 -0.6288 36 1 10.5084 4.9791 -3.8259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133827333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:14 Heat of formation + Delta-G solvation = -171.938786 kcal Electronic energy + Delta-G solvation = -22599.201023 eV Core-core repulsion = 18669.125542 eV Total energy + Delta-G solvation = -3930.075480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -48.34726 -46.00306 -45.61045 -39.46821 -37.04034 -34.62782 -33.83922 -32.53824 -28.73436 -27.39833 -24.64274 -23.78118 -22.03475 -21.20058 -20.40696 -19.57436 -17.54636 -16.83663 -16.64942 -16.55965 -15.76512 -15.29288 -14.96122 -14.66113 -14.50268 -13.69751 -13.50112 -13.22616 -12.92320 -12.78300 -12.48556 -12.39905 -12.28068 -12.22531 -12.04343 -11.91140 -11.79504 -11.37987 -11.20129 -11.04706 -10.91195 -10.87613 -10.79950 -10.41908 -10.10576 -9.89976 -9.67181 -9.17081 -8.72417 -8.25060 -6.23975 -4.48237 3.02873 3.19543 3.24371 3.25917 3.71390 4.05914 4.21251 4.55741 4.67119 4.86440 4.90527 4.93002 5.06996 5.10887 5.26506 5.44961 5.47913 5.64012 5.71283 5.77459 5.77925 5.86166 5.87923 5.95104 6.08478 6.16792 6.17426 6.22833 6.43561 6.94402 7.19452 7.47122 7.62634 8.35278 8.49483 8.92078 9.19799 10.67664 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.004408 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.510105 B = 6351.097769 C = 6840.708591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.121 4.121 5 H 0.117 0.883 6 C -0.151 4.151 7 C -0.185 4.185 8 H 0.120 0.880 9 C 0.533 3.467 10 O -0.538 6.538 11 N -0.708 5.708 12 C 0.244 3.756 13 H 0.085 0.915 14 C -0.553 4.553 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.840 5.840 18 Si 0.916 3.084 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.417 3.583 23 F -0.218 7.218 24 F -0.137 7.137 25 F -0.209 7.209 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 -3.252 6.711 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.140 4.140 5 H 0.135 0.865 6 C -0.188 4.188 7 C -0.207 4.207 8 H 0.138 0.862 9 C 0.319 3.681 10 O -0.416 6.416 11 N -0.356 5.356 12 C 0.139 3.861 13 H 0.102 0.898 14 C -0.590 4.590 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.361 3.639 23 F -0.200 7.200 24 F -0.118 7.118 25 F -0.191 7.191 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.900 -4.035 6.243 14.031 hybrid contribution 0.397 1.325 0.068 1.385 sum -11.502 -2.711 6.311 13.397 Atomic orbital electron populations 1.21781 0.96062 1.01462 1.01689 1.21504 0.95423 0.96726 1.02371 1.21230 0.92237 0.97124 1.02025 1.22415 0.94279 0.95976 1.01287 0.86467 1.23067 1.03005 1.02431 0.90323 1.22322 0.98200 0.98314 1.01821 0.86220 1.19642 0.84556 0.83755 0.80152 1.90683 1.68559 1.33848 1.48465 1.46006 1.24462 1.10176 1.55005 1.19718 0.76602 1.01140 0.88670 0.89776 1.20847 1.08981 0.93336 1.35821 0.90498 1.25092 0.95011 0.98742 0.95576 1.70392 1.10354 1.32431 1.34143 0.86264 0.77754 0.82734 0.79048 1.19813 1.20861 1.19770 1.23140 0.88476 0.72282 0.80032 1.93063 1.95380 1.41954 1.89605 1.93404 1.47558 1.95496 1.75348 1.92987 1.97112 1.68945 1.60076 0.92764 0.92883 0.92892 0.91745 0.91868 0.91811 0.91457 0.88333 0.88171 0.76725 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.13 5.89 -26.73 -0.16 -1.28 16 3 C -0.09 -0.89 5.50 -26.73 -0.15 -1.04 16 4 C -0.12 -1.57 5.25 -90.62 -0.48 -2.05 16 5 H 0.12 1.76 7.60 -51.93 -0.39 1.37 16 6 C -0.15 -1.91 9.88 -26.73 -0.26 -2.17 16 7 C -0.19 -2.70 5.91 -91.77 -0.54 -3.24 16 8 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 9 C 0.53 10.65 7.15 -10.98 -0.08 10.57 16 10 O -0.54 -12.81 14.83 5.55 0.08 -12.73 16 11 N -0.71 -14.66 4.98 -54.93 -0.27 -14.93 16 12 C 0.24 6.14 2.21 -69.08 -0.15 5.99 16 13 H 0.08 2.37 7.58 -51.93 -0.39 1.98 16 14 C -0.55 -14.19 8.46 -34.44 -0.29 -14.48 16 15 H 0.08 1.85 7.74 -52.49 -0.41 1.45 16 16 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 17 N -0.84 -23.18 9.50 55.43 0.53 -22.65 16 18 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.42 10.83 2.81 37.16 0.10 10.94 16 23 F -0.22 -5.62 15.68 2.25 0.04 -5.59 16 24 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 25 F -0.21 -5.23 16.94 2.25 0.04 -5.19 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.10 1.00 8.03 -51.93 -0.42 0.59 16 35 H 0.40 7.12 8.54 -40.82 -0.35 6.77 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 314.69 15.07 4.74 4.74 Total: -1.00 -29.86 314.69 -6.46 -36.32 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.89 Total: 4.72 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.73 Total: 4.01 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.25 Total: -37.59 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 0.10 Total: -14.58 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.86 -6.46 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.618 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds